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20 Open 101 Closed
20 Open 101 Closed
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Issues list

Warning and then Error for out of bounds issue
#176 opened Feb 3, 2025 by murphymadeleine21
3
Error in the assign_grnas() step
#162 opened Dec 19, 2024 by Hyunsoo7268
6
--threshold parameter in Nextflow pipeline
#159 opened Dec 5, 2024 by nhu-github
1
Check and fix multicollinearity for association analysis and gRNA assignment
#146 opened Sep 17, 2024 by nhu-github
7
Add feature that automatically removes nested categorical covariates enhancement New feature or request
#138 opened Jul 28, 2024 by ekatsevi
Error in eigen(Zt_wZ, symmetric = TRUE)
#135 opened Jul 9, 2024 by Yuanca9
4
Allow users to specify their own gRNA assignments rather than having sceptre compute them enhancement New feature or request
#133 opened Jul 4, 2024 by ekatsevi
Add feature to track version of sceptre used to create sceptre object enhancement New feature or request
#132 opened Jul 4, 2024 by ekatsevi
Please consider using parallelly::availableCores() instead of parallel::detectCores()
#128 opened May 31, 2024 by HenrikBengtsson
2
Add module for computing the top k PCs of the response matrix and adding the PCs as covariates.
#125 opened May 1, 2024 by timothy-barry
Regenerate example high-MOI data using ref genome 37; update book to use ref genome 37 in construct_cis_pairs()
#124 opened Apr 30, 2024 by timothy-barry
Fix the gene position data frame in the high-MOI example
#115 opened Apr 25, 2024 by timothy-barry
Add more caching enhancement New feature or request
#112 opened Apr 14, 2024 by ekatsevi
1
Add continuous integration and code coverage badge to github
#102 opened Feb 29, 2024 by jdeu1023
@jdeu1023
Consider improving the efficiency of negative control pair construction for high-MOI data out-of-core.
#99 opened Feb 14, 2024 by timothy-barry
@timothy-barry
Add option to apply absolute QC thresholds, rather than quantiles enhancement New feature or request
#88 opened Jan 29, 2024 by ekatsevi
Make the links on the webpage to the e-book open new tabs
#82 opened Jan 18, 2024 by ekatsevi
@jdeu1023
Check that passed arguments are of the correct types
#74 opened Jan 18, 2024 by ekatsevi
Add parallel functionality for Windows
#55 opened Sep 8, 2023 by jdeu1023
Add an option to run a standard GLM score test
#29 opened Jun 2, 2023 by timothy-barry
@ekatsevi
ProTip! Updated in the last three days: updated:>2025-02-16.