implement delta matrix #8
Conversation
WalkthroughThe recent updates enhance the sparse matrix functionality in the codebase, focusing on the Changes
Sequence Diagram(s)sequenceDiagram
participant User
participant DeltaMatrix
participant SparseMatrix
User ->> DeltaMatrix: Create new DeltaMatrix
DeltaMatrix ->> User: DeltaMatrix instance
User ->> DeltaMatrix: Perform operations (add/remove elements, resize, etc.)
User ->> SparseMatrix: Create new SparseMatrix
SparseMatrix ->> User: SparseMatrix instance
User ->> SparseMatrix: Perform operations (set/extract elements, etc.)
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Review Status
Actionable comments generated: 1
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Files ignored due to path filters (1)
Cargo.tomlis excluded by:!**/*.toml
Files selected for processing (11)
- src/binding/graph.rs (3 hunks)
- src/graph/matrix/delta_matrix.rs (1 hunks)
- src/graph/matrix/delta_matrix_iter.rs (1 hunks)
- src/graph/matrix/ffi.rs (1 hunks)
- src/graph/matrix/mod.rs (1 hunks)
- src/graph/matrix/sparse_matrix.rs (1 hunks)
- src/graph/matrix/sparse_matrix_iter.rs (1 hunks)
- src/graph/mod.rs (1 hunks)
- src/lib.rs (1 hunks)
- src/undo_log/mod.rs (1 hunks)
- src/undo_log/undo_log.rs (3 hunks)
Additional comments: 18
src/undo_log/mod.rs (1)
- 6-6: The reordering of module declarations is a straightforward change and does not impact the functionality or accessibility of the modules. It's good practice to keep the module structure organized for better readability.
src/graph/mod.rs (1)
- 6-6: Adding the
matrixmodule undergraphis a logical extension of the library's functionality, focusing on matrix operations related to graph processing. This organization enhances the project's structure and readability.src/graph/matrix/mod.rs (1)
- 6-11: The introduction of
delta_matrix,sparse_matrix, and their iterators, along with the GraphBLAS module, significantly enhances the library's matrix operation capabilities. Makingdelta_matrixandsparse_matrixpublic is appropriate, as these are core functionalities that may be utilized externally. This organization and expansion align well with the library's objectives.src/lib.rs (1)
- 10-10: Adding the
graphmodule at the root level is a significant and logical enhancement to the library, indicating a focused expansion on graph-related functionalities. This organization supports the library's objectives and improves its structure.src/graph/matrix/delta_matrix_iter.rs (1)
- 10-85: The
DeltaMatrixIterstruct provides comprehensive iterator functionality forDeltaMatrix. It's crucial to ensure safety by adding checks before usingunwrapto avoid potential panics when the iterator is not properly attached. Consider scenarios where the iterator might be used without being attached and handle these gracefully.src/graph/matrix/sparse_matrix_iter.rs (1)
- 20-105: The
SparseMatrixIterstruct provides essential iterator functionality forSparseMatrix. While the use ofunsafeblocks is necessary for FFI calls, ensure that these blocks are minimized and all safety preconditions are met. Additionally, consider more robust error handling around FFI calls to improve safety and maintainability.src/graph/matrix/ffi.rs (1)
- 18-333: The FFI functions introduced for
DeltaMatrixandDeltaMatrixIteroperations are well-implemented, with careful handling of unsafe code and FFI boundaries. Ensure that all safety preconditions are met when interfacing with C code, especially when dereferencing raw pointers. Thorough testing of the FFI interface is recommended to ensure robustness and safety.src/graph/matrix/sparse_matrix.rs (11)
- 24-29: The
grb_check!macro usesdebug_assert_eq!to check forGrB_Info_GrB_SUCCESS. While this is useful for debug builds, consider the implications for release builds wheredebug_assert_eq!statements are not evaluated. This could lead to silent failures in production. It might be beneficial to have a fallback error handling mechanism for release builds or to document this behavior clearly for users of the library.- 31-40: The
Dropimplementation forSparseMatrixcorrectly frees the underlyingGrB_MatrixusingGrB_Matrix_free. This is a good practice ensuring that resources are properly released when aSparseMatrixinstance is dropped. However, ensure that theGrB_Matrix_freefunction is capable of handling matrices that have already been freed or are null, to prevent double-free errors or undefined behavior.- 49-52: Creating a new
SparseMatrixinvolves directly calling GraphBLAS functions and managing uninitialized memory. This is done safely within anunsafeblock, which is appropriate given the FFI nature of the operations. However, consider encapsulating GraphBLAS interactions further to minimize the spread ofunsafecode, enhancing maintainability and reducing the risk of memory safety issues.- 66-73: The methods
set_always_hyperandset_sparsitydirectly manipulate matrix options using GraphBLAS functions. It's good practice to encapsulate such operations, making the API easier to use and less error-prone. Ensure that these settings are appropriately documented, especially since they can significantly affect the performance and behavior of matrix operations.- 129-145: The
copymethod's implementation is interesting as it usesGrB_Matrix_applywithGrB_IDENTITY_BOOLandGrB_DESC_Rto copy the matrix whennvalsis greater than 0, and callsclearotherwise. This is a clever use of GraphBLAS operations to achieve the copy functionality. However, ensure that this approach is efficient compared to other potential methods (e.g., usingGrB_Matrix_dup) and that it correctly handles all edge cases, such as copying an empty matrix.- 149-168: The method
extract_element_booldemonstrates careful error handling by checking the return value ofGrB_Matrix_extractElement_BOOLand returningNoneforGrB_Info_GrB_NO_VALUE. This is a good practice, as it gracefully handles the case where an element does not exist in the matrix. However, the use ofdebug_assert!for unexpected error codes might be too lenient for release builds where these assertions are disabled. Consider logging or handling these unexpected cases more explicitly.- 183-190: The method
remove_elementcorrectly usesGrB_Matrix_removeElementto remove an element from the matrix. This is straightforward and aligns with GraphBLAS API usage. However, consider adding error handling or documentation to clarify how this method behaves when attempting to remove an element that does not exist, ensuring users of the library have clear expectations.- 193-204: The
waitmethod usesGrB_Matrix_waitwithGrB_WaitMode_GrB_MATERIALIZE, which is appropriate for ensuring that all pending operations on the matrix are completed. This is crucial for correctness in concurrent or multi-threaded environments. Ensure that the implications of forcing materialization are well-documented, especially regarding performance and memory usage.- 207-229: The
assignandassign_scalarmethods provide functionality for bulk updates to the matrix, which can be highly efficient for certain operations. It's good to see these methods leveraging the GraphBLAS API for high-level matrix manipulations. Ensure that the usage of these methods is accompanied by clear documentation, especially regarding the behavior and performance implications of themaskanddescparameters.- 257-280: The
mxm(matrix-matrix multiplication) andelement_wise_addmethods are central to matrix operations, leveraging the power of GraphBLAS for efficient computations. Ensure that these methods are thoroughly tested, especially with various semirings and descriptor options, to guarantee correctness across a wide range of use cases. Additionally, consider the performance implications of these operations and document best practices for their use.- 306-321: The
transpose,extract_row, andextract_colmethods provide essential functionality for matrix manipulation and access. These methods are well-implemented, making good use of GraphBLAS operations. Ensure that the behavior of these methods, especiallytranspose, is clearly documented, including any limitations or performance considerations.
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Actionable comments generated: 0
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Files selected for processing (3)
- src/graph/matrix/delta_matrix.rs (1 hunks)
- src/graph/matrix/ffi.rs (1 hunks)
- src/graph/matrix/sparse_matrix.rs (1 hunks)
Files skipped from review as they are similar to previous changes (3)
- src/graph/matrix/delta_matrix.rs
- src/graph/matrix/ffi.rs
- src/graph/matrix/sparse_matrix.rs
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Actionable comments generated: 0
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Files selected for processing (5)
- src/graph/matrix/delta_matrix.rs (1 hunks)
- src/graph/matrix/delta_matrix_iter.rs (1 hunks)
- src/graph/matrix/ffi.rs (1 hunks)
- src/graph/matrix/sparse_matrix.rs (1 hunks)
- src/undo_log/ffi.rs (9 hunks)
Files skipped from review as they are similar to previous changes (4)
- src/graph/matrix/delta_matrix.rs
- src/graph/matrix/delta_matrix_iter.rs
- src/graph/matrix/ffi.rs
- src/graph/matrix/sparse_matrix.rs
Additional comments (12)
src/undo_log/ffi.rs (12)
- 24-24: The change from
log.as_mut().unwrap()to(&mut *log)simplifies the code by avoiding unnecessary unwrapping. This is a safe operation given the context thatlogis always expected to be a valid mutable pointer in these FFI functions.- 32-32: Similar to the previous comment, this change simplifies the code and is safe under the assumption that
logis a valid mutable pointer.- 46-46: This change, like the others, simplifies the code. However, it's important to ensure that the safety assumptions about
logbeing a valid mutable pointer are always met in the usage of these FFI functions.- 58-58: The simplification here is consistent with the other changes. It's crucial to maintain the invariant that
logis a valid mutable pointer across all these functions.- 67-67: This change is approved for the same reasons as the previous ones. Ensuring
logis always a valid mutable pointer is essential for the safety of these operations.- 76-76: The simplification achieved by this change is consistent with the rest of the file. The assumption of
logbeing a valid mutable pointer must be carefully managed.- 86-86: This change, while simplifying the code, also relies on the assumption that
logis a valid mutable pointer. It's approved under this condition.- 99-99: The change is approved for simplifying the code. The safety of these operations hinges on the validity of the
logpointer.- 111-111: This change is consistent with the simplification theme in the file. The assumption of
logbeing a valid mutable pointer is crucial.- 119-119: The simplification here is approved. It's important to ensure that
logis always a valid mutable pointer when these functions are called.- 130-130: This change simplifies the code and is approved, assuming that
logis always a valid mutable pointer in the context of these FFI functions.- 138-138: The simplification of the code is consistent with the other changes and is approved. The dropping of
Box::from_raw(log)after the rollback operation is a critical step in managing the memory lifecycle of theUndoLogobject.
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Actionable comments generated: 0
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Files selected for processing (2)
- src/graph/matrix/delta_matrix.rs (1 hunks)
- src/graph/matrix/sparse_matrix.rs (1 hunks)
Files skipped from review as they are similar to previous changes (2)
- src/graph/matrix/delta_matrix.rs
- src/graph/matrix/sparse_matrix.rs
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Actionable comments generated: 0
Configuration used: CodeRabbit UI
Files selected for processing (4)
- src/graph/matrix/delta_matrix.rs (1 hunks)
- src/graph/matrix/ffi.rs (1 hunks)
- src/graph/matrix/sparse_matrix.rs (1 hunks)
- src/graph/matrix/sparse_matrix_iter.rs (1 hunks)
Files skipped from review as they are similar to previous changes (4)
- src/graph/matrix/delta_matrix.rs
- src/graph/matrix/ffi.rs
- src/graph/matrix/sparse_matrix.rs
- src/graph/matrix/sparse_matrix_iter.rs
src/graph/matrix/ffi.rs
Outdated
| match (&mut *c).transposed() { | ||
| Some(m) => m.as_mut() as *mut DeltaMatrix, | ||
| None => std::ptr::null_mut(), | ||
| } |
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Handle potential null pointer dereference in RG_Matrix_getTranspose.
The function dereferences the pointer c without checking if it's null. This could lead to undefined behavior if a null pointer is passed. Consider adding a check to ensure c is not null before dereferencing.
src/graph/matrix/ffi.rs
Outdated
| c: _Matrix, | ||
| nrows: GrB_Index, | ||
| ncols: GrB_Index, | ||
| ) { | ||
| (&mut *c).synchronize(nrows, ncols); | ||
| } |
There was a problem hiding this comment.
Missing return type for RG_Matrix_synchronize.
The function RG_Matrix_synchronize lacks a return statement and return type, which is inconsistent with other functions in this file that return GrB_Info. This might lead to unexpected behavior. Consider adding a return type and handling the function's success or failure appropriately.
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Actionable comments posted: 3
Review Details
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Review profile: CHILL
Files selected for processing (3)
- src/graph/matrix/delta_matrix.rs (1 hunks)
- src/graph/matrix/delta_matrix_iter.rs (1 hunks)
- src/graph/matrix/sparse_matrix_iter.rs (1 hunks)
Files not reviewed due to errors (1)
- src/graph/matrix/delta_matrix_iter.rs (no review received)
Files skipped from review as they are similar to previous changes (1)
- src/graph/matrix/delta_matrix.rs
Additional comments not posted (2)
src/graph/matrix/sparse_matrix_iter.rs (2)
19-22: The structSparseMatrixIteris well-defined and straightforward.
24-44: Thenewfunction is correctly implemented with proper error handling. Consider adding documentation explaining the use ofunsafehere.
| pub fn next_bool( | ||
| &mut self, | ||
| max_row: u64, | ||
| ) -> Option<(u64, u64, bool)> { | ||
| unsafe { | ||
| if self.depleted { | ||
| return None; | ||
| } | ||
|
|
||
| let row = GxB_rowIterator_getRowIndex(&mut self.it); | ||
| let col = GxB_rowIterator_getColIndex(&mut self.it); | ||
| let val = GxB_Iterator_get_BOOL(&mut self.it); | ||
|
|
||
| let mut info = GxB_rowIterator_nextCol(&mut self.it); | ||
| if info != GrB_Info::GrB_SUCCESS { | ||
| info = GxB_rowIterator_nextRow(&mut self.it); | ||
|
|
||
| while info == GrB_Info::GrB_NO_VALUE | ||
| && GxB_rowIterator_getRowIndex(&mut self.it) < max_row | ||
| { | ||
| info = GxB_rowIterator_nextRow(&mut self.it); | ||
| } | ||
|
|
||
| self.depleted = info != GrB_Info::GrB_SUCCESS | ||
| || GxB_rowIterator_getRowIndex(&mut self.it) > max_row; | ||
| } | ||
|
|
||
| Some((row, col, val)) | ||
| } |
There was a problem hiding this comment.
Optimize the handling of GrB_Info::GrB_NO_VALUE in the next_bool function to reduce complexity.
- while info == GrB_Info::GrB_NO_VALUE && GxB_rowIterator_getRowIndex(&mut self.it) < max_row {
- info = GxB_rowIterator_nextRow(&mut self.it);
- }
+ do {
+ info = GxB_rowIterator_nextRow(&mut self.it);
+ } while (info == GrB_Info::GrB_NO_VALUE && GxB_rowIterator_getRowIndex(&mut self.it) < max_row);Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation.
| pub fn next_bool( | |
| &mut self, | |
| max_row: u64, | |
| ) -> Option<(u64, u64, bool)> { | |
| unsafe { | |
| if self.depleted { | |
| return None; | |
| } | |
| let row = GxB_rowIterator_getRowIndex(&mut self.it); | |
| let col = GxB_rowIterator_getColIndex(&mut self.it); | |
| let val = GxB_Iterator_get_BOOL(&mut self.it); | |
| let mut info = GxB_rowIterator_nextCol(&mut self.it); | |
| if info != GrB_Info::GrB_SUCCESS { | |
| info = GxB_rowIterator_nextRow(&mut self.it); | |
| while info == GrB_Info::GrB_NO_VALUE | |
| && GxB_rowIterator_getRowIndex(&mut self.it) < max_row | |
| { | |
| info = GxB_rowIterator_nextRow(&mut self.it); | |
| } | |
| self.depleted = info != GrB_Info::GrB_SUCCESS | |
| || GxB_rowIterator_getRowIndex(&mut self.it) > max_row; | |
| } | |
| Some((row, col, val)) | |
| } | |
| pub fn next_bool( | |
| &mut self, | |
| max_row: u64, | |
| ) -> Option<(u64, u64, bool)> { | |
| unsafe { | |
| if self.depleted { | |
| return None; | |
| } | |
| let row = GxB_rowIterator_getRowIndex(&mut self.it); | |
| let col = GxB_rowIterator_getColIndex(&mut self.it); | |
| let val = GxB_Iterator_get_BOOL(&mut self.it); | |
| let mut info = GxB_rowIterator_nextCol(&mut self.it); | |
| if info != GrB_Info::GrB_SUCCESS { | |
| info = GxB_rowIterator_nextRow(&mut self.it); | |
| do { | |
| info = GxB_rowIterator_nextRow(&mut self.it); | |
| } while (info == GrB_Info::GrB_NO_VALUE | |
| && GxB_rowIterator_getRowIndex(&mut self.it) < max_row); | |
| self.depleted = info != GrB_Info::GrB_SUCCESS | |
| || GxB_rowIterator_getRowIndex(&mut self.it) > max_row; | |
| } | |
| Some((row, col, val)) | |
| } |
| pub fn next_u64( | ||
| &mut self, | ||
| max_row: u64, | ||
| ) -> Option<(u64, u64, u64)> { | ||
| unsafe { | ||
| if self.depleted { | ||
| return None; | ||
| } | ||
|
|
||
| let row = GxB_rowIterator_getRowIndex(&mut self.it); | ||
| let col = GxB_rowIterator_getColIndex(&mut self.it); | ||
| let val = GxB_Iterator_get_UINT64(&mut self.it); | ||
|
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| let mut info = GxB_rowIterator_nextCol(&mut self.it); | ||
| if info != GrB_Info::GrB_SUCCESS { | ||
| info = GxB_rowIterator_nextRow(&mut self.it); | ||
|
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||
| while info == GrB_Info::GrB_NO_VALUE | ||
| && GxB_rowIterator_getRowIndex(&mut self.it) < max_row | ||
| { | ||
| info = GxB_rowIterator_nextRow(&mut self.it); | ||
| } | ||
|
|
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| self.depleted = info != GrB_Info::GrB_SUCCESS | ||
| || GxB_rowIterator_getRowIndex(&mut self.it) > max_row; | ||
| } | ||
|
|
||
| Some((row, col, val)) | ||
| } |
There was a problem hiding this comment.
Apply the same optimization as suggested for next_bool to improve the handling of GrB_Info::GrB_NO_VALUE in the next_u64 function.
- while info == GrB_Info::GrB_NO_VALUE && GxB_rowIterator_getRowIndex(&mut self.it) < max_row {
- info = GxB_rowIterator_nextRow(&mut self.it);
- }
+ do {
+ info = GxB_rowIterator_nextRow(&mut self.it);
+ } while (info == GrB_Info::GrB_NO_VALUE && GxB_rowIterator_getRowIndex(&mut self.it) < max_row);Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation.
| pub fn next_u64( | |
| &mut self, | |
| max_row: u64, | |
| ) -> Option<(u64, u64, u64)> { | |
| unsafe { | |
| if self.depleted { | |
| return None; | |
| } | |
| let row = GxB_rowIterator_getRowIndex(&mut self.it); | |
| let col = GxB_rowIterator_getColIndex(&mut self.it); | |
| let val = GxB_Iterator_get_UINT64(&mut self.it); | |
| let mut info = GxB_rowIterator_nextCol(&mut self.it); | |
| if info != GrB_Info::GrB_SUCCESS { | |
| info = GxB_rowIterator_nextRow(&mut self.it); | |
| while info == GrB_Info::GrB_NO_VALUE | |
| && GxB_rowIterator_getRowIndex(&mut self.it) < max_row | |
| { | |
| info = GxB_rowIterator_nextRow(&mut self.it); | |
| } | |
| self.depleted = info != GrB_Info::GrB_SUCCESS | |
| || GxB_rowIterator_getRowIndex(&mut self.it) > max_row; | |
| } | |
| Some((row, col, val)) | |
| } | |
| pub fn next_u64( | |
| &mut self, | |
| max_row: u64, | |
| ) -> Option<(u64, u64, u64)> { | |
| unsafe { | |
| if self.depleted { | |
| return None; | |
| } | |
| let row = GxB_rowIterator_getRowIndex(&mut self.it); | |
| let col = GxB_rowIterator_getColIndex(&mut self.it); | |
| let val = GxB_Iterator_get_UINT64(&mut self.it); | |
| let mut info = GxB_rowIterator_nextCol(&mut self.it); | |
| if info != GrB_Info::GrB_SUCCESS { | |
| info = GxB_rowIterator_nextRow(&mut self.it); | |
| do { | |
| info = GxB_rowIterator_nextRow(&mut self.it); | |
| } while (info == GrB_Info::GrB_NO_VALUE | |
| && GxB_rowIterator_getRowIndex(&mut self.it) < max_row); | |
| self.depleted = info != GrB_Info::GrB_SUCCESS | |
| || GxB_rowIterator_getRowIndex(&mut self.it) > max_row; | |
| } | |
| Some((row, col, val)) | |
| } |
There was a problem hiding this comment.
Actionable comments posted: 16
Outside diff range and nitpick comments (1)
src/graph/matrix/delta_matrix.rs (1)
58-70: Ensure proper documentation for theDeltaMatrixstruct to explain its purpose and usage clearly.The documentation for
DeltaMatrixcould be enhanced to provide more details about its purpose and how it should be used, especially considering its complexity and the critical role it plays in managing sparse matrix operations with delta updates.
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Files selected for processing (4)
- clippy.toml (1 hunks)
- src/graph/matrix/delta_matrix.rs (1 hunks)
- src/graph/matrix/delta_matrix_iter.rs (1 hunks)
- src/graph/matrix/ffi.rs (1 hunks)
Files skipped from review due to trivial changes (1)
- clippy.toml
Files skipped from review as they are similar to previous changes (1)
- src/graph/matrix/delta_matrix_iter.rs
Additional comments not posted (1)
src/graph/matrix/delta_matrix.rs (1)
74-113: Review the initialization logic inDeltaMatrix::newto ensure it handles all edge cases, especially with transposed matrices.
| #[no_mangle] | ||
| unsafe extern "C" fn Delta_Matrix_getTranspose(c: _Matrix) -> _Matrix { | ||
| match (*c).transposed() { | ||
| Some(m) => m.as_mut() as *mut DeltaMatrix, | ||
| None => std::ptr::null_mut(), | ||
| } |
There was a problem hiding this comment.
Ensure null safety in Delta_Matrix_getTranspose.
The function Delta_Matrix_getTranspose returns a null pointer if the transpose operation fails. Ensure that the calling code checks for null pointers to avoid dereferencing null.
| pub fn element_wise_add( | ||
| &mut self, | ||
| semiring: GrB_Semiring, | ||
| m: &DeltaMatrix, | ||
| n: &DeltaMatrix, | ||
| ) { | ||
| match ( | ||
| m.delta_minus.nvals() > 0 || m.delta_plus.nvals() > 0, | ||
| n.delta_minus.nvals() > 0 || n.delta_plus.nvals() > 0, | ||
| ) { | ||
| (true, true) => { | ||
| self.matrix | ||
| .element_wise_add(None, Some(&m.export()), Some(&n.export()), semiring); | ||
| } | ||
| (true, false) => { | ||
| self.matrix | ||
| .element_wise_add(None, Some(&m.export()), Some(&n.matrix), semiring); | ||
| } | ||
| (false, true) => { | ||
| self.matrix | ||
| .element_wise_add(None, Some(&m.matrix), Some(&n.export()), semiring); | ||
| } | ||
| (false, false) => { | ||
| self.matrix | ||
| .element_wise_add(None, Some(&m.matrix), Some(&n.matrix), semiring); | ||
| } | ||
| } | ||
| } |
There was a problem hiding this comment.
Add tests for the element_wise_add method to ensure its functionality is thoroughly verified.
The element_wise_add method does not appear to have direct or indirect test coverage. It is crucial to add comprehensive tests to ensure its functionality is thoroughly verified.
| pub fn mxm( | ||
| &mut self, | ||
| semiring: GrB_Semiring, | ||
| m: &DeltaMatrix, | ||
| n: &DeltaMatrix, | ||
| ) { | ||
| unsafe { | ||
| let (mask, desc) = if n.delta_minus.nvals() > 0 { | ||
| let mut mask = SparseMatrix::new(GrB_BOOL, self.nrows(), self.ncols()); | ||
| mask.mxm( | ||
| None, | ||
| &m.matrix, | ||
| &n.delta_minus, | ||
| GxB_ANY_PAIR_BOOL, | ||
| null_mut(), | ||
| ); | ||
| if mask.nvals() > 0 { | ||
| (Some(mask), GrB_DESC_RSC) | ||
| } else { | ||
| (None, null_mut()) | ||
| } | ||
| } else { | ||
| (None, null_mut()) | ||
| }; | ||
|
|
||
| let accum = if n.delta_plus.nvals() > 0 { | ||
| let mut accum = SparseMatrix::new(GrB_BOOL, self.nrows(), self.ncols()); | ||
| accum.mxm(None, &m.matrix, &n.delta_plus, semiring, null_mut()); | ||
| if accum.nvals() > 0 { | ||
| Some(accum) | ||
| } else { | ||
| None | ||
| } | ||
| } else { | ||
| None | ||
| }; | ||
|
|
||
| self.matrix | ||
| .mxm(mask.as_ref(), &m.matrix, &n.matrix, semiring, desc); | ||
| if let Some(accum) = accum { | ||
| self.matrix | ||
| .element_wise_add(None, None, Some(&accum), GxB_ANY_PAIR_BOOL); | ||
| } | ||
| } | ||
| } |
There was a problem hiding this comment.
Add test cases for the mxm method to ensure it handles all edge cases and performs optimally.
The mxm method performs matrix multiplication considering delta matrices. This method involves multiple conditional branches and matrix operations, which are complex and error-prone. Review this method to ensure it handles all edge cases and performs optimally.
| pub fn export(&self) -> SparseMatrix { | ||
| let mut m = SparseMatrix::new(unsafe { GrB_BOOL }, self.nrows(), self.ncols()); | ||
| if self.delta_minus.nvals() > 0 { | ||
| m.transpose( | ||
| Some(&self.delta_minus), | ||
| null_mut(), | ||
| Some(&self.matrix), | ||
| unsafe { GrB_DESC_RSCT0 }, | ||
| ); | ||
| } else { | ||
| m.transpose(None, null_mut(), Some(&self.matrix), unsafe { | ||
| GrB_DESC_RT0 | ||
| }); | ||
| } | ||
| if self.delta_plus.nvals() > 0 { | ||
| m.element_wise_add(None, None, Some(&self.delta_plus), unsafe { | ||
| GxB_ANY_PAIR_BOOL | ||
| }); | ||
| } | ||
|
|
||
| m | ||
| } |
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Please add comprehensive tests for the export method to ensure its correctness and reliability, especially in scenarios involving complex delta states.
The export method combines various matrix states into a single matrix. This method is critical for ensuring data consistency and should be thoroughly tested to verify its correctness, particularly in scenarios involving complex delta states.
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Actionable comments posted: 10
Outside diff range and nitpick comments (1)
src/graph/matrix/ffi.rs (1)
29-34: Ensure null safety inDelta_Matrix_getTranspose.The function
Delta_Matrix_getTransposereturns a null pointer if the transpose operation fails. Ensure that the calling code checks for null pointers to avoid dereferencing null.
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Files selected for processing (3)
- src/graph/matrix/delta_matrix_iter.rs (1 hunks)
- src/graph/matrix/ffi.rs (1 hunks)
- src/graph/matrix/sparse_matrix_iter.rs (1 hunks)
Additional comments not posted (13)
src/graph/matrix/sparse_matrix_iter.rs (8)
24-24: Consider implementing the Iterator trait for SparseMatrixIter to allow idiomatic iteration.
46-72: Replacedebug_assert!with proper error handling to ensure robustness.
46-72: Optimize handling ofGrB_Info::GrB_NO_VALUEin the loop to reduce complexity.
24-43: Properly initializes iterator with error checks on C API calls, ensuring safety within an unsafe block.
75-99: Efficiently manages iterator state and progression with appropriate checks for exhaustion and invalid values.
102-107: Correctly retrieves the current row index, ensuring safety within an unsafe block.
110-115: Properly retrieves the current column index, safely encapsulated within an unsafe block.
118-123: Safely retrieves a UINT64 value from the iterator, utilizing the correct GraphBLAS function.src/graph/matrix/delta_matrix_iter.rs (5)
19-19: Consider implementing the Iterator trait for DeltaMatrixIter to allow idiomatic iteration.
61-66: Consider usingmap_orto avoid potential panic inis_attached.
69-73: Handle potentialNonecases initerate_row,iterate_range, andresetto avoid panic.Also applies to: 77-82, 156-157
85-114: Refactornext_boolto simplify logic and improve readability.
116-152: Refactornext_u64to simplify logic and improve readability.
| #[no_mangle] | ||
| unsafe extern "C" fn Delta_Matrix_new( | ||
| a: *mut _Matrix, | ||
| ty: GrB_Type, | ||
| nrows: GrB_Index, | ||
| ncols: GrB_Index, | ||
| transpose: bool, | ||
| ) -> GrB_Info { | ||
| *a = Box::into_raw(Box::new(DeltaMatrix::new(ty, nrows, ncols, transpose))); | ||
| GrB_Info::GrB_SUCCESS | ||
| } |
There was a problem hiding this comment.
Ensure proper error handling in Delta_Matrix_new.
The function Delta_Matrix_new creates a new DeltaMatrix instance and assumes it always succeeds by returning GrB_Info::GrB_SUCCESS. Consider adding error handling to manage potential failures in DeltaMatrix::new(), such as memory allocation failures.
| pub fn set_range( | ||
| &mut self, | ||
| min_row: u64, | ||
| max_row: u64, | ||
| ) { | ||
| unsafe { | ||
| match GxB_rowIterator_seekRow(&mut self.it, min_row) { | ||
| GrB_Info::GxB_EXHAUSTED => self.depleted = true, | ||
| GrB_Info::GrB_NO_VALUE => { | ||
| let mut info = GrB_Info::GrB_NO_VALUE; | ||
| while info == GrB_Info::GrB_NO_VALUE | ||
| && GxB_rowIterator_getRowIndex(&mut self.it) < max_row | ||
| { | ||
| info = GxB_rowIterator_nextRow(&mut self.it); | ||
| } | ||
|
|
||
| self.depleted = info != GrB_Info::GrB_SUCCESS | ||
| || GxB_rowIterator_getRowIndex(&mut self.it) > max_row; | ||
| } | ||
| GrB_Info::GrB_SUCCESS => { | ||
| self.depleted = GxB_rowIterator_getRowIndex(&mut self.it) > max_row; | ||
| } | ||
| _ => { | ||
| debug_assert!(false, "GxB_rowIterator_seekRow failed"); | ||
| } | ||
| } | ||
| } |
There was a problem hiding this comment.
Ensure robust error handling by replacing debug_assert! with a proper error response mechanism.
- debug_assert!(false, "GxB_rowIterator_seekRow failed");
+ return Err("GxB_rowIterator_seekRow failed");Committable suggestion was skipped due to low confidence.
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Actionable comments posted: 0
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Files selected for processing (1)
- src/graph/matrix/delta_matrix_iter.rs (1 hunks)
Files skipped from review as they are similar to previous changes (1)
- src/graph/matrix/delta_matrix_iter.rs
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Actionable comments posted: 3
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Files selected for processing (1)
- src/graph/matrix/delta_matrix.rs (1 hunks)
Additional comments not posted (1)
src/graph/matrix/delta_matrix.rs (1)
72-113: Ensure thread safety duringDeltaMatrixinitialization.The
newmethod initializes multipleSparseMatrixinstances and potentially a transposedDeltaMatrix. Ensure that the initialization process, especially the handling of themutex, is thread-safe. Consider initializing the mutex earlier or ensuring that its use in potentially concurrent sections is adequately protected.
| /// Sets the element of this [`DeltaMatrix`]. | ||
| pub fn set_element_bool( | ||
| &mut self, | ||
| i: u64, | ||
| j: u64, | ||
| ) { | ||
| if let Some(t) = self.transposed.as_mut() { | ||
| t.set_element_bool(j, i); | ||
| } | ||
|
|
||
| // if the value marked as deleted in dm remove it | ||
| // otherwise if it is not presented in m set it in dp | ||
| if self.delta_minus.extract_element_bool(i, j).is_some() { | ||
| self.delta_minus.remove_element(i, j); | ||
| self.set_dirty(true); | ||
| } else if self.matrix.extract_element_bool(i, j).is_none() { | ||
| self.delta_plus.set_element_bool(true, i, j); | ||
| self.set_dirty(true); | ||
| } | ||
| } |
There was a problem hiding this comment.
Review and optimize element setting and removal logic in DeltaMatrix.
The methods set_element_bool and set_element_u64 involve complex conditional logic and direct manipulation of matrix states. Ensure that these methods handle all edge cases correctly, especially under concurrent modifications. Consider refactoring to simplify the logic and improve readability.
- if self.delta_minus.extract_element_bool(i, j).is_some() {
- self.delta_minus.remove_element(i, j);
- self.set_dirty(true);
- } else if self.matrix.extract_element_bool(i, j).is_none() {
- self.delta_plus.set_element_bool(true, i, j);
- self.set_dirty(true);
- }
+ self.manage_element_state(i, j);Also applies to: 215-237
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Actionable comments posted: 26
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Files selected for processing (2)
- src/graph/matrix/delta_matrix.rs (1 hunks)
- src/graph/matrix/ffi.rs (1 hunks)
Additional comments not posted (2)
src/graph/matrix/ffi.rs (2)
17-26: Ensure proper error handling inDelta_Matrix_new.The function assumes the successful creation of a
DeltaMatrixinstance without checking for potential failures such as memory allocation issues. Consider adding error handling to manage such cases effectively.- *a = Box::into_raw(Box::new(DeltaMatrix::new(ty, nrows, ncols, transpose))); - GrB_Info::GrB_SUCCESS + let matrix = DeltaMatrix::new(ty, nrows, ncols, transpose); + if let Some(matrix) = matrix { + *a = Box::into_raw(Box::new(matrix)); + GrB_Info::GrB_SUCCESS + } else { + GrB_Info::GrB_OUT_OF_MEMORY + }Likely invalid or redundant comment.
29-34: Add null pointer checks inDelta_Matrix_getTranspose.This function returns a null pointer when the transpose operation fails, which is good. However, ensure that the calling code checks for null pointers to avoid potential dereferencing issues.
| /// Remove element from this [`DeltaMatrix`]. | ||
| pub fn remove_element( | ||
| &mut self, | ||
| i: u64, | ||
| j: u64, | ||
| ) { | ||
| if let Some(t) = self.transposed.as_mut() { | ||
| t.remove_element(j, i); | ||
| } | ||
|
|
||
| // if the value presented in m set dm otherwise remove from dp | ||
| if self.matrix.extract_element_bool(i, j).is_some() { | ||
| self.delta_minus.set_element_bool(true, i, j); | ||
| } else { | ||
| self.delta_plus.remove_element(i, j); | ||
| } | ||
| self.set_dirty(true); | ||
| } |
There was a problem hiding this comment.
Review and optimize element setting and removal logic in DeltaMatrix.
The methods set_element_bool, set_element_u64, and remove_element involve complex conditional logic and direct manipulation of matrix states. Ensure that these methods handle all edge cases correctly, especially under concurrent modifications. Consider refactoring to simplify the logic and improve readability. Additionally, the current implementation may benefit from using pattern matching to clarify conditions and actions.
- if self.delta_minus.extract_element_bool(i, j).is_some() {
- self.delta_minus.remove_element(i, j);
- self.set_dirty(true);
- } else if self.matrix.extract_element_bool(i, j).is_none() {
- self.delta_plus.set_element_bool(true, i, j);
- self.set_dirty(true);
- }
+ self.manage_element_state(i, j);Also applies to: 193-212, 215-237
| /// if force_sync is true apply dp and dm on m | ||
| /// otherwise just apply pending on the m, dp, dm | ||
| pub fn wait( | ||
| &mut self, | ||
| force_sync: bool, | ||
| ) { | ||
| if let Some(t) = self.transposed.as_mut() { | ||
| t.wait(force_sync); | ||
| } | ||
|
|
||
| let mut delta_max_pending_changes = MaybeUninit::uninit(); | ||
| unsafe { | ||
| Config_Option_get( | ||
| ConfigOptionField::DELTA_MAX_PENDING_CHANGES, | ||
| delta_max_pending_changes.as_mut_ptr(), | ||
| ) | ||
| }; | ||
| let delta_max_pending_changes = unsafe { delta_max_pending_changes.assume_init() }; | ||
|
|
||
| self.sync(force_sync, delta_max_pending_changes); | ||
| self.set_dirty(false); | ||
| } | ||
|
|
||
| fn sync( | ||
| &mut self, | ||
| force_sync: bool, | ||
| delta_max_pending_changes: u64, | ||
| ) { | ||
| if force_sync { | ||
| self.sync_deletions(); | ||
| self.sync_additions(); | ||
| } else { | ||
| if self.delta_minus.nvals() > delta_max_pending_changes { | ||
| self.sync_deletions(); | ||
| } | ||
|
|
||
| if self.delta_plus.nvals() > delta_max_pending_changes { | ||
| self.sync_additions(); | ||
| } | ||
| } | ||
|
|
||
| self.matrix.wait(); | ||
| self.delta_plus.wait(); | ||
| self.delta_minus.wait(); | ||
| } |
There was a problem hiding this comment.
Enhance synchronization logic in DeltaMatrix.
The methods wait and sync are critical for ensuring the consistency of matrix states. Review these methods to ensure they handle all synchronization scenarios correctly, especially considering the potential for race conditions. Adding detailed logging at critical steps could help in debugging and maintaining these methods.
+ import log; // Ensure logging is available
fn sync(&mut self, force_sync: bool, delta_max_pending_changes: u64) {
+ log::debug("Starting sync with force_sync: {}", force_sync);
if force_sync {
self.sync_deletions();
self.sync_additions();
} else {
if self.delta_minus.nvals() > delta_max_pending_changes {
self.sync_deletions();
}
if self.delta_plus.nvals() > delta_max_pending_changes {
self.sync_additions();
}
}
+ log::debug("Sync completed.");
}Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| /// if force_sync is true apply dp and dm on m | |
| /// otherwise just apply pending on the m, dp, dm | |
| pub fn wait( | |
| &mut self, | |
| force_sync: bool, | |
| ) { | |
| if let Some(t) = self.transposed.as_mut() { | |
| t.wait(force_sync); | |
| } | |
| let mut delta_max_pending_changes = MaybeUninit::uninit(); | |
| unsafe { | |
| Config_Option_get( | |
| ConfigOptionField::DELTA_MAX_PENDING_CHANGES, | |
| delta_max_pending_changes.as_mut_ptr(), | |
| ) | |
| }; | |
| let delta_max_pending_changes = unsafe { delta_max_pending_changes.assume_init() }; | |
| self.sync(force_sync, delta_max_pending_changes); | |
| self.set_dirty(false); | |
| } | |
| fn sync( | |
| &mut self, | |
| force_sync: bool, | |
| delta_max_pending_changes: u64, | |
| ) { | |
| if force_sync { | |
| self.sync_deletions(); | |
| self.sync_additions(); | |
| } else { | |
| if self.delta_minus.nvals() > delta_max_pending_changes { | |
| self.sync_deletions(); | |
| } | |
| if self.delta_plus.nvals() > delta_max_pending_changes { | |
| self.sync_additions(); | |
| } | |
| } | |
| self.matrix.wait(); | |
| self.delta_plus.wait(); | |
| self.delta_minus.wait(); | |
| } | |
| /// if force_sync is true apply dp and dm on m | |
| /// otherwise just apply pending on the m, dp, dm | |
| pub fn wait( | |
| &mut self, | |
| force_sync: bool, | |
| ) { | |
| if let Some(t) = self.transposed.as_mut() { | |
| t.wait(force_sync); | |
| } | |
| let mut delta_max_pending_changes = MaybeUninit::uninit(); | |
| unsafe { | |
| Config_Option_get( | |
| ConfigOptionField::DELTA_MAX_PENDING_CHANGES, | |
| delta_max_pending_changes.as_mut_ptr(), | |
| ) | |
| }; | |
| let delta_max_pending_changes = unsafe { delta_max_pending_changes.assume_init() }; | |
| self.sync(force_sync, delta_max_pending_changes); | |
| self.set_dirty(false); | |
| } | |
| fn sync( | |
| &mut self, | |
| force_sync: bool, | |
| delta_max_pending_changes: u64, | |
| ) { | |
| log::debug("Starting sync with force_sync: {}", force_sync); | |
| if force_sync { | |
| self.sync_deletions(); | |
| self.sync_additions(); | |
| } else { | |
| if self.delta_minus.nvals() > delta_max_pending_changes { | |
| self.sync_deletions(); | |
| } | |
| if self.delta_plus.nvals() > delta_max_pending_changes { | |
| self.sync_additions(); | |
| } | |
| } | |
| log::debug("Sync completed."); | |
| self.matrix.wait(); | |
| self.delta_plus.wait(); | |
| self.delta_minus.wait(); | |
| } |
| #[no_mangle] | ||
| unsafe extern "C" fn Delta_MatrixTupleIter_attach( | ||
| iter: _MatrixTupleIter, | ||
| a: _Matrix, | ||
| ) -> GrB_Info { | ||
| (*iter).attach(&*a); | ||
| GrB_Info::GrB_SUCCESS |
There was a problem hiding this comment.
Implement error handling in Delta_MatrixTupleIter_attach.
This function attaches an iterator to a matrix and assumes success. Add error handling to manage potential failures in the attach() method.
- (*iter).attach(&*a);
- GrB_Info::GrB_SUCCESS
+ if (*iter).attach(&*a).is_ok() {
+ GrB_Info::GrB_SUCCESS
+ } else {
+ GrB_Info::GrB_ERROR
+ }Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| #[no_mangle] | |
| unsafe extern "C" fn Delta_MatrixTupleIter_attach( | |
| iter: _MatrixTupleIter, | |
| a: _Matrix, | |
| ) -> GrB_Info { | |
| (*iter).attach(&*a); | |
| GrB_Info::GrB_SUCCESS | |
| #[no_mangle] | |
| unsafe extern "C" fn Delta_MatrixTupleIter_attach( | |
| iter: _MatrixTupleIter, | |
| a: _Matrix, | |
| ) -> GrB_Info { | |
| if (*iter).attach(&*a).is_ok() { | |
| GrB_Info::GrB_SUCCESS | |
| } else { | |
| GrB_Info::GrB_ERROR | |
| } |
| #[no_mangle] | ||
| unsafe extern "C" fn Delta_Matrix_wait( | ||
| c: _Matrix, | ||
| force_sync: bool, | ||
| ) -> GrB_Info { | ||
| (*c).wait(force_sync); | ||
| GrB_Info::GrB_SUCCESS |
There was a problem hiding this comment.
Implement error handling in Delta_Matrix_wait.
The function waits for pending operations to complete and assumes success. Add error handling to manage potential failures in the wait() method.
- (*c).wait(force_sync);
- GrB_Info::GrB_SUCCESS
+ if (*c).wait(force_sync).is_ok() {
+ GrB_Info::GrB_SUCCESS
+ } else {
+ GrB_Info::GrB_ERROR
+ }Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| #[no_mangle] | |
| unsafe extern "C" fn Delta_Matrix_wait( | |
| c: _Matrix, | |
| force_sync: bool, | |
| ) -> GrB_Info { | |
| (*c).wait(force_sync); | |
| GrB_Info::GrB_SUCCESS | |
| #[no_mangle] | |
| unsafe extern "C" fn Delta_Matrix_wait( | |
| c: _Matrix, | |
| force_sync: bool, | |
| ) -> GrB_Info { | |
| if (*c).wait(force_sync).is_ok() { | |
| GrB_Info::GrB_SUCCESS | |
| } else { | |
| GrB_Info::GrB_ERROR | |
| } |
| #[no_mangle] | ||
| unsafe extern "C" fn Delta_Matrix_resize( | ||
| c: _Matrix, | ||
| nrows_new: GrB_Index, | ||
| ncols_new: GrB_Index, | ||
| ) -> GrB_Info { | ||
| (*c).resize(nrows_new, ncols_new); | ||
| GrB_Info::GrB_SUCCESS |
There was a problem hiding this comment.
Add error handling to Delta_Matrix_resize.
The function performs a resize operation without checking for errors. Introduce error handling to manage failures in the resize operation effectively.
- (*c).resize(nrows_new, ncols_new);
- GrB_Info::GrB_SUCCESS
+ if (*c).resize(nrows_new, ncols_new).is_ok() {
+ GrB_Info::GrB_SUCCESS
+ } else {
+ GrB_Info::GrB_ERROR
+ }Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| #[no_mangle] | |
| unsafe extern "C" fn Delta_Matrix_resize( | |
| c: _Matrix, | |
| nrows_new: GrB_Index, | |
| ncols_new: GrB_Index, | |
| ) -> GrB_Info { | |
| (*c).resize(nrows_new, ncols_new); | |
| GrB_Info::GrB_SUCCESS | |
| #[no_mangle] | |
| unsafe extern "C" fn Delta_Matrix_resize( | |
| c: _Matrix, | |
| nrows_new: GrB_Index, | |
| ncols_new: GrB_Index, | |
| ) -> GrB_Info { | |
| if (*c).resize(nrows_new, ncols_new).is_ok() { | |
| GrB_Info::GrB_SUCCESS | |
| } else { | |
| GrB_Info::GrB_ERROR | |
| } |
| #[no_mangle] | ||
| unsafe extern "C" fn Delta_Matrix_clear(c: _Matrix) -> GrB_Info { | ||
| (*c).clear(); | ||
| GrB_Info::GrB_SUCCESS |
There was a problem hiding this comment.
Implement error handling in Delta_Matrix_clear.
The function clears the matrix and assumes success. Add error handling to manage potential failures in the clear() method.
- (*c).clear();
- GrB_Info::GrB_SUCCESS
+ if (*c).clear().is_ok() {
+ GrB_Info::GrB_SUCCESS
+ } else {
+ GrB_Info::GrB_ERROR
+ }Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| #[no_mangle] | |
| unsafe extern "C" fn Delta_Matrix_clear(c: _Matrix) -> GrB_Info { | |
| (*c).clear(); | |
| GrB_Info::GrB_SUCCESS | |
| #[no_mangle] | |
| unsafe extern "C" fn Delta_Matrix_clear(c: _Matrix) -> GrB_Info { | |
| if (*c).clear().is_ok() { | |
| GrB_Info::GrB_SUCCESS | |
| } else { | |
| GrB_Info::GrB_ERROR | |
| } |
| #[no_mangle] | ||
| unsafe extern "C" fn Delta_Matrix_export( | ||
| a: *mut GrB_Matrix, | ||
| c: _Matrix, | ||
| ) -> GrB_Info { | ||
| *a = (&*c).export().grb_matrix(); | ||
| GrB_Info::GrB_SUCCESS | ||
| } |
There was a problem hiding this comment.
Implement error handling in Delta_Matrix_export.
The function exports a matrix and assumes success. Add error handling to manage potential failures in the export().grb_matrix() method.
- *a = (&*c).export().grb_matrix();
- GrB_Info::GrB_SUCCESS
+ let exported = (&*c).export().grb_matrix();
+ if let Some(matrix) = exported {
+ *a = matrix;
+ GrB_Info::GrB_SUCCESS
+ } else {
+ GrB_Info::GrB_ERROR
+ }Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| #[no_mangle] | |
| unsafe extern "C" fn Delta_Matrix_export( | |
| a: *mut GrB_Matrix, | |
| c: _Matrix, | |
| ) -> GrB_Info { | |
| *a = (&*c).export().grb_matrix(); | |
| GrB_Info::GrB_SUCCESS | |
| } | |
| #[no_mangle] | |
| unsafe extern "C" fn Delta_Matrix_export( | |
| a: *mut GrB_Matrix, | |
| c: _Matrix, | |
| ) -> GrB_Info { | |
| let exported = (&*c).export().grb_matrix(); | |
| if let Some(matrix) = exported { | |
| *a = matrix; | |
| GrB_Info::GrB_SUCCESS | |
| } else { | |
| GrB_Info::GrB_ERROR | |
| } | |
| } |
| #[no_mangle] | ||
| unsafe extern "C" fn Delta_Matrix_extractElement_UINT64( | ||
| x: *mut u64, | ||
| c: _Matrix, | ||
| i: GrB_Index, | ||
| j: GrB_Index, | ||
| ) -> GrB_Info { | ||
| if let Some(v) = (&*c).extract_element_u64(i, j) { | ||
| if !x.is_null() { | ||
| *x = v; | ||
| } | ||
| GrB_Info::GrB_SUCCESS | ||
| } else { | ||
| GrB_Info::GrB_NO_VALUE | ||
| } |
There was a problem hiding this comment.
Add null checks and error handling to Delta_Matrix_extractElement_UINT64.
Similar to the boolean extraction function, this function needs comprehensive error handling to manage null pointers and failures in the extract_element_u64() method.
- if let Some(v) = (&*c).extract_element_u64(i, j) {
- if !x.is_null() {
- *x = v;
- }
- GrB_Info::GrB_SUCCESS
- } else {
- GrB_Info::GrB_NO_VALUE
- }
+ if !x.is_null() {
+ if let Some(v) = (&*c).extract_element_u64(i, j) {
+ *x = v;
+ GrB_Info::GrB_SUCCESS
+ } else {
+ GrB_Info::GrB_NO_VALUE
+ }
+ } else {
+ GrB_Info::GrB_NULL_POINTER
+ }Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| #[no_mangle] | |
| unsafe extern "C" fn Delta_Matrix_extractElement_UINT64( | |
| x: *mut u64, | |
| c: _Matrix, | |
| i: GrB_Index, | |
| j: GrB_Index, | |
| ) -> GrB_Info { | |
| if let Some(v) = (&*c).extract_element_u64(i, j) { | |
| if !x.is_null() { | |
| *x = v; | |
| } | |
| GrB_Info::GrB_SUCCESS | |
| } else { | |
| GrB_Info::GrB_NO_VALUE | |
| } | |
| #[no_mangle] | |
| unsafe extern "C" fn Delta_Matrix_extractElement_UINT64( | |
| x: *mut u64, | |
| c: _Matrix, | |
| i: GrB_Index, | |
| j: GrB_Index, | |
| ) -> GrB_Info { | |
| if !x.is_null() { | |
| if let Some(v) = (&*c).extract_element_u64(i, j) { | |
| *x = v; | |
| GrB_Info::GrB_SUCCESS | |
| } else { | |
| GrB_Info::GrB_NO_VALUE | |
| } | |
| } else { | |
| GrB_Info::GrB_NULL_POINTER | |
| } | |
| } |
| #[no_mangle] | ||
| unsafe extern "C" fn Delta_Matrix_synchronize( | ||
| c: _Matrix, | ||
| nrows: GrB_Index, | ||
| ncols: GrB_Index, | ||
| ) { | ||
| (*c).synchronize(nrows, ncols); |
There was a problem hiding this comment.
Implement error handling in Delta_Matrix_synchronize.
This function synchronizes the matrix and assumes success. Add error handling to manage potential failures in the synchronize() method.
- (*c).synchronize(nrows, ncols);
+ if (*c).synchronize(nrows, ncols).is_ok() {
+ GrB_Info::GrB_SUCCESS
+ } else {
+ GrB_Info::GrB_ERROR
+ }Committable suggestion was skipped due to low confidence.
| #[no_mangle] | ||
| unsafe extern "C" fn Delta_Matrix_nvals( | ||
| nvals: *mut GrB_Index, | ||
| c: _Matrix, | ||
| ) -> GrB_Info { | ||
| *nvals = (&*c).nvals(); | ||
| GrB_Info::GrB_SUCCESS |
There was a problem hiding this comment.
Implement error handling in Delta_Matrix_nvals.
This function directly assigns the number of values and assumes success. Introduce error checks to handle potential issues gracefully.
- *nvals = (&*c).nvals();
- GrB_Info::GrB_SUCCESS
+ let values = (&*c).nvals();
+ if let Some(values) = values {
+ *nvals = values;
+ GrB_Info::GrB_SUCCESS
+ } else {
+ GrB_Info::GrB_ERROR
+ }Committable suggestion was skipped due to low confidence.
There was a problem hiding this comment.
Actionable comments posted: 12
Review details
Configuration used: CodeRabbit UI
Review profile: CHILL
Files selected for processing (1)
- src/graph/matrix/delta_matrix.rs (1 hunks)
Additional comments not posted (6)
src/graph/matrix/delta_matrix.rs (6)
113-116: LGTM!
118-125: LGTM!
128-141: LGTM!
143-155: LGTM!
172-189: Review logic for removing elements inremove_element.The
remove_elementmethod contains complex logic for updating the delta matrices based on the presence of elements. This method should be carefully reviewed to ensure it handles all edge cases correctly, particularly in scenarios where elements are concurrently modified.Verification successful
The
remove_elementmethod is adequately tested.The
remove_elementmethod is invoked multiple times within the test module, ensuring that its functionality is covered by tests.
src/graph/matrix/delta_matrix.rs: Multiple invocations ofremove_element.src/graph/matrix/delta_matrix_iter.rs: Invocation ofremove_element.Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify the logic for removing elements in `remove_element`. # Test: Search for tests covering the `remove_element` method. Expect: Tests that cover various scenarios including edge cases. rg --type rust 'remove_element' --files-with-matches | xargs rg 'test'Length of output: 2497
Script:
#!/bin/bash # Description: Check if the `remove_element` method is invoked within the test module. # Search for the `remove_element` method invocation in the test module. rg --type rust 'remove_element' --files-with-matches | xargs rg 'remove_element'Length of output: 1563
70-111: Verify initialization of thetransposedfield.Ensure that the
transposedfield is properly tested whentransposeistrue.Verification successful
Verify
test_transposefunction fortransposedfield initialization.Ensure that the
test_transposefunction insrc/graph/matrix/delta_matrix.rsverifies the initialization of thetransposedfield in theDeltaMatrix::newmethod.
Initialization of the
transposedfield is properly tested.The
test_transposefunction insrc/graph/matrix/delta_matrix.rsverifies the initialization of thetransposedfield in theDeltaMatrix::newmethod.
src/graph/matrix/delta_matrix.rs:test_transposefunctionScripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify tests for the initialization of `transposed` in `DeltaMatrix::new`. # Test: Search for tests covering the initialization logic of `transposed`. Expect: Tests that cover various scenarios including edge cases. rg --type rust 'DeltaMatrix::new' --files-with-matches | xargs rg 'test'Length of output: 2499
Script:
#!/bin/bash # Description: Inspect the `test_transpose` function to confirm it tests the initialization of the `transposed` field in `DeltaMatrix::new`. # Extract and print the `test_transpose` function. rg --type rust 'fn test_transpose' -A 20 src/graph/matrix/delta_matrix.rsLength of output: 649
| /// Resize the [`DeltaMatrix`]. | ||
| pub fn resize( | ||
| &mut self, | ||
| nrows_new: u64, | ||
| ncols_new: u64, | ||
| ) { | ||
| if let Some(t) = self.transposed.as_mut() { | ||
| t.resize(ncols_new, nrows_new); | ||
| } | ||
| self.matrix.resize(nrows_new, ncols_new); | ||
| self.delta_plus.resize(nrows_new, ncols_new); | ||
| self.delta_minus.resize(nrows_new, ncols_new); | ||
| } |
There was a problem hiding this comment.
Add more tests for resizing transposed matrices.
Consider adding more tests for resizing transposed matrices to ensure all scenarios are covered.
Would you like me to help in writing these additional tests?
| /// Get the value at position of this [`DeltaMatrix`]. | ||
| pub fn extract_element_bool( | ||
| &self, | ||
| i: u64, | ||
| j: u64, | ||
| ) -> Option<bool> { | ||
| // if the value presented in dp return true | ||
| // if it is deleted in dm return no value | ||
| // otherwise return it from m | ||
| if self.delta_plus.extract_element_bool(i, j).is_some() { | ||
| Some(true) | ||
| } else if self.delta_minus.extract_element_bool(i, j).is_some() { | ||
| None | ||
| } else { | ||
| self.matrix.extract_element_bool(i, j) | ||
| } | ||
| } | ||
|
|
||
| /// Get the value at position of this [`DeltaMatrix`]. | ||
| pub fn extract_element_u64( | ||
| &self, | ||
| i: u64, | ||
| j: u64, | ||
| ) -> Option<u64> { | ||
| // if the value presented in dp return true | ||
| // if it is deleted in dm return no value | ||
| // otherwise return it from m | ||
| if let Some(v) = self.delta_plus.extract_element_u64(i, j) { | ||
| Some(v) | ||
| } else if self.delta_minus.extract_element_bool(i, j).is_some() { | ||
| None | ||
| } else { | ||
| self.matrix.extract_element_u64(i, j) | ||
| } | ||
| } |
There was a problem hiding this comment.
Enhance test coverage for extract_element_bool and extract_element_u64.
The extract_element_bool and extract_element_u64 methods are implemented with robust logic handling various matrix states. Enhance test coverage to ensure all scenarios are covered.
Would you like help in expanding the test coverage for these methods?
| /// Remove all presented elements from this [`DeltaMatrix`]. | ||
| pub fn remove_elements( | ||
| &mut self, | ||
| mask: &SparseMatrix, | ||
| ) { | ||
| debug_assert!(self.transposed.is_none()); | ||
|
|
||
| unsafe { | ||
| let mut s = MaybeUninit::uninit(); | ||
| GrB_Scalar_new(s.as_mut_ptr(), GrB_BOOL); | ||
| // delete all presented elements in dp | ||
| self.delta_plus.assign_scalar( | ||
| mask, | ||
| s.assume_init(), | ||
| GrB_ALL, | ||
| self.nrows(), | ||
| GrB_ALL, | ||
| self.ncols(), | ||
| GrB_DESC_S, | ||
| ); | ||
| // delete elements presented in m by marking them as deleted in dm | ||
| self.delta_minus.assign( | ||
| mask, | ||
| &self.matrix, | ||
| GrB_ALL, | ||
| self.nrows(), | ||
| GrB_ALL, | ||
| self.ncols(), | ||
| GrB_DESC_S, | ||
| ); | ||
| self.set_dirty(true); | ||
| GrB_Scalar_free(s.as_mut_ptr()); | ||
| } | ||
| } | ||
|
|
||
| /// Clear this [`DeltaMatrix`]. | ||
| pub fn clear(&mut self) { | ||
| debug_assert!(self.transposed.is_none()); | ||
|
|
||
| self.matrix.clear(); | ||
| self.delta_plus.clear(); | ||
| self.delta_minus.clear(); | ||
| self.set_dirty(true); | ||
| } | ||
|
|
||
| /// Copy this [`DeltaMatrix`]. | ||
| pub fn copy( | ||
| &mut self, | ||
| a: &DeltaMatrix, | ||
| ) { | ||
| debug_assert!(self.transposed.is_none()); | ||
|
|
||
| self.matrix.copy(&a.matrix); | ||
| self.delta_plus.copy(&a.delta_plus); | ||
| self.delta_minus.copy(&a.delta_minus); | ||
| } |
There was a problem hiding this comment.
Ensure comprehensive test coverage for remove_elements, clear, and copy.
The remove_elements, clear, and copy methods manipulate the matrix and its deltas based on the provided mask or source matrix. Ensure comprehensive test coverage for these methods to verify their correctness.
Would you like assistance in creating additional tests for these methods?
| /// Multiply m by n and the result is in this [`DeltaMatrix`]. | ||
| pub fn mxm( | ||
| &mut self, | ||
| semiring: GrB_Semiring, | ||
| m: &DeltaMatrix, | ||
| n: &DeltaMatrix, | ||
| ) { | ||
| unsafe { | ||
| let (mask, desc) = if n.delta_minus.nvals() > 0 { | ||
| let mut mask = SparseMatrix::new(GrB_BOOL, self.nrows(), self.ncols()); | ||
| mask.mxm( | ||
| None, | ||
| &m.matrix, | ||
| &n.delta_minus, | ||
| GxB_ANY_PAIR_BOOL, | ||
| null_mut(), | ||
| ); | ||
| if mask.nvals() > 0 { | ||
| (Some(mask), GrB_DESC_RSC) | ||
| } else { | ||
| (None, null_mut()) | ||
| } | ||
| } else { | ||
| (None, null_mut()) | ||
| }; | ||
|
|
||
| let accum = if n.delta_plus.nvals() > 0 { | ||
| let mut accum = SparseMatrix::new(GrB_BOOL, self.nrows(), self.ncols()); | ||
| accum.mxm(None, &m.matrix, &n.delta_plus, semiring, null_mut()); | ||
| if accum.nvals() > 0 { | ||
| Some(accum) | ||
| } else { | ||
| None | ||
| } | ||
| } else { | ||
| None | ||
| }; | ||
|
|
||
| self.matrix | ||
| .mxm(mask.as_ref(), &m.matrix, &n.matrix, semiring, desc); | ||
| if let Some(accum) = accum { | ||
| self.matrix | ||
| .element_wise_add(None, None, Some(&accum), GxB_ANY_PAIR_BOOL); | ||
| } | ||
| } | ||
| } |
There was a problem hiding this comment.
Add test cases for the mxm method.
The mxm method performs matrix multiplication considering delta matrices. This method involves multiple conditional branches and matrix operations, which are complex and error-prone. Review this method to ensure it handles all edge cases and performs optimally.
Would you like me to help in writing these additional tests?
| /// Elementwise add m and n the result is in this [`DeltaMatrix`]. | ||
| pub fn element_wise_add( | ||
| &mut self, | ||
| semiring: GrB_Semiring, | ||
| m: &DeltaMatrix, | ||
| n: &DeltaMatrix, | ||
| ) { | ||
| match ( | ||
| m.delta_minus.nvals() > 0 || m.delta_plus.nvals() > 0, | ||
| n.delta_minus.nvals() > 0 || n.delta_plus.nvals() > 0, | ||
| ) { | ||
| (true, true) => { | ||
| self.matrix | ||
| .element_wise_add(None, Some(&m.export()), Some(&n.export()), semiring); | ||
| } | ||
| (true, false) => { | ||
| self.matrix | ||
| .element_wise_add(None, Some(&m.export()), Some(&n.matrix), semiring); | ||
| } | ||
| (false, true) => { | ||
| self.matrix | ||
| .element_wise_add(None, Some(&m.matrix), Some(&n.export()), semiring); | ||
| } | ||
| (false, false) => { | ||
| self.matrix | ||
| .element_wise_add(None, Some(&m.matrix), Some(&n.matrix), semiring); | ||
| } | ||
| } | ||
| } |
There was a problem hiding this comment.
Add tests for the element_wise_add method.
The element_wise_add method does not appear to have direct or indirect test coverage. It is crucial to add comprehensive tests to ensure its functionality is thoroughly verified.
Would you like me to help in writing these additional tests?
| fn sync_deletions(&mut self) { | ||
| self.matrix | ||
| .transpose(Some(&self.delta_minus), null_mut(), None, unsafe { | ||
| GrB_DESC_RSCT0 | ||
| }); | ||
| self.delta_minus.clear(); | ||
| } | ||
|
|
||
| fn sync_additions(&mut self) { | ||
| unsafe { | ||
| self.matrix.assign( | ||
| &self.delta_plus, | ||
| &self.delta_plus, | ||
| GrB_ALL, | ||
| self.nrows(), | ||
| GrB_ALL, | ||
| self.ncols(), | ||
| GrB_DESC_S, | ||
| ); | ||
| } | ||
| self.delta_plus.clear(); | ||
| } |
There was a problem hiding this comment.
Ensure comprehensive test coverage for sync_deletions and sync_additions.
The methods sync_deletions and sync_additions handle specific synchronization tasks. Ensure comprehensive test coverage for these methods to verify their correctness.
Would you like assistance in creating these tests?
| /// Check if need to resize or to apply pending changes on this [`DeltaMatrix`]. | ||
| pub fn synchronize( | ||
| &mut self, | ||
| nrows: u64, | ||
| ncols: u64, | ||
| ) { | ||
| if !(self.nrows() < nrows || self.ncols() < ncols || self.dirty) { | ||
| return; | ||
| } | ||
|
|
||
| self.mutex.as_mut().unwrap().lock(); | ||
|
|
||
| if self.nrows() < nrows || self.ncols() < ncols { | ||
| self.resize(nrows, ncols); | ||
| } | ||
|
|
||
| if self.dirty { | ||
| self.wait(false); | ||
| } | ||
|
|
||
| self.mutex.as_mut().unwrap().unlock(); | ||
| } |
There was a problem hiding this comment.
Ensure comprehensive test coverage for the synchronize method.
The synchronize method checks if resizing or synchronization is needed and performs the necessary actions. Ensure comprehensive test coverage for this method to verify its correctness.
Would you like assistance in creating these tests?
| struct CMutex { | ||
| mutex: pthread_mutex_t, | ||
| } | ||
|
|
||
| impl CMutex { | ||
| fn new() -> Self { | ||
| unsafe { | ||
| let mut mutex = MaybeUninit::uninit(); | ||
| libc::pthread_mutex_init(mutex.as_mut_ptr(), null_mut()); | ||
| Self { | ||
| mutex: mutex.assume_init(), | ||
| } | ||
| } | ||
| } | ||
|
|
||
| fn lock(&mut self) { | ||
| unsafe { | ||
| libc::pthread_mutex_lock(&mut self.mutex); | ||
| } | ||
| } | ||
|
|
||
| fn unlock(&mut self) { | ||
| unsafe { | ||
| libc::pthread_mutex_unlock(&mut self.mutex); | ||
| } | ||
| } | ||
| } | ||
|
|
||
| impl Drop for CMutex { | ||
| fn drop(&mut self) { | ||
| unsafe { libc::pthread_mutex_destroy(&mut self.mutex) }; | ||
| } | ||
| } |
There was a problem hiding this comment.
Consider using Rust's native synchronization primitives instead of pthread_mutex_t.
The use of pthread_mutex_t in Rust code is unusual and bypasses the safety guarantees provided by Rust's type system. It's recommended to use std::sync::Mutex for better safety and integration with Rust's ownership model unless there is a specific requirement to interface directly with C code. This would also simplify the code by removing unsafe blocks and manual lock management.
- struct CMutex {
- mutex: pthread_mutex_t,
- }
-
- impl CMutex {
- fn new() -> Self {
- unsafe {
- let mut mutex = MaybeUninit::uninit();
- libc::pthread_mutex_init(mutex.as_mut_ptr(), null_mut());
- Self {
- mutex: mutex.assume_init(),
- }
- }
- }
- fn lock(&mut self) {
- unsafe {
- libc::pthread_mutex_lock(&mut self.mutex);
- }
- }
- fn unlock(&mut self) {
- unsafe {
- libc::pthread_mutex_unlock(&mut self.mutex);
- }
- }
- }
-
- impl Drop for CMutex {
- fn drop(&mut self) {
- unsafe { libc::pthread_mutex_destroy(&mut self.mutex) };
- }
- }
+ use std::sync::Mutex;
+
+ struct CMutex {
+ mutex: Mutex<()>,
+ }
+
+ impl CMutex {
+ fn new() -> Self {
+ Self { mutex: Mutex::new(()) }
+ }
+
+ fn lock(&self) {
+ self.mutex.lock().unwrap();
+ }
+
+ fn unlock(&self) {
+ drop(self.mutex.lock().unwrap());
+ }
+ }Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| struct CMutex { | |
| mutex: pthread_mutex_t, | |
| } | |
| impl CMutex { | |
| fn new() -> Self { | |
| unsafe { | |
| let mut mutex = MaybeUninit::uninit(); | |
| libc::pthread_mutex_init(mutex.as_mut_ptr(), null_mut()); | |
| Self { | |
| mutex: mutex.assume_init(), | |
| } | |
| } | |
| } | |
| fn lock(&mut self) { | |
| unsafe { | |
| libc::pthread_mutex_lock(&mut self.mutex); | |
| } | |
| } | |
| fn unlock(&mut self) { | |
| unsafe { | |
| libc::pthread_mutex_unlock(&mut self.mutex); | |
| } | |
| } | |
| } | |
| impl Drop for CMutex { | |
| fn drop(&mut self) { | |
| unsafe { libc::pthread_mutex_destroy(&mut self.mutex) }; | |
| } | |
| } | |
| use std::sync::Mutex; | |
| struct CMutex { | |
| mutex: Mutex<()>, | |
| } | |
| impl CMutex { | |
| fn new() -> Self { | |
| Self { mutex: Mutex::new(()) } | |
| } | |
| fn lock(&self) { | |
| self.mutex.lock().unwrap(); | |
| } | |
| fn unlock(&self) { | |
| drop(self.mutex.lock().unwrap()); | |
| } | |
| } |
| /// Apply pending changes on this [`DeltaMatrix`]. | ||
| /// if force_sync is true apply dp and dm on m | ||
| /// otherwise just apply pending on the m, dp, dm | ||
| pub fn wait( | ||
| &mut self, | ||
| force_sync: bool, | ||
| ) { | ||
| if let Some(t) = self.transposed.as_mut() { | ||
| t.wait(force_sync); | ||
| } | ||
|
|
||
| let mut delta_max_pending_changes = MaybeUninit::uninit(); | ||
| unsafe { | ||
| Config_Option_get( | ||
| ConfigOptionField::DELTA_MAX_PENDING_CHANGES, | ||
| delta_max_pending_changes.as_mut_ptr(), | ||
| ) | ||
| }; | ||
| let delta_max_pending_changes = unsafe { delta_max_pending_changes.assume_init() }; | ||
|
|
||
| self.sync(force_sync, delta_max_pending_changes); | ||
| self.set_dirty(false); | ||
| } | ||
|
|
||
| fn sync( | ||
| &mut self, | ||
| force_sync: bool, | ||
| delta_max_pending_changes: u64, | ||
| ) { | ||
| if force_sync { | ||
| self.sync_deletions(); | ||
| self.sync_additions(); | ||
| } else { | ||
| if self.delta_minus.nvals() > delta_max_pending_changes { | ||
| self.sync_deletions(); | ||
| } | ||
|
|
||
| if self.delta_plus.nvals() > delta_max_pending_changes { | ||
| self.sync_additions(); | ||
| } | ||
| } | ||
|
|
||
| self.matrix.wait(); | ||
| self.delta_plus.wait(); | ||
| self.delta_minus.wait(); | ||
| } |
There was a problem hiding this comment.
Enhance synchronization logic in DeltaMatrix.
The methods wait and sync are critical for ensuring the consistency of matrix states. Review these methods to ensure they handle all synchronization scenarios correctly, especially considering the potential for race conditions. Adding detailed logging at critical steps could help in debugging and maintaining these methods.
+ import log; // Ensure logging is available
fn sync(&mut self, force_sync: bool, delta_max_pending_changes: u64) {
+ log::debug("Starting sync with force_sync: {}", force_sync);
if force_sync {
self.sync_deletions();
self.sync_additions();
} else {
if self.delta_minus.nvals() > delta_max_pending_changes {
self.sync_deletions();
}
if self.delta_plus.nvals() > delta_max_pending_changes {
self.sync_additions();
}
}
+ log::debug("Sync completed.");
}Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| /// Apply pending changes on this [`DeltaMatrix`]. | |
| /// if force_sync is true apply dp and dm on m | |
| /// otherwise just apply pending on the m, dp, dm | |
| pub fn wait( | |
| &mut self, | |
| force_sync: bool, | |
| ) { | |
| if let Some(t) = self.transposed.as_mut() { | |
| t.wait(force_sync); | |
| } | |
| let mut delta_max_pending_changes = MaybeUninit::uninit(); | |
| unsafe { | |
| Config_Option_get( | |
| ConfigOptionField::DELTA_MAX_PENDING_CHANGES, | |
| delta_max_pending_changes.as_mut_ptr(), | |
| ) | |
| }; | |
| let delta_max_pending_changes = unsafe { delta_max_pending_changes.assume_init() }; | |
| self.sync(force_sync, delta_max_pending_changes); | |
| self.set_dirty(false); | |
| } | |
| fn sync( | |
| &mut self, | |
| force_sync: bool, | |
| delta_max_pending_changes: u64, | |
| ) { | |
| if force_sync { | |
| self.sync_deletions(); | |
| self.sync_additions(); | |
| } else { | |
| if self.delta_minus.nvals() > delta_max_pending_changes { | |
| self.sync_deletions(); | |
| } | |
| if self.delta_plus.nvals() > delta_max_pending_changes { | |
| self.sync_additions(); | |
| } | |
| } | |
| self.matrix.wait(); | |
| self.delta_plus.wait(); | |
| self.delta_minus.wait(); | |
| } | |
| /// Apply pending changes on this [`DeltaMatrix`]. | |
| /// if force_sync is true apply dp and dm on m | |
| /// otherwise just apply pending on the m, dp, dm | |
| pub fn wait( | |
| &mut self, | |
| force_sync: bool, | |
| ) { | |
| if let Some(t) = self.transposed.as_mut() { | |
| t.wait(force_sync); | |
| } | |
| let mut delta_max_pending_changes = MaybeUninit::uninit(); | |
| unsafe { | |
| Config_Option_get( | |
| ConfigOptionField::DELTA_MAX_PENDING_CHANGES, | |
| delta_max_pending_changes.as_mut_ptr(), | |
| ) | |
| }; | |
| let delta_max_pending_changes = unsafe { delta_max_pending_changes.assume_init() }; | |
| self.sync(force_sync, delta_max_pending_changes); | |
| self.set_dirty(false); | |
| } | |
| + import log; // Ensure logging is available | |
| fn sync( | |
| &mut self, | |
| force_sync: bool, | |
| delta_max_pending_changes: u64, | |
| ) { | |
| + log::debug("Starting sync with force_sync: {}", force_sync); | |
| if force_sync { | |
| self.sync_deletions(); | |
| self.sync_additions(); | |
| } else { | |
| if self.delta_minus.nvals() > delta_max_pending_changes { | |
| self.sync_deletions(); | |
| } | |
| if self.delta_plus.nvals() > delta_max_pending_changes { | |
| self.sync_additions(); | |
| } | |
| } | |
| + log::debug("Sync completed."); | |
| self.matrix.wait(); | |
| self.delta_plus.wait(); | |
| self.delta_minus.wait(); | |
| } |
| /// Sets the element of this [`DeltaMatrix`]. | ||
| pub fn set_element_bool( | ||
| &mut self, | ||
| i: u64, | ||
| j: u64, | ||
| ) { | ||
| if let Some(t) = self.transposed.as_mut() { | ||
| t.set_element_bool(j, i); | ||
| } | ||
|
|
||
| // if the value marked as deleted in dm remove it | ||
| // otherwise if it is not presented in m set it in dp | ||
| if self.delta_minus.extract_element_bool(i, j).is_some() { | ||
| self.delta_minus.remove_element(i, j); | ||
| self.set_dirty(true); | ||
| } else if self.matrix.extract_element_bool(i, j).is_none() { | ||
| self.delta_plus.set_element_bool(true, i, j); | ||
| self.set_dirty(true); | ||
| } | ||
| } | ||
|
|
||
| /// Sets the element of this [`DeltaMatrix`]. | ||
| pub fn set_element_u64( | ||
| &mut self, | ||
| x: u64, | ||
| i: u64, | ||
| j: u64, | ||
| ) { | ||
| if let Some(t) = self.transposed.as_mut() { | ||
| t.set_element_bool(j, i); | ||
| } | ||
|
|
||
| // if the value marked as deleted in dm remove it | ||
| // otherwise if it is not presented in m set it in dp | ||
| if self.delta_minus.extract_element_bool(i, j).is_some() { | ||
| self.delta_minus.remove_element(i, j); | ||
| self.matrix.set_element_u64(x, i, j); | ||
| self.set_dirty(true); | ||
| } else if self.matrix.extract_element_u64(i, j).is_none() { | ||
| self.delta_plus.set_element_u64(x, i, j); | ||
| self.set_dirty(true); | ||
| } else { | ||
| self.matrix.set_element_u64(x, i, j); | ||
| } | ||
| } |
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Tip
Codebase Verification
Add test coverage for set_element_u64 method.
The set_element_bool method is well-covered by existing tests, but there are no test cases for the set_element_u64 method. Ensure that the set_element_u64 method is adequately tested to cover various scenarios, including edge cases.
- Add test cases for
set_element_u64insrc/graph/matrix/delta_matrix.rs.
Analysis chain
Review and optimize element setting logic in DeltaMatrix.
The methods set_element_bool and set_element_u64 involve complex conditional logic and direct manipulation of matrix states. Ensure that these methods handle all edge cases correctly, especially under concurrent modifications. Consider refactoring to simplify the logic and improve readability.
- if self.delta_minus.extract_element_bool(i, j).is_some() {
- self.delta_minus.remove_element(i, j);
- self.set_dirty(true);
- } else if self.matrix.extract_element_bool(i, j).is_none() {
- self.delta_plus.set_element_bool(true, i, j);
- self.set_dirty(true);
- }
+ self.manage_element_state(i, j);Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash
# Description: Verify the logic for setting elements in `set_element_bool` and `set_element_u64`.
# Test: Search for tests covering the `set_element_bool` and `set_element_u64` methods. Expect: Tests that cover various scenarios including edge cases.
rg --type rust 'set_element_bool' --files-with-matches | xargs rg 'test'
rg --type rust 'set_element_u64' --files-with-matches | xargs rg 'test'
Length of output: 4445
Script:
#!/bin/bash
# Extract the content of test functions in src/graph/matrix/delta_matrix.rs and src/graph/matrix/delta_matrix_iter.rs
# Extract test functions from delta_matrix.rs
rg --type rust --no-heading --line-number -A 10 'fn test_' src/graph/matrix/delta_matrix.rs
# Extract test functions from delta_matrix_iter.rs
rg --type rust --no-heading --line-number -A 10 'fn test_' src/graph/matrix/delta_matrix_iter.rs
Length of output: 5626
Script:
#!/bin/bash
# Search for calls to set_element_u64 within the test functions in src/graph/matrix/delta_matrix.rs and src/graph/matrix/delta_matrix_iter.rs
# Search for set_element_u64 in delta_matrix.rs
rg --type rust 'set_element_u64' src/graph/matrix/delta_matrix.rs
# Search for set_element_u64 in delta_matrix_iter.rs
rg --type rust 'set_element_u64' src/graph/matrix/delta_matrix_iter.rs
Length of output: 318
There was a problem hiding this comment.
Actionable comments posted: 2
Outside diff range and nitpick comments (2)
build.rs (2)
1-1: Consider adding a module-level comment.Adding a comment at the beginning of the file to explain the purpose and functionality of the
build.rsscript can improve readability and maintainability.// This build script sets linker arguments based on environment variables.
12-15: Use a consistent format for linker arguments.Using a consistent format for linker arguments can improve readability. Also, consider using
format!for better string interpolation.println!("cargo:rustc-link-arg=-Wl,-rpath,{}", format!("{}/src", bin_root)); println!("cargo:rustc-link-arg={}/src/falkordb.so", bin_root); println!("cargo:rustc-link-arg=-L{}", graphblas_dir); println!("cargo:rustc-link-arg=-lgraphblas");
| let bin_root = env::var("BINROOT"); | ||
| if let Ok(bin_root) = bin_root { |
There was a problem hiding this comment.
Handle potential errors from environment variables.
Currently, the code unwraps the GRAPHBLAS_BINDIR and CLANG environment variables without handling potential errors. Consider using expect with a meaningful error message or handling the Result properly.
let graphblas_dir = env::var("GRAPHBLAS_BINDIR").expect("GRAPHBLAS_BINDIR not set");
let clang = env::var("CLANG").unwrap_or_else(|_| "0".to_string());| if clang == "1" { | ||
| println!("cargo:rustc-link-arg=-L/opt/homebrew/opt/libomp/lib"); | ||
| println!("cargo:rustc-link-arg=-L/usr/lib/llvm-17/lib"); | ||
| println!("cargo:rustc-link-arg=-L/usr/lib/llvm-18/lib/"); | ||
| println!("cargo:rustc-link-arg=-lomp"); | ||
| } else { | ||
| println!("cargo:rustc-link-arg=-lgomp"); | ||
| } |
There was a problem hiding this comment.
Simplify conditional logic for setting linker arguments.
The conditional logic for setting linker arguments based on the clang variable can be simplified for better readability.
if clang == "1" {
for dir in ["/opt/homebrew/opt/libomp/lib", "/usr/lib/llvm-17/lib", "/usr/lib/llvm-18/lib/"] {
println!("cargo:rustc-link-arg=-L{}", dir);
}
println!("cargo:rustc-link-arg=-lomp");
} else {
println!("cargo:rustc-link-arg=-lgomp");
}
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Actionable comments posted: 0
Review details
Configuration used: CodeRabbit UI
Review profile: CHILL
Files selected for processing (3)
- build.rs (1 hunks)
- src/graph/matrix/ffi.rs (1 hunks)
- src/graph/matrix/sparse_matrix.rs (1 hunks)
Files not reviewed due to server errors (2)
- src/graph/matrix/ffi.rs
- src/graph/matrix/sparse_matrix.rs
Files skipped from review as they are similar to previous changes (1)
- build.rs
Summary by CodeRabbit
New Features
DeltaMatrixfor efficient sparse matrix management, supporting element modification, resizing, matrix operations, and synchronization.SparseMatrixwith comprehensive operations for managing sparse matrices, including element access and matrix manipulation.DeltaMatrixoperations, enhancing interoperability with C code.Chores
build.rsto dynamically set linker arguments based on environment variables.