Refactor template alignments to keep a fixed parcellation#116

Merged

pbarbarant merged 24 commits intomainfrom feat/one-parcellation-template

Dec 18, 2024

+440-359

Commits on Dec 7, 2024

Add index_by_parcel
Pierre-Louis Barbarant
committed
Modify fit method
Pierre-Louis Barbarant
committed
Replace _create_template by _fit_local_template
Pierre-Louis Barbarant
committed
Add template reconstruction + history
Pierre-Louis Barbarant
committed
Rename get_parcellation method to get_parcellation_img for clarity
Pierre-Louis Barbarant
committed
Rename transform parameter from X to img for clarity and update related references
Pierre-Louis Barbarant
committed
Rename test_get_parcellation to test_get_parcellation_img
Pierre-Louis Barbarant
committed
Refactor transform method in TemplateAlignment for clarity and functionality; add get_parcellation method to retrieve parcellation masker details.
Pierre-Louis Barbarant
committed
Remove unused _map_template_to_image function to streamline codebase
Pierre-Louis Barbarant
committed
Remove unused _predict_from_template_and_mapping function
Pierre-Louis Barbarant
committed
Add tests for parcellation retrieval in TemplateAlignment
Pierre-Louis Barbarant
committed

Commits on Dec 8, 2024

Refactor variable names in TemplateAlignment for clarity in parcel data processing
Pierre-Louis Barbarant
committed
Rename index_by_parcel function to _index_by_parcel for clarity and update parameter name for consistency
Pierre-Louis Barbarant
committed
Set default values for parameters in _fit_local_template function for improved usability
Pierre-Louis Barbarant
committed
Add unit tests for template alignment functions and parcellation processing
Pierre-Louis Barbarant
committed
Add function to sample subjects data for testing purposes
Pierre-Louis Barbarant
committed
Update documentation for image processing functions to clarify parameter types and improve readability
Pierre-Louis Barbarant
committed

Commits on Dec 9, 2024

Enhance tutorial on template-based prediction by improving clarity and detail, correcting typos, and updating variable names for consistency
Pierre-Louis Barbarant
committed

Commits on Dec 10, 2024

Merge branch 'main' into feat/one-parcellation-template
pbarbarant
authored
Add test for ParcellationMasker to handle 3D and 4D images with one contrast
Pierre-Louis Barbarant
committed
Rebase with main
Pierre-Louis Barbarant
committed
Fix shape assertion in parcellation retrieval test
Pierre-Louis Barbarant
committed

Commits on Dec 17, 2024