From df3ac1a4a17d1edd4e4961fef6ade293f7760f5e Mon Sep 17 00:00:00 2001 From: whitews Date: Sat, 2 Nov 2024 22:43:23 -0400 Subject: [PATCH 1/3] update README --- README.md | 18 ++++++++++-------- 1 file changed, 10 insertions(+), 8 deletions(-) diff --git a/README.md b/README.md index b15b04cf..77de6ec3 100644 --- a/README.md +++ b/README.md @@ -86,15 +86,15 @@ Required Python dependencies: * [flowio](https://github.com/whitews/flowio) >= 1.3.0 * [flowutils](https://github.com/whitews/flowutils) >= 1.1.0 -* anytree >= 2.9 -* bokeh >= 3.1 -* contourpy >= 1.1.0 -* lxml >= 4.9 -* networkx >= 3.1 +* anytree >= 2.12 +* bokeh >= 3.4 +* contourpy >= 1.2.0 +* lxml >= 5.1 +* networkx >= 3.2 * numpy >= 1.22, <2 -* pandas >= 2.0 -* psutils >= 5.8 -* scipy >= 1.8 +* pandas >= 2.1 +* psutils >= 5.9 +* scipy >= 1.11.1 ## Installation @@ -161,6 +161,8 @@ Want to get involved in the development of FlowKit? The following projects and publications have utilized FlowKit. If you have a package or publication where FlowKit was used, and you want it listed here, feel free to [submit an issue](https://github.com/whitews/FlowKit/issues/new/) letting me know. +* Ishii, Hiroto et al. "Establishing a method for the cryopreservation of viable peripheral blood mononuclear cells in the International Space Station." npj Microgravity vol. 10, Article number: 84 (2024), [doi:10.1038/s41526-024-00423-2](https://doi.org/10.1038/s41526-024-00423-2) +* Dyikanov, Daniiar et al. "Comprehensive peripheral blood immunoprofiling reveals five immunotypes with immunotherapy response characteristics in patients with cancer." Cancer Cell vol. 42,5 (2024), [doi:10.1016/j.ccell.2024.04.008](https://doi.org/10.1016/j.ccell.2024.04.008) * Mortelecque, Justine et al. "A selection and optimization strategy for single-domain antibodies targeting the PHF6 linear peptide within the Tau intrinsically disordered protein." Journal of Biological Chemistry (2024), [doi:10.1016/j.jbc.2024.107163](https://www.jbc.org/article/S0021-9258(24)01658-2/fulltext) * Schmidt, Florian et al. "In-depth analysis of human virus-specific CD8+ T cells delineates unique phenotypic signatures for T cell specificity prediction." Cell Reports vol. 42,10 (2023), [doi:10.1016/j.celrep.2023.113250](https://www.cell.com/cell-reports/fulltext/S2211-1247(23)01262-7) * Schuster, Jonas et al. “Combining real-time fluorescence spectroscopy and flow cytometry to reveal new insights in DOC and cell characterization of drinking water.” Frontiers in Environmental Chemistry (2022), [doi:10.3389/fenvc.2022.931067](https://www.frontiersin.org/articles/10.3389/fenvc.2022.931067/full) From 2dfc6a983c3bea61ea5f4a9f85cc77fdf0ab939d Mon Sep 17 00:00:00 2001 From: whitews Date: Sun, 3 Nov 2024 09:23:27 -0500 Subject: [PATCH 2/3] update README --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 77de6ec3..5b79bd90 100644 --- a/README.md +++ b/README.md @@ -61,7 +61,7 @@ FlowKit is a Python toolkit for flow cytometry analysis and visualization, with * Export gating strategies as a valid GatingML XML document * Import FlowJo 10 workspace files, supporting the following features: * Linear, logarithmic, bi-exponential, and logicle transforms - * Polygon, rectangle, ellipse, and quadrant gates + * Polygon, rectangle, ellipse, quadrant and Boolean gates * Programmatically create gating strategies including polygon, rectangle, range, ellipsoid, quadrant, and boolean gates * Retrieve gating results as a Pandas DataFrame * Visualization @@ -73,7 +73,7 @@ FlowKit is a Python toolkit for flow cytometry analysis and visualization, with ## Requirements -FlowKit supports Python version 3.8 - 3.12. All dependencies are installable +FlowKit supports Python version 3.9 - 3.12. All dependencies are installable via pip, and are listed below. > **NOTE**: FlowUtils uses C extensions for significant performance From cd649f111b962ed7881b27fcc3bcd0f301bc7a5a Mon Sep 17 00:00:00 2001 From: whitews Date: Sun, 3 Nov 2024 09:52:02 -0500 Subject: [PATCH 3/3] release 1.2.0 --- src/flowkit/_version.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/flowkit/_version.py b/src/flowkit/_version.py index 29ffa18b..913906c7 100644 --- a/src/flowkit/_version.py +++ b/src/flowkit/_version.py @@ -1,4 +1,4 @@ """ FlowKit version """ -__version__ = "1.2.0rc1" +__version__ = "1.2.0"