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38 Open 182 Closed
38 Open 182 Closed
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Issues list

pass drug_descriptors (contains mordred descriptors) to consecutive build runs for datasets bug Something isn't working 'build' update enhancement New feature or request
#323 opened Feb 5, 2025 by ymahlich
@jjacobson95
Train_test_validate function does not work for nci60 dataset bug Something isn't working package
#322 opened Feb 4, 2025 by jjacobson95
@jjacobson95
1
discrepancies in mordred values for the same improve_drug_id across different datasets invalid This doesn't seem right
#321 opened Feb 4, 2025 by ymahlich
1
More Flexibility for train_test_validate enhancement New feature or request package
#320 opened Feb 3, 2025 by jjacobson95
1
@ymahlich
2
unexpected data in *_drugs.tsv invalid This doesn't seem right
#319 opened Feb 3, 2025 by ymahlich
2
Transition print() statements in API to logging module enhancement New feature or request
#317 opened Jan 30, 2025 by ymahlich
beataml mutations follow different format than mutations from Broad/Sanger
#315 opened Jan 30, 2025 by ymahlich
Multiple Documentation Updates documentation Improvements or additions to documentation enhancement New feature or request
#313 opened Jan 27, 2025 by jjacobson95
6 tasks
2
Download Function in Package Could be Multi-Threaded enhancement New feature or request package
#312 opened Jan 27, 2025 by jjacobson95
Add NCI60 omics dataset to CoderData new data Request for additional data to be added
#306 opened Jan 21, 2025 by sgosline
@sgosline
Dataset.genes not "dataset specific" invalid This doesn't seem right question Further information is requested
#304 opened Jan 21, 2025 by ymahlich
Evaluate Ginkgo functional data to see if it's usable new data Request for additional data to be added
#300 opened Jan 16, 2025 by sgosline
@sgosline
preparation wrapper script for IMPROVE enhancement New feature or request
#299 opened Jan 16, 2025 by ymahlich
@ymahlich
2
Clean up / Migrate Code in Scripts enhancement New feature or request
#296 opened Jan 15, 2025 by jjacobson95
@jjacobson95
Update cell line data to use orcestra-downloader enhancement New feature or request
#287 opened Jan 3, 2025 by sgosline
1
update tests enhancement New feature or request
#274 opened Dec 18, 2024 by ymahlich
@ymahlich
Add in PDO data from GIST new data Request for additional data to be added
#267 opened Dec 12, 2024 by sgosline
@sgosline
collect CRPM organoid data new data Request for additional data to be added
#266 opened Dec 12, 2024 by sgosline
@sgosline
2
Add in bladder cancer PDO data new data Request for additional data to be added
#265 opened Dec 12, 2024 by sgosline
@sgosline @RubyFore
4
Add in PDO data from CRC organoids new data Request for additional data to be added
#264 opened Dec 12, 2024 by sgosline
@sgosline
1
Update drug descriptor schema to add descriptor type
#262 opened Dec 10, 2024 by sgosline
@sgosline
Add in Sarcoma organoid data from UCLA new data Request for additional data to be added
#259 opened Dec 6, 2024 by sgosline
@sgosline @RubyFore
1
MPNST PDX build does not work without drug file
#258 opened Dec 4, 2024 by sgosline
@sgosline
Migrate from R to Python where possible. 'build' update enhancement New feature or request
#230 opened Oct 16, 2024 by jjacobson95
add ability to generate basic statistics for the individual datasets enhancement New feature or request package
#217 opened Oct 2, 2024 by ymahlich
@ymahlich
1
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