spell check

src/ontology/fbbt-edit.obo

@@ -72798,7 +72798,7 @@ property_value: http://purl.org/dc/terms/date "2018-09-20T14:09:56Z" xsd:dateTim
 id: FBbt:00047738
 name: larval subesophageal Capability neuron
 def: "Larval Capability-releasing neuron with its cell body in the posterior medial labial neuromere (Siegmund and Korge, 2001; Kean et al., 2002; Huckesfeld et al., 2021). There is one of these cells on each side, with a large cell body (Kean et al., 2002; Huckesfeld et al., 2021). It develops from neuroblast NB5-3 during embryogenesis (Gabilondo et al., 2011). Its axon runs on an outwardly curved path toward the dorsal midline, crosses it, and projects to the cerebral ganglion before joining the nervus corporis cardiaci (Siegmund and Korge, 2001; Kean et al., 2002). It has peptide release sites in the corpus cardiacum and the aorta (Huckesfeld et al., 2021)." [FlyBase:FBrf0134726, FlyBase:FBrf0146873, FlyBase:FBrf0213290, FlyBase:FBrf0249161]
-comment: These were the only cells in the subesophageal ganglion to stain with an antibody against a linking region of the Capability prepropeptide (Kean et al., 2002). Suspected by Park et al. (2008) - FBrf0210278 to be the same two cells that express FMRFa, but Gabilondo et al. (2011) say no co-localization of Capa and FRMFa antibody staining.
+comment: These were the only cells in the subesophageal ganglion to stain with an antibody against a linking region of the Capability prepropeptide (Kean et al., 2002). Suspected by Park et al. (2008) - FBrf0210278 to be the same two cells that express FMRFa, but Gabilondo et al. (2011) say no co-localization of Capa and FMRFa antibody staining.
 synonym: "larval corpus cardiacum innervating neuron CC-MS 2" EXACT [FlyBase:FBrf0134726, FlyBase:FBrf0249161]
 synonym: "larval corpus cardiacum innervating neurosecretory neuron of the medial subesophageal ganglion 2" EXACT [FlyBase:FBrf0134726]
 synonym: "larval SECA neuron" EXACT [FlyBase:FBrf0213290]
@@ -83232,7 +83232,7 @@ property_value: http://purl.org/dc/terms/date "2020-01-20T16:10:59Z" xsd:dateTim
 id: FBbt:00048674
 name: larval A26f neuron
 def: "Larval GABAergic premotor neuron of the ventral nerve cord (Zwart et al., 2016; Liu et al., 2023). From a dorsolateral soma, it extends ventromedially to the midline, where a branch extends dorsally on either side (Zwart et al., 2016). It then extends further contralaterally, mirroring the ipsilateral circular shape of the neuron (Zwart et al., 2016). Its medial branches mainly consist of input sites (Liu et al., 2023). On the contralateral side, a branch with presynapses extends anteriorly (Zarin et al., 2019), following the DL tract to span multiple neuromeres (Liu et al., 2023)." [FlyBase:FBrf0233076, FlyBase:FBrf0244727, FlyBase:FBrf0257210]
-comment: Reported to be corazoninergic in Zarin et al. (2019), but Liu et al. (2023) show that they are GABAergic and not corazoninergic.
+comment: Reported to be Corazonin neurons in Zarin et al. (2019), but Liu et al. (2023) show that they are GABAergic and not do not secrete Corazonin.
 is_a: FBbt:00005125 ! interneuron
 is_a: FBbt:00047097 ! primary neuron
 relationship: BFO:0000050 FBbt:00001919 ! part of larval central nervous system
@@ -91778,7 +91778,7 @@ property_value: http://purl.org/dc/terms/date "2020-05-01T12:00:00Z" xsd:dateTim
 [Term]
 id: FBbt:00049436
 name: medial antennal lobe tract projection neuron 7
-def: "Adult unlitateral lateral horn input neuron that has its dendrites predominantly within the antennal lobe and fasciculates with the medial antennal lobe tract (Frechter et al., 2019). It innervates the medial lateral horn and a region just proximal to it (Frechter et al., 2019)." [FlyBase:FBrf0242628]
+def: "Adult unilateral lateral horn input neuron that has its dendrites predominantly within the antennal lobe and fasciculates with the medial antennal lobe tract (Frechter et al., 2019). It innervates the medial lateral horn and a region just proximal to it (Frechter et al., 2019)." [FlyBase:FBrf0242628]
 synonym: "adult AL-mALT-PN7 neuron" EXACT [FlyBase:FBrf0242628]
 relationship: RO:0013003 FBbt:00007053 ! sends synaptic output to region adult lateral horn
 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1373-1705
@@ -111950,7 +111950,7 @@ property_value: http://purl.org/dc/terms/date "2021-10-22T12:00:00Z" xsd:dateTim
 [Term]
 id: FBbt:00051882
 name: adult foxglove subesophageal neuron
-def: "Adult interneuron with its soma in the lateral gnathal ganglion (Sterne et al., 2021). It has dendritic arborization in the prow and flange, axonal arborization in the vest, saddle, cantle and superior posterior slope and both dendritic and axonal arborization in the gnathal ganglion (Sterne et al., 2021). It is bilateral, but most of its innervation is in the ipsilateral hemisphere (Sterne et al., 2021). It is predicetd to be a GAGBAergic primary neuron (Schlegel et al., 2024; Eckstein et al., 2024). There are 2 of these cells per organism (Schlegel et al., 2024)." [FlyBase:FBrf0251280, FlyBase:FBrf0259490, FlyBase:FBrf0260535]
+def: "Adult interneuron with its soma in the lateral gnathal ganglion (Sterne et al., 2021). It has dendritic arborization in the prow and flange, axonal arborization in the vest, saddle, cantle and superior posterior slope and both dendritic and axonal arborization in the gnathal ganglion (Sterne et al., 2021). It is bilateral, but most of its innervation is in the ipsilateral hemisphere (Sterne et al., 2021). It is predicted to be a GABAergic primary neuron (Schlegel et al., 2024; Eckstein et al., 2024). There are 2 of these cells per organism (Schlegel et al., 2024)." [FlyBase:FBrf0251280, FlyBase:FBrf0259490, FlyBase:FBrf0260535]
 comment: FlyWire CB0890 mapped to foxglove in Shiu et al. (2024) - FBrf0260565 supplement.
 synonym: "adult CB0890 neuron" EXACT [FlyBase:FBrf0260565]
 is_a: FBbt:00005125 ! interneuron
@@ -125484,7 +125484,7 @@ property_value: http://purl.org/dc/terms/date "2025-01-28T17:15:44Z" xsd:dateTim
 [Term]
 id: FBbt:00053361
 name: adult fruitless aIP-g type 1 (female) neuron
-def: "Adult female aIP-g neuron with a bifuraction above the mushroom body medial lobe and a large amount of branching in the superior intermediate and medial protocerebrum (Schretter et al., 2020). There are four of these cells per hemisphere (Schretter et al., 2020)." [FlyBase:FBrf0247707]
+def: "Adult female aIP-g neuron with a bifurcation above the mushroom body medial lobe and a large amount of branching in the superior intermediate and medial protocerebrum (Schretter et al., 2020). There are four of these cells per hemisphere (Schretter et al., 2020)." [FlyBase:FBrf0247707]
 synonym: "adult female aIPg type 1 neuron" EXACT [FlyBase:FBrf0247707]
 synonym: "adult female fruitless aIPg1 neuron" EXACT [FlyBase:FBrf0247707]
 is_a: FBbt:00110443 ! adult fruitless aIP-g (female) neuron
@@ -125496,7 +125496,7 @@ property_value: http://purl.org/dc/terms/date "2025-02-04T11:48:41Z" xsd:dateTim
 [Term]
 id: FBbt:00053362
 name: adult fruitless aIP-g type 2 (female) neuron
-def: "Adult female aIP-g neuron with no major bifuraction above the mushroom body medial lobe and less extensive projections within the superior medial protocerebrum, compared to aIP-g type 1 (Schretter et al., 2020). Its ventral arbors (below the mushroom body pedunculus) extend further towards the midline than those of aIP-g type 1, reaching the vest (Schretter et al., 2020). There are five of these cells per hemisphere (Schretter et al., 2020)." [FlyBase:FBrf0247707]
+def: "Adult female aIP-g neuron with no major bifurcation above the mushroom body medial lobe and less extensive projections within the superior medial protocerebrum, compared to aIP-g type 1 (Schretter et al., 2020). Its ventral arbors (below the mushroom body pedunculus) extend further towards the midline than those of aIP-g type 1, reaching the vest (Schretter et al., 2020). There are five of these cells per hemisphere (Schretter et al., 2020)." [FlyBase:FBrf0247707]
 synonym: "adult female aIPg type 2 neuron" EXACT [FlyBase:FBrf0247707]
 synonym: "adult female fruitless aIPg2 neuron" EXACT [FlyBase:FBrf0247707]
 is_a: FBbt:00110443 ! adult fruitless aIP-g (female) neuron
@@ -134070,7 +134070,7 @@ property_value: http://purl.org/dc/terms/date "2022-07-05T13:30:44Z" xsd:dateTim
 [Term]
 id: FBbt:00058806
 name: adult ptilinal muscle
-def: "Muscle of the adult that is associated with the ptilinium (Atkins, 1949). Most of these are temporary eclosion muscles that degenerate within a few days of eclosion (Atkins, 1949)." [FlyBase:FBrf0007310]
+def: "Muscle of the adult that is associated with the ptilinum (Atkins, 1949). Most of these are temporary eclosion muscles that degenerate within a few days of eclosion (Atkins, 1949)." [FlyBase:FBrf0007310]
 subset: cur
 synonym: "muscle of the ptilinum" EXACT []
 synonym: "skeletal muscle of dorsal head" EXACT []
@@ -171908,7 +171908,7 @@ property_value: http://purl.org/dc/terms/date "2020-07-30T12:00:00Z" xsd:dateTim
 [Term]
 id: FBbt:20001289
 name: adult inferior bridge neuron 112
-def: "Adult glutamatergic visual centrifugal neuron with its soma in the brain, ventral-lateral to the anterior optic tubercle (Schlegel et al., 2024; Schretter et al., 2025). It extends to the contralateral hemisphere then bifurcates, with a branch looping round ventrally back to the ipsilateral hemisphere and producing roughly symmetrical arbors in the central brain (Schretter et al., 2025). The other branch innervates the contralateral anterior optic tubercle and lobula, where it has most of its presynapses (Schretter et al., 2025). Its inputs are mainly in the central brain, including the superior medial and intermediate protocerebrum (Schlegel et al., 2024; Dorkenwald et al., 2024). It is predicted to be a primary neuron (Schlegel et al., 2024). There is one of these cells per hemishpere (Schlegel et al., 2024; Schretter et al., 2025)." [FlyBase:FBrf0246888, FlyBase:FBrf0260535, FlyBase:FBrf0260546, FlyBase:FBrf0261440]
+def: "Adult glutamatergic visual centrifugal neuron with its soma in the brain, ventral-lateral to the anterior optic tubercle (Schlegel et al., 2024; Schretter et al., 2025). It extends to the contralateral hemisphere then bifurcates, with a branch looping round ventrally back to the ipsilateral hemisphere and producing roughly symmetrical arbors in the central brain (Schretter et al., 2025). The other branch innervates the contralateral anterior optic tubercle and lobula, where it has most of its presynapses (Schretter et al., 2025). Its inputs are mainly in the central brain, including the superior medial and intermediate protocerebrum (Schlegel et al., 2024; Dorkenwald et al., 2024). It is predicted to be a primary neuron (Schlegel et al., 2024). There is one of these cells per hemisphere (Schlegel et al., 2024; Schretter et al., 2025)." [FlyBase:FBrf0246888, FlyBase:FBrf0260535, FlyBase:FBrf0260546, FlyBase:FBrf0261440]
 comment: Uncharacterized putative cell type based on Hemibrain data (Scheffer et al., 2020) and updated using FlyWire (FAFB) data (Dorkenwald et al., 2024). Soma locations are based on the closest annotated neuropil region. Pre- or post-synapse locations are the fewest regions that collectively contain at least 80 percent of all pre- or post-synapses of these neurons in FlyWire. Other annotations are based on annotations in FlyWire and are available in the supplemental material of Schlegel et al. (2024). Identified at light level by Schretter et al. (2025).
 is_a: FBbt:00047097 ! primary neuron
 is_a: FBbt:00059244 ! adult visual centrifugal neuron
@@ -172141,7 +172141,7 @@ replaced_by: FBbt:00110985
 [Term]
 id: FBbt:20003899
 name: adult spirit subesophageal neuron
-def: "Adult neuron with its soma in the lateral subesophageal zone (Sterne et al., 2021).  It has pre- and  post-synapses ipsilaterally in the gnathal ganglia as well as a branch receiving input from the ipsilateral inferior posterior slope (Schlegel et al., 2024). It crosses the midline and has inputs and outputs in the contralateral inferior posterior slope (Schlegel et al., 2024). It is predicted to be a cholinergic primary neuron (Schlegel et al., 2024; Eckstein et al., 2024). There are 2 of these cells per organism (Schlegel et al., 2024)." [FlyBase:FBrf0251280, FlyBase:FBrf0259490, FlyBase:FBrf0260535]
+def: "Adult neuron with its soma in the lateral subesophageal zone (Sterne et al., 2021). It has pre- and post-synapses ipsilaterally in the gnathal ganglia as well as a branch receiving input from the ipsilateral inferior posterior slope (Schlegel et al., 2024). It crosses the midline and has inputs and outputs in the contralateral inferior posterior slope (Schlegel et al., 2024). It is predicted to be a cholinergic primary neuron (Schlegel et al., 2024; Eckstein et al., 2024). There are 2 of these cells per organism (Schlegel et al., 2024)." [FlyBase:FBrf0251280, FlyBase:FBrf0259490, FlyBase:FBrf0260535]
 comment: FlyWire CB0045 mapped to Sterne et al. (2021) spirit neuron by Shiu et al. (2024) - FBrf0260565. This was identified at light level but not well described/analyzed due to lack of MCFO. Most of this cell description is based on FlyWire data and the supplemental material of Schlegel et al. (2024).
 synonym: "adult CB0045 neuron" EXACT [FlyBase:FBrf0260565]
 is_a: FBbt:00047097 ! primary neuron

tools/dictionaries/standard.dict

@@ -3273,6 +3273,10 @@ TuBua
 TuBui
 TuBus
 TuTu
+TuTuA
+TuTuAa
+TuTuAb
+TuTuB
 Tuesday
 Tuesday's
 Tuesdays