Fix deprecated scipy.ndimage import paths

batchgenerators/augmentations/utils.py

@@ -16,11 +16,10 @@
 import random
 import numpy as np
 from copy import deepcopy
-from scipy.ndimage import map_coordinates, fourier_gaussian
-from scipy.ndimage.filters import gaussian_filter, gaussian_gradient_magnitude
-from scipy.ndimage.morphology import grey_dilation
+from scipy.ndimage import (map_coordinates, fourier_gaussian, gaussian_filter,
+                           gaussian_gradient_magnitude, grey_dilation)
+from scipy.ndimage import label as lb
 from skimage.transform import resize
-from scipy.ndimage.measurements import label as lb
 import pandas as pd
 
 

requirements.txt

@@ -2,7 +2,7 @@ pillow>=7.1.2
 threadpoolctl
 scikit-learn
 numpy>=1.10.2
-scipy
+scipy>=1.0.0
 scikit-image
 scikit-learn
 unittest2

setup.py

@@ -12,7 +12,7 @@
       install_requires=[
             "pillow>=7.1.2",
             "numpy>=1.10.2",
-            "scipy",
+            "scipy>=1.0.0",
             "scikit-image",
             "scikit-learn",
             "future",