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Replace gridExtra 'image' table with {flextable} table #133

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Replace gridExtra 'image' table with {flextable} table #133

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caaf6de
Replace gridExtra 'image' table with `{gt}` table
Moohan Nov 27, 2024
5ce5a13
Style code
Moohan Nov 27, 2024
895cb0c
Updated to use flextable
Moohan Nov 28, 2024
89a3e2c
Merge branch 'dec_24_release/general_health' into general_health/top5…
Moohan Dec 11, 2024
ecb27be
Style code
Moohan Dec 11, 2024
3678edd
Merge branch 'development' into general_health/top5_table
Moohan Dec 23, 2024
78d6ca7
Merge branch 'development' into general_health/top5_table
Moohan Dec 23, 2024
4bba6b9
Style code
Moohan Dec 23, 2024
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70 changes: 27 additions & 43 deletions General Health/3. General Health Outputs.R
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Original file line number Diff line number Diff line change
Expand Up @@ -13,6 +13,8 @@
library(cowplot)
library(gridExtra)
library(png)
library(flextable)
library(officer)

# Determine locality (for testing only)
# LOCALITY <- "Inverness"
Expand Down Expand Up @@ -240,7 +242,7 @@ avg_life_exp_latest_male <- ifelse(
locality_missing,
NA_real_,
filter(
life_exp,
life_exp,
sex == "Male",
year == latest_year_life_exp_loc,
area_name == LOCALITY,
Expand All @@ -254,7 +256,7 @@ avg_life_exp_latest_fem <- ifelse(
locality_missing,
NA_real_,
filter(
life_exp,
life_exp,
sex == "Female",
year == latest_year_life_exp_loc,
area_name == LOCALITY,
Expand Down Expand Up @@ -894,49 +896,31 @@ loc.ltc.table <- str_wrap(glue("{LOCALITY} Locality"), width = if_else(n_loc < 5

hscp.ltc.table <- str_wrap(glue("{HSCP} HSCP"), width = 25)


ltc_loc_col <- tableGrob(top5ltc_loc[, 1],
cols = loc.ltc.table,
rows = 1:5,
theme = ttheme_default(
core = list(bg_params = list(fill = top5ltc_loc$colours), fg_params = list(col = "white", fontface = 2, fontsize = 11)),
colhead = list(bg_params = list(fill = "white"), fg_params = list(fontface = 3, fontsize = 11))
)
)
ltc_hscp_col <- tableGrob(top5ltc_hscp[, 1],
cols = hscp.ltc.table,
rows = NULL,
theme = ttheme_default(
core = list(bg_params = list(fill = top5ltc_hscp$colours), fg_params = list(col = "white", fontface = 2, fontsize = 11)),
colhead = list(bg_params = list(fill = "white"), fg_params = list(fontface = 3, fontsize = 11))
)
)
ltc_scot_col <- tableGrob(top5ltc_scot[, 1],
cols = "Scotland",
rows = NULL,
theme = ttheme_default(
core = list(bg_params = list(fill = top5ltc_scot$colours), fg_params = list(col = "white", fontface = 2, fontsize = 11)),
colhead = list(bg_params = list(fill = "white"), fg_params = list(fontface = 3, fontsize = 11))
)
)

## Combine columns
top5ltc_all_table <- as_gtable(gtable_combine(ltc_loc_col, ltc_hscp_col, ltc_scot_col))

title <- ggdraw() +
draw_label(str_wrap(
glue("Top 5 most prevalent Physical Long-Term Conditions {latest_year_ltc}"),
width = 65
), size = 11, fontface = "bold")

top5_ltc_table <- plot_grid(title, top5ltc_all_table, nrow = 2, rel_heights = c(0.1, 1.2))

# Top5 LTC table as a table (instead of image) - almost there...
top5_ltc_table <- bind_cols(
select(top5ltc_loc, {{ loc.ltc.table }} := Prevalence),
select(top5ltc_hscp, {{ hscp.ltc.table }} := Prevalence),
select(top5ltc_scot, "Scotland" = Prevalence)
) |>
flextable(cwidth = 2) %>%
add_header_lines(
values = str_wrap(glue("Top 5 most prevalent Physical Long-Term Conditions {latest_year_ltc}"), width = 65)
) %>%
bg(j = 1, bg = top5ltc_loc$colours) %>%
bg(j = 2, bg = top5ltc_hscp$colours) %>%
bg(j = 3, bg = top5ltc_scot$colours) %>%
fontsize(size = 16, part = "header") %>%
fontsize(size = 12, part = "body") %>%
font(fontname = "Arial", part = "all") %>%
color(color = "white", part = "body") %>%
bold(part = "header") %>%
italic(part = "header") %>%
border(border = fp_border(color = "white", width = 5), part = "body")

rm(
ltc_cols, ltc_loc_col, ltc_hscp_col, ltc_scot_col,
ltc_pops_total_loc, ltc_pops_total_hscp,
loc.ltc.table, hscp.ltc.table,
top5ltc_loc, top5ltc_hscp, top5ltc_scot, top5ltc_all_table, title
ltc_cols, ltc_pops_total_loc, ltc_pops_total_hscp,
loc.ltc.table, loc.ltc.table.wrapped, hscp.ltc.table, hscp.ltc.table.wrapped,
top5ltc_loc, top5ltc_hscp, top5ltc_scot
)

## Objects for text
Expand Down