Merge pull request #444 from SimonRit/WrappingGeometryReaders

Wrapping geometry readers

applications/rtkvarianobigeometry/rtkvarianobigeometry.py

@@ -0,0 +1,36 @@
+#!/usr/bin/env python
+import argparse
+import sys
+import itk
+from itk import RTK as rtk
+
+if __name__ == '__main__':
+  # Argument parsing
+  parser = argparse.ArgumentParser(description=
+    "Creates an RTK geometry file from a Varian OBI acquisition.")
+
+  parser.add_argument('--verbose', '-v', help='Verbose execution', type=bool)
+  parser.add_argument('--xml_file', '-x', help='Varian OBI XML information file on projections')
+  parser.add_argument('--output', '-o', help='Output file name')
+  parser.add_argument('--path', '-p', help='Path containing projections', required=True)
+  parser.add_argument('--regexp', '-r', help='Regular expression to select projection files in path')
+
+  args = parser.parse_args()
+
+  if args.xml_file is None or args.output is None:
+    parser.print_help()
+    sys.exit()
+
+  names = itk.RegularExpressionSeriesFileNames.New()
+  names.SetDirectory(args.path);
+  names.SetRegularExpression(args.regexp);
+
+  reader = rtk.VarianObiGeometryReader.New()
+  reader.SetXMLFileName(args.xml_file)
+  reader.SetProjectionsFileNames(names.GetFileNames())
+  reader.UpdateOutputData()
+
+  xmlWriter = rtk.ThreeDCircularProjectionGeometryXMLFileWriter.New()
+  xmlWriter.SetFilename(args.output)
+  xmlWriter.SetObject(reader.GetGeometry())
+  xmlWriter.WriteFile()

wrapping/rtkBioscanGeometryReader.wrap

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+itk_wrap_simple_class("rtk::BioscanGeometryReader" POINTER)

wrapping/rtkDigisensGeometryReader.wrap

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+itk_wrap_simple_class("rtk::DigisensGeometryReader" POINTER)

wrapping/rtkElektaSynergyGeometryReader.wrap

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+itk_wrap_simple_class("rtk::ElektaSynergyGeometryReader" POINTER)

wrapping/rtkOraGeometryReader.wrap

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+itk_wrap_simple_class("rtk::OraGeometryReader" POINTER)

wrapping/rtkVarianObiGeometryReader.wrap

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+itk_wrap_simple_class("rtk::VarianObiGeometryReader" POINTER)

wrapping/rtkVarianProBeamGeometryReader.wrap

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+itk_wrap_simple_class("rtk::VarianProBeamGeometryReader" POINTER)

wrapping/rtkXRadGeometryReader.wrap

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+itk_wrap_simple_class("rtk::XRadGeometryReader" POINTER)