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rename to Framework/Crystal/inc/MantidCrystal/LatticeErrors.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/LoadHKL.h b/Framework/Crystal/inc/MantidCrystal/LoadHKL.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/LoadHKL.h
rename to Framework/Crystal/inc/MantidCrystal/LoadHKL.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/LoadIsawPeaks.h b/Framework/Crystal/inc/MantidCrystal/LoadIsawPeaks.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/LoadIsawPeaks.h
rename to Framework/Crystal/inc/MantidCrystal/LoadIsawPeaks.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/LoadIsawSpectrum.h b/Framework/Crystal/inc/MantidCrystal/LoadIsawSpectrum.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/LoadIsawSpectrum.h
rename to Framework/Crystal/inc/MantidCrystal/LoadIsawSpectrum.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/LoadIsawUB.h b/Framework/Crystal/inc/MantidCrystal/LoadIsawUB.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/LoadIsawUB.h
rename to Framework/Crystal/inc/MantidCrystal/LoadIsawUB.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/MaskPeaksWorkspace.h b/Framework/Crystal/inc/MantidCrystal/MaskPeaksWorkspace.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/MaskPeaksWorkspace.h
rename to Framework/Crystal/inc/MantidCrystal/MaskPeaksWorkspace.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/NormaliseVanadium.h b/Framework/Crystal/inc/MantidCrystal/NormaliseVanadium.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/NormaliseVanadium.h
rename to Framework/Crystal/inc/MantidCrystal/NormaliseVanadium.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/OptimizeCrystalPlacement.h b/Framework/Crystal/inc/MantidCrystal/OptimizeCrystalPlacement.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/OptimizeCrystalPlacement.h
rename to Framework/Crystal/inc/MantidCrystal/OptimizeCrystalPlacement.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/OptimizeExtinctionParameters.h b/Framework/Crystal/inc/MantidCrystal/OptimizeExtinctionParameters.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/OptimizeExtinctionParameters.h
rename to Framework/Crystal/inc/MantidCrystal/OptimizeExtinctionParameters.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/OptimizeLatticeForCellType.h b/Framework/Crystal/inc/MantidCrystal/OptimizeLatticeForCellType.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/OptimizeLatticeForCellType.h
rename to Framework/Crystal/inc/MantidCrystal/OptimizeLatticeForCellType.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/PeakBackground.h b/Framework/Crystal/inc/MantidCrystal/PeakBackground.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/PeakBackground.h
rename to Framework/Crystal/inc/MantidCrystal/PeakBackground.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/PeakClusterProjection.h b/Framework/Crystal/inc/MantidCrystal/PeakClusterProjection.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/PeakClusterProjection.h
rename to Framework/Crystal/inc/MantidCrystal/PeakClusterProjection.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/PeakHKLErrors.h b/Framework/Crystal/inc/MantidCrystal/PeakHKLErrors.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/PeakHKLErrors.h
rename to Framework/Crystal/inc/MantidCrystal/PeakHKLErrors.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/PeakIntegration.h b/Framework/Crystal/inc/MantidCrystal/PeakIntegration.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/PeakIntegration.h
rename to Framework/Crystal/inc/MantidCrystal/PeakIntegration.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/PeakIntensityVsRadius.h b/Framework/Crystal/inc/MantidCrystal/PeakIntensityVsRadius.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/PeakIntensityVsRadius.h
rename to Framework/Crystal/inc/MantidCrystal/PeakIntensityVsRadius.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/PeaksInRegion.h b/Framework/Crystal/inc/MantidCrystal/PeaksInRegion.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/PeaksInRegion.h
rename to Framework/Crystal/inc/MantidCrystal/PeaksInRegion.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/PeaksIntersection.h b/Framework/Crystal/inc/MantidCrystal/PeaksIntersection.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/PeaksIntersection.h
rename to Framework/Crystal/inc/MantidCrystal/PeaksIntersection.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/PeaksOnSurface.h b/Framework/Crystal/inc/MantidCrystal/PeaksOnSurface.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/PeaksOnSurface.h
rename to Framework/Crystal/inc/MantidCrystal/PeaksOnSurface.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/PredictFractionalPeaks.h b/Framework/Crystal/inc/MantidCrystal/PredictFractionalPeaks.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/PredictFractionalPeaks.h
rename to Framework/Crystal/inc/MantidCrystal/PredictFractionalPeaks.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/PredictPeaks.h b/Framework/Crystal/inc/MantidCrystal/PredictPeaks.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/PredictPeaks.h
rename to Framework/Crystal/inc/MantidCrystal/PredictPeaks.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/SCDCalibratePanels.h b/Framework/Crystal/inc/MantidCrystal/SCDCalibratePanels.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/SCDCalibratePanels.h
rename to Framework/Crystal/inc/MantidCrystal/SCDCalibratePanels.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/SCDPanelErrors.h b/Framework/Crystal/inc/MantidCrystal/SCDPanelErrors.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/SCDPanelErrors.h
rename to Framework/Crystal/inc/MantidCrystal/SCDPanelErrors.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/SaveHKL.h b/Framework/Crystal/inc/MantidCrystal/SaveHKL.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/SaveHKL.h
rename to Framework/Crystal/inc/MantidCrystal/SaveHKL.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/SaveIsawPeaks.h b/Framework/Crystal/inc/MantidCrystal/SaveIsawPeaks.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/SaveIsawPeaks.h
rename to Framework/Crystal/inc/MantidCrystal/SaveIsawPeaks.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/SaveIsawUB.h b/Framework/Crystal/inc/MantidCrystal/SaveIsawUB.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/SaveIsawUB.h
rename to Framework/Crystal/inc/MantidCrystal/SaveIsawUB.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/SaveLauenorm.h b/Framework/Crystal/inc/MantidCrystal/SaveLauenorm.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/SaveLauenorm.h
rename to Framework/Crystal/inc/MantidCrystal/SaveLauenorm.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/SavePeaksFile.h b/Framework/Crystal/inc/MantidCrystal/SavePeaksFile.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/SavePeaksFile.h
rename to Framework/Crystal/inc/MantidCrystal/SavePeaksFile.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/SelectCellOfType.h b/Framework/Crystal/inc/MantidCrystal/SelectCellOfType.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/SelectCellOfType.h
rename to Framework/Crystal/inc/MantidCrystal/SelectCellOfType.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/SelectCellWithForm.h b/Framework/Crystal/inc/MantidCrystal/SelectCellWithForm.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/SelectCellWithForm.h
rename to Framework/Crystal/inc/MantidCrystal/SelectCellWithForm.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/SetGoniometer.h b/Framework/Crystal/inc/MantidCrystal/SetGoniometer.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/SetGoniometer.h
rename to Framework/Crystal/inc/MantidCrystal/SetGoniometer.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/SetSpecialCoordinates.h b/Framework/Crystal/inc/MantidCrystal/SetSpecialCoordinates.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/SetSpecialCoordinates.h
rename to Framework/Crystal/inc/MantidCrystal/SetSpecialCoordinates.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/SetUB.h b/Framework/Crystal/inc/MantidCrystal/SetUB.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/SetUB.h
rename to Framework/Crystal/inc/MantidCrystal/SetUB.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/ShowPeakHKLOffsets.h b/Framework/Crystal/inc/MantidCrystal/ShowPeakHKLOffsets.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/ShowPeakHKLOffsets.h
rename to Framework/Crystal/inc/MantidCrystal/ShowPeakHKLOffsets.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/ShowPossibleCells.h b/Framework/Crystal/inc/MantidCrystal/ShowPossibleCells.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/ShowPossibleCells.h
rename to Framework/Crystal/inc/MantidCrystal/ShowPossibleCells.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/SortHKL.h b/Framework/Crystal/inc/MantidCrystal/SortHKL.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/SortHKL.h
rename to Framework/Crystal/inc/MantidCrystal/SortHKL.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/SortPeaksWorkspace.h b/Framework/Crystal/inc/MantidCrystal/SortPeaksWorkspace.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/SortPeaksWorkspace.h
rename to Framework/Crystal/inc/MantidCrystal/SortPeaksWorkspace.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/StatisticsOfPeaksWorkspace.h b/Framework/Crystal/inc/MantidCrystal/StatisticsOfPeaksWorkspace.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/StatisticsOfPeaksWorkspace.h
rename to Framework/Crystal/inc/MantidCrystal/StatisticsOfPeaksWorkspace.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/TOFExtinction.h b/Framework/Crystal/inc/MantidCrystal/TOFExtinction.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/TOFExtinction.h
rename to Framework/Crystal/inc/MantidCrystal/TOFExtinction.h
diff --git a/Code/Mantid/Framework/Crystal/inc/MantidCrystal/TransformHKL.h b/Framework/Crystal/inc/MantidCrystal/TransformHKL.h
similarity index 100%
rename from Code/Mantid/Framework/Crystal/inc/MantidCrystal/TransformHKL.h
rename to Framework/Crystal/inc/MantidCrystal/TransformHKL.h
diff --git a/Code/Mantid/Framework/Crystal/src/AddPeakHKL.cpp b/Framework/Crystal/src/AddPeakHKL.cpp
similarity index 100%
rename from Code/Mantid/Framework/Crystal/src/AddPeakHKL.cpp
rename to Framework/Crystal/src/AddPeakHKL.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/AnvredCorrection.cpp b/Framework/Crystal/src/AnvredCorrection.cpp
similarity index 100%
rename from Code/Mantid/Framework/Crystal/src/AnvredCorrection.cpp
rename to Framework/Crystal/src/AnvredCorrection.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/CalculatePeaksHKL.cpp b/Framework/Crystal/src/CalculatePeaksHKL.cpp
similarity index 100%
rename from Code/Mantid/Framework/Crystal/src/CalculatePeaksHKL.cpp
rename to Framework/Crystal/src/CalculatePeaksHKL.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/CalculateUMatrix.cpp b/Framework/Crystal/src/CalculateUMatrix.cpp
similarity index 100%
rename from Code/Mantid/Framework/Crystal/src/CalculateUMatrix.cpp
rename to Framework/Crystal/src/CalculateUMatrix.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/CentroidPeaks.cpp b/Framework/Crystal/src/CentroidPeaks.cpp
similarity index 100%
rename from Code/Mantid/Framework/Crystal/src/CentroidPeaks.cpp
rename to Framework/Crystal/src/CentroidPeaks.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/ClearUB.cpp b/Framework/Crystal/src/ClearUB.cpp
similarity index 100%
rename from Code/Mantid/Framework/Crystal/src/ClearUB.cpp
rename to Framework/Crystal/src/ClearUB.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/Cluster.cpp b/Framework/Crystal/src/Cluster.cpp
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rename from Code/Mantid/Framework/Crystal/src/Cluster.cpp
rename to Framework/Crystal/src/Cluster.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/ClusterRegister.cpp b/Framework/Crystal/src/ClusterRegister.cpp
similarity index 100%
rename from Code/Mantid/Framework/Crystal/src/ClusterRegister.cpp
rename to Framework/Crystal/src/ClusterRegister.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/CombinePeaksWorkspaces.cpp b/Framework/Crystal/src/CombinePeaksWorkspaces.cpp
similarity index 100%
rename from Code/Mantid/Framework/Crystal/src/CombinePeaksWorkspaces.cpp
rename to Framework/Crystal/src/CombinePeaksWorkspaces.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/CompositeCluster.cpp b/Framework/Crystal/src/CompositeCluster.cpp
similarity index 100%
rename from Code/Mantid/Framework/Crystal/src/CompositeCluster.cpp
rename to Framework/Crystal/src/CompositeCluster.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/ConnectedComponentLabeling.cpp b/Framework/Crystal/src/ConnectedComponentLabeling.cpp
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rename from Code/Mantid/Framework/Crystal/src/ConnectedComponentLabeling.cpp
rename to Framework/Crystal/src/ConnectedComponentLabeling.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/DiffPeaksWorkspaces.cpp b/Framework/Crystal/src/DiffPeaksWorkspaces.cpp
similarity index 100%
rename from Code/Mantid/Framework/Crystal/src/DiffPeaksWorkspaces.cpp
rename to Framework/Crystal/src/DiffPeaksWorkspaces.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/DisjointElement.cpp b/Framework/Crystal/src/DisjointElement.cpp
similarity index 100%
rename from Code/Mantid/Framework/Crystal/src/DisjointElement.cpp
rename to Framework/Crystal/src/DisjointElement.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/FilterPeaks.cpp b/Framework/Crystal/src/FilterPeaks.cpp
similarity index 100%
rename from Code/Mantid/Framework/Crystal/src/FilterPeaks.cpp
rename to Framework/Crystal/src/FilterPeaks.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/FindClusterFaces.cpp b/Framework/Crystal/src/FindClusterFaces.cpp
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rename to Framework/Crystal/src/FindClusterFaces.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/FindSXPeaks.cpp b/Framework/Crystal/src/FindSXPeaks.cpp
similarity index 100%
rename from Code/Mantid/Framework/Crystal/src/FindSXPeaks.cpp
rename to Framework/Crystal/src/FindSXPeaks.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/FindUBUsingFFT.cpp b/Framework/Crystal/src/FindUBUsingFFT.cpp
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rename from Code/Mantid/Framework/Crystal/src/FindUBUsingFFT.cpp
rename to Framework/Crystal/src/FindUBUsingFFT.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/FindUBUsingIndexedPeaks.cpp b/Framework/Crystal/src/FindUBUsingIndexedPeaks.cpp
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rename from Code/Mantid/Framework/Crystal/src/FindUBUsingIndexedPeaks.cpp
rename to Framework/Crystal/src/FindUBUsingIndexedPeaks.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/FindUBUsingLatticeParameters.cpp b/Framework/Crystal/src/FindUBUsingLatticeParameters.cpp
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rename from Code/Mantid/Framework/Crystal/src/FindUBUsingLatticeParameters.cpp
rename to Framework/Crystal/src/FindUBUsingLatticeParameters.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/FindUBUsingMinMaxD.cpp b/Framework/Crystal/src/FindUBUsingMinMaxD.cpp
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rename from Code/Mantid/Framework/Crystal/src/FindUBUsingMinMaxD.cpp
rename to Framework/Crystal/src/FindUBUsingMinMaxD.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/GoniometerAnglesFromPhiRotation.cpp b/Framework/Crystal/src/GoniometerAnglesFromPhiRotation.cpp
similarity index 100%
rename from Code/Mantid/Framework/Crystal/src/GoniometerAnglesFromPhiRotation.cpp
rename to Framework/Crystal/src/GoniometerAnglesFromPhiRotation.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/HardThresholdBackground.cpp b/Framework/Crystal/src/HardThresholdBackground.cpp
similarity index 100%
rename from Code/Mantid/Framework/Crystal/src/HardThresholdBackground.cpp
rename to Framework/Crystal/src/HardThresholdBackground.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/HasUB.cpp b/Framework/Crystal/src/HasUB.cpp
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rename from Code/Mantid/Framework/Crystal/src/HasUB.cpp
rename to Framework/Crystal/src/HasUB.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/IndexPeaks.cpp b/Framework/Crystal/src/IndexPeaks.cpp
similarity index 100%
rename from Code/Mantid/Framework/Crystal/src/IndexPeaks.cpp
rename to Framework/Crystal/src/IndexPeaks.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/IndexSXPeaks.cpp b/Framework/Crystal/src/IndexSXPeaks.cpp
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rename from Code/Mantid/Framework/Crystal/src/IndexSXPeaks.cpp
rename to Framework/Crystal/src/IndexSXPeaks.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/IntegratePeakTimeSlices.cpp b/Framework/Crystal/src/IntegratePeakTimeSlices.cpp
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rename from Code/Mantid/Framework/Crystal/src/IntegratePeakTimeSlices.cpp
rename to Framework/Crystal/src/IntegratePeakTimeSlices.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/IntegratePeaksHybrid.cpp b/Framework/Crystal/src/IntegratePeaksHybrid.cpp
similarity index 100%
rename from Code/Mantid/Framework/Crystal/src/IntegratePeaksHybrid.cpp
rename to Framework/Crystal/src/IntegratePeaksHybrid.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/IntegratePeaksUsingClusters.cpp b/Framework/Crystal/src/IntegratePeaksUsingClusters.cpp
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rename from Code/Mantid/Framework/Crystal/src/IntegratePeaksUsingClusters.cpp
rename to Framework/Crystal/src/IntegratePeaksUsingClusters.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/LatticeErrors.cpp b/Framework/Crystal/src/LatticeErrors.cpp
similarity index 100%
rename from Code/Mantid/Framework/Crystal/src/LatticeErrors.cpp
rename to Framework/Crystal/src/LatticeErrors.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/LoadHKL.cpp b/Framework/Crystal/src/LoadHKL.cpp
similarity index 100%
rename from Code/Mantid/Framework/Crystal/src/LoadHKL.cpp
rename to Framework/Crystal/src/LoadHKL.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/LoadIsawPeaks.cpp b/Framework/Crystal/src/LoadIsawPeaks.cpp
similarity index 100%
rename from Code/Mantid/Framework/Crystal/src/LoadIsawPeaks.cpp
rename to Framework/Crystal/src/LoadIsawPeaks.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/LoadIsawSpectrum.cpp b/Framework/Crystal/src/LoadIsawSpectrum.cpp
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rename from Code/Mantid/Framework/Crystal/src/LoadIsawSpectrum.cpp
rename to Framework/Crystal/src/LoadIsawSpectrum.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/LoadIsawUB.cpp b/Framework/Crystal/src/LoadIsawUB.cpp
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rename from Code/Mantid/Framework/Crystal/src/LoadIsawUB.cpp
rename to Framework/Crystal/src/LoadIsawUB.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/MaskPeaksWorkspace.cpp b/Framework/Crystal/src/MaskPeaksWorkspace.cpp
similarity index 100%
rename from Code/Mantid/Framework/Crystal/src/MaskPeaksWorkspace.cpp
rename to Framework/Crystal/src/MaskPeaksWorkspace.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/NormaliseVanadium.cpp b/Framework/Crystal/src/NormaliseVanadium.cpp
similarity index 100%
rename from Code/Mantid/Framework/Crystal/src/NormaliseVanadium.cpp
rename to Framework/Crystal/src/NormaliseVanadium.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/OptimizeCrystalPlacement.cpp b/Framework/Crystal/src/OptimizeCrystalPlacement.cpp
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rename from Code/Mantid/Framework/Crystal/src/OptimizeCrystalPlacement.cpp
rename to Framework/Crystal/src/OptimizeCrystalPlacement.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/OptimizeExtinctionParameters.cpp b/Framework/Crystal/src/OptimizeExtinctionParameters.cpp
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rename from Code/Mantid/Framework/Crystal/src/OptimizeExtinctionParameters.cpp
rename to Framework/Crystal/src/OptimizeExtinctionParameters.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/OptimizeLatticeForCellType.cpp b/Framework/Crystal/src/OptimizeLatticeForCellType.cpp
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rename to Framework/Crystal/src/OptimizeLatticeForCellType.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/PeakBackground.cpp b/Framework/Crystal/src/PeakBackground.cpp
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rename from Code/Mantid/Framework/Crystal/src/PeakBackground.cpp
rename to Framework/Crystal/src/PeakBackground.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/PeakClusterProjection.cpp b/Framework/Crystal/src/PeakClusterProjection.cpp
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rename from Code/Mantid/Framework/Crystal/src/PeakClusterProjection.cpp
rename to Framework/Crystal/src/PeakClusterProjection.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/PeakHKLErrors.cpp b/Framework/Crystal/src/PeakHKLErrors.cpp
similarity index 100%
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similarity index 100%
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diff --git a/Code/Mantid/Framework/Crystal/src/PeakIntensityVsRadius.cpp b/Framework/Crystal/src/PeakIntensityVsRadius.cpp
similarity index 100%
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diff --git a/Code/Mantid/Framework/Crystal/src/PeaksIntersection.cpp b/Framework/Crystal/src/PeaksIntersection.cpp
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diff --git a/Code/Mantid/Framework/Crystal/src/PredictFractionalPeaks.cpp b/Framework/Crystal/src/PredictFractionalPeaks.cpp
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diff --git a/Code/Mantid/Framework/Crystal/src/SCDCalibratePanels.cpp b/Framework/Crystal/src/SCDCalibratePanels.cpp
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diff --git a/Code/Mantid/Framework/Crystal/src/SaveHKL.cpp b/Framework/Crystal/src/SaveHKL.cpp
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diff --git a/Code/Mantid/Framework/Crystal/src/SavePeaksFile.cpp b/Framework/Crystal/src/SavePeaksFile.cpp
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diff --git a/Code/Mantid/Framework/Crystal/src/SelectCellOfType.cpp b/Framework/Crystal/src/SelectCellOfType.cpp
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diff --git a/Code/Mantid/Framework/Crystal/src/SetGoniometer.cpp b/Framework/Crystal/src/SetGoniometer.cpp
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diff --git a/Code/Mantid/Framework/Crystal/src/SetSpecialCoordinates.cpp b/Framework/Crystal/src/SetSpecialCoordinates.cpp
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diff --git a/Code/Mantid/Framework/Crystal/src/SetUB.cpp b/Framework/Crystal/src/SetUB.cpp
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diff --git a/Code/Mantid/Framework/Crystal/src/ShowPeakHKLOffsets.cpp b/Framework/Crystal/src/ShowPeakHKLOffsets.cpp
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diff --git a/Code/Mantid/Framework/Crystal/src/ShowPossibleCells.cpp b/Framework/Crystal/src/ShowPossibleCells.cpp
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diff --git a/Code/Mantid/Framework/Crystal/src/SortHKL.cpp b/Framework/Crystal/src/SortHKL.cpp
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diff --git a/Code/Mantid/Framework/Crystal/src/SortPeaksWorkspace.cpp b/Framework/Crystal/src/SortPeaksWorkspace.cpp
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rename from Code/Mantid/Framework/Crystal/src/SortPeaksWorkspace.cpp
rename to Framework/Crystal/src/SortPeaksWorkspace.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/StatisticsOfPeaksWorkspace.cpp b/Framework/Crystal/src/StatisticsOfPeaksWorkspace.cpp
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rename from Code/Mantid/Framework/Crystal/src/StatisticsOfPeaksWorkspace.cpp
rename to Framework/Crystal/src/StatisticsOfPeaksWorkspace.cpp
diff --git a/Code/Mantid/Framework/Crystal/src/TOFExtinction.cpp b/Framework/Crystal/src/TOFExtinction.cpp
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diff --git a/Code/Mantid/Framework/Crystal/src/TransformHKL.cpp b/Framework/Crystal/src/TransformHKL.cpp
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diff --git a/Code/Mantid/Framework/Crystal/test/AddPeakHKLTest.h b/Framework/Crystal/test/AddPeakHKLTest.h
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rename to Framework/Crystal/test/AddPeakHKLTest.h
diff --git a/Code/Mantid/Framework/Crystal/test/AnvredCorrectionTest.h b/Framework/Crystal/test/AnvredCorrectionTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/CMakeLists.txt b/Framework/Crystal/test/CMakeLists.txt
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diff --git a/Code/Mantid/Framework/Crystal/test/CalculatePeaksHKLTest.h b/Framework/Crystal/test/CalculatePeaksHKLTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/CalculateUMatrixTest.h b/Framework/Crystal/test/CalculateUMatrixTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/CentroidPeaksTest.h b/Framework/Crystal/test/CentroidPeaksTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/ClearUBTest.h b/Framework/Crystal/test/ClearUBTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/ClusterIntegrationBaseTest.h b/Framework/Crystal/test/ClusterIntegrationBaseTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/ClusterRegisterTest.h b/Framework/Crystal/test/ClusterRegisterTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/ClusterTest.h b/Framework/Crystal/test/ClusterTest.h
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rename from Code/Mantid/Framework/Crystal/test/ClusterTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/CombinePeaksWorkspacesTest.h b/Framework/Crystal/test/CombinePeaksWorkspacesTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/CompositeClusterTest.h b/Framework/Crystal/test/CompositeClusterTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/ConnectedComponentLabelingTest.h b/Framework/Crystal/test/ConnectedComponentLabelingTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/DiffPeaksWorkspacesTest.h b/Framework/Crystal/test/DiffPeaksWorkspacesTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/DisjointElementTest.h b/Framework/Crystal/test/DisjointElementTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/FilterPeaksTest.h b/Framework/Crystal/test/FilterPeaksTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/FindClusterFacesTest.h b/Framework/Crystal/test/FindClusterFacesTest.h
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rename to Framework/Crystal/test/FindClusterFacesTest.h
diff --git a/Code/Mantid/Framework/Crystal/test/FindSXPeaksTest.h b/Framework/Crystal/test/FindSXPeaksTest.h
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rename to Framework/Crystal/test/FindSXPeaksTest.h
diff --git a/Code/Mantid/Framework/Crystal/test/FindUBUsingFFTTest.h b/Framework/Crystal/test/FindUBUsingFFTTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/FindUBUsingIndexedPeaksTest.h b/Framework/Crystal/test/FindUBUsingIndexedPeaksTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/FindUBUsingLatticeParametersTest.h b/Framework/Crystal/test/FindUBUsingLatticeParametersTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/FindUBUsingMinMaxDTest.h b/Framework/Crystal/test/FindUBUsingMinMaxDTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/GoniometerAnglesFromPhiRotationTest.h b/Framework/Crystal/test/GoniometerAnglesFromPhiRotationTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/HardThresholdBackgroundTest.h b/Framework/Crystal/test/HardThresholdBackgroundTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/HasUBTest.h b/Framework/Crystal/test/HasUBTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/IndexPeaksTest.h b/Framework/Crystal/test/IndexPeaksTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/IntegratePeakTimeSlicesTest.h b/Framework/Crystal/test/IntegratePeakTimeSlicesTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/IntegratePeaksUsingClustersTest.h b/Framework/Crystal/test/IntegratePeaksUsingClustersTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/LoadHKLTest.h b/Framework/Crystal/test/LoadHKLTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/LoadIsawPeaksTest.h b/Framework/Crystal/test/LoadIsawPeaksTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/NormaliseVanadiumTest.h b/Framework/Crystal/test/NormaliseVanadiumTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/OptimizeCrystalPlacementTest.h b/Framework/Crystal/test/OptimizeCrystalPlacementTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/OptimizeLatticeForCellTypeTest.h b/Framework/Crystal/test/OptimizeLatticeForCellTypeTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/PeakBackgroundTest.h b/Framework/Crystal/test/PeakBackgroundTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/PeakClusterProjectionTest.h b/Framework/Crystal/test/PeakClusterProjectionTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/PeakHKLErrorsTest.h b/Framework/Crystal/test/PeakHKLErrorsTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/PeakIntegrationTest.h b/Framework/Crystal/test/PeakIntegrationTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/PeakIntensityVsRadiusTest.h b/Framework/Crystal/test/PeakIntensityVsRadiusTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/PeaksInRegionTest.h b/Framework/Crystal/test/PeaksInRegionTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/SCDCalibratePanelsTest.h b/Framework/Crystal/test/SCDCalibratePanelsTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/SCDPanelErrorsTest.h b/Framework/Crystal/test/SCDPanelErrorsTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/SaveHKLTest.h b/Framework/Crystal/test/SaveHKLTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/SaveLauenormTest.h b/Framework/Crystal/test/SaveLauenormTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/SavePeaksFileTest.h b/Framework/Crystal/test/SavePeaksFileTest.h
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diff --git a/Code/Mantid/Framework/Crystal/test/SetGoniometerTest.h b/Framework/Crystal/test/SetGoniometerTest.h
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diff --git a/Code/Mantid/Framework/CurveFitting/CMakeLists.txt b/Framework/CurveFitting/CMakeLists.txt
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/BFGS_Minimizer.h b/Framework/CurveFitting/inc/MantidCurveFitting/BFGS_Minimizer.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/BSpline.h b/Framework/CurveFitting/inc/MantidCurveFitting/BSpline.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/BackgroundFunction.h b/Framework/CurveFitting/inc/MantidCurveFitting/BackgroundFunction.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/BivariateNormal.h b/Framework/CurveFitting/inc/MantidCurveFitting/BivariateNormal.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/Bk2BkExpConvPV.h b/Framework/CurveFitting/inc/MantidCurveFitting/Bk2BkExpConvPV.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/BoundaryConstraint.h b/Framework/CurveFitting/inc/MantidCurveFitting/BoundaryConstraint.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/CalculateChiSquared.h b/Framework/CurveFitting/inc/MantidCurveFitting/CalculateChiSquared.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/CalculateGammaBackground.h b/Framework/CurveFitting/inc/MantidCurveFitting/CalculateGammaBackground.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/CalculateMSVesuvio.h b/Framework/CurveFitting/inc/MantidCurveFitting/CalculateMSVesuvio.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/ChebfunBase.h b/Framework/CurveFitting/inc/MantidCurveFitting/ChebfunBase.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/ComptonPeakProfile.h b/Framework/CurveFitting/inc/MantidCurveFitting/ComptonPeakProfile.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/ComptonScatteringCountRate.h b/Framework/CurveFitting/inc/MantidCurveFitting/ComptonScatteringCountRate.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/ConvertToYSpace.h b/Framework/CurveFitting/inc/MantidCurveFitting/ConvertToYSpace.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/Convolution.h b/Framework/CurveFitting/inc/MantidCurveFitting/Convolution.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/ConvolveWorkspaces.h b/Framework/CurveFitting/inc/MantidCurveFitting/ConvolveWorkspaces.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/CostFuncFitting.h b/Framework/CurveFitting/inc/MantidCurveFitting/CostFuncFitting.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/CostFuncLeastSquares.h b/Framework/CurveFitting/inc/MantidCurveFitting/CostFuncLeastSquares.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/CostFuncRwp.h b/Framework/CurveFitting/inc/MantidCurveFitting/CostFuncRwp.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/CostFuncUnweightedLeastSquares.h b/Framework/CurveFitting/inc/MantidCurveFitting/CostFuncUnweightedLeastSquares.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/CubicSpline.h b/Framework/CurveFitting/inc/MantidCurveFitting/CubicSpline.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/DampingMinimizer.h b/Framework/CurveFitting/inc/MantidCurveFitting/DampingMinimizer.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/DeltaFunction.h b/Framework/CurveFitting/inc/MantidCurveFitting/DeltaFunction.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/DiffRotDiscreteCircle.h b/Framework/CurveFitting/inc/MantidCurveFitting/DiffRotDiscreteCircle.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/DiffSphere.h b/Framework/CurveFitting/inc/MantidCurveFitting/DiffSphere.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/DllConfig.h b/Framework/CurveFitting/inc/MantidCurveFitting/DllConfig.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/DynamicKuboToyabe.h b/Framework/CurveFitting/inc/MantidCurveFitting/DynamicKuboToyabe.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/EndErfc.h b/Framework/CurveFitting/inc/MantidCurveFitting/EndErfc.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/EstimatePeakErrors.h b/Framework/CurveFitting/inc/MantidCurveFitting/EstimatePeakErrors.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/EvaluateFunction.h b/Framework/CurveFitting/inc/MantidCurveFitting/EvaluateFunction.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/ExpDecay.h b/Framework/CurveFitting/inc/MantidCurveFitting/ExpDecay.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/FABADAMinimizer.h b/Framework/CurveFitting/inc/MantidCurveFitting/FABADAMinimizer.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/FRConjugateGradientMinimizer.h b/Framework/CurveFitting/inc/MantidCurveFitting/FRConjugateGradientMinimizer.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/Fit.h b/Framework/CurveFitting/inc/MantidCurveFitting/Fit.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/FitPowderDiffPeaks.h b/Framework/CurveFitting/inc/MantidCurveFitting/FitPowderDiffPeaks.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/FullprofPolynomial.h b/Framework/CurveFitting/inc/MantidCurveFitting/FullprofPolynomial.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/FunctionDomain1DSpectrumCreator.h b/Framework/CurveFitting/inc/MantidCurveFitting/FunctionDomain1DSpectrumCreator.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/GSLFunctions.h b/Framework/CurveFitting/inc/MantidCurveFitting/GSLFunctions.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/GausDecay.h b/Framework/CurveFitting/inc/MantidCurveFitting/GausDecay.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/GramCharlierComptonProfile.h b/Framework/CurveFitting/inc/MantidCurveFitting/GramCharlierComptonProfile.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/HalfComplex.h b/Framework/CurveFitting/inc/MantidCurveFitting/HalfComplex.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/IkedaCarpenterPV.h b/Framework/CurveFitting/inc/MantidCurveFitting/IkedaCarpenterPV.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/Jacobian.h b/Framework/CurveFitting/inc/MantidCurveFitting/Jacobian.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/LeBailFit.h b/Framework/CurveFitting/inc/MantidCurveFitting/LeBailFit.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/LevenbergMarquardtMinimizer.h b/Framework/CurveFitting/inc/MantidCurveFitting/LevenbergMarquardtMinimizer.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/LinearBackground.h b/Framework/CurveFitting/inc/MantidCurveFitting/LinearBackground.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/LogNormal.h b/Framework/CurveFitting/inc/MantidCurveFitting/LogNormal.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/Lorentzian.h b/Framework/CurveFitting/inc/MantidCurveFitting/Lorentzian.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/MSVesuvioHelpers.h b/Framework/CurveFitting/inc/MantidCurveFitting/MSVesuvioHelpers.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/MultiBG.h b/Framework/CurveFitting/inc/MantidCurveFitting/MultiBG.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/MultiDomainCreator.h b/Framework/CurveFitting/inc/MantidCurveFitting/MultiDomainCreator.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/MuonFInteraction.h b/Framework/CurveFitting/inc/MantidCurveFitting/MuonFInteraction.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/NeutronBk2BkExpConvPVoigt.h b/Framework/CurveFitting/inc/MantidCurveFitting/NeutronBk2BkExpConvPVoigt.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/NormaliseByPeakArea.h b/Framework/CurveFitting/inc/MantidCurveFitting/NormaliseByPeakArea.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/PRConjugateGradientMinimizer.h b/Framework/CurveFitting/inc/MantidCurveFitting/PRConjugateGradientMinimizer.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/ParDomain.h b/Framework/CurveFitting/inc/MantidCurveFitting/ParDomain.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/ParameterEstimator.h b/Framework/CurveFitting/inc/MantidCurveFitting/ParameterEstimator.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/PawleyFit.h b/Framework/CurveFitting/inc/MantidCurveFitting/PawleyFit.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/PeakParameterFunction.h b/Framework/CurveFitting/inc/MantidCurveFitting/PeakParameterFunction.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/PlotPeakByLogValue.h b/Framework/CurveFitting/inc/MantidCurveFitting/PlotPeakByLogValue.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/Polynomial.h b/Framework/CurveFitting/inc/MantidCurveFitting/Polynomial.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/ProductFunction.h b/Framework/CurveFitting/inc/MantidCurveFitting/ProductFunction.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/PseudoVoigt.h b/Framework/CurveFitting/inc/MantidCurveFitting/PseudoVoigt.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/RefinePowderInstrumentParameters.h b/Framework/CurveFitting/inc/MantidCurveFitting/RefinePowderInstrumentParameters.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/ReflectivityMulf.h b/Framework/CurveFitting/inc/MantidCurveFitting/ReflectivityMulf.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/SimpleChebfun.h b/Framework/CurveFitting/inc/MantidCurveFitting/SimpleChebfun.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/StaticKuboToyabeTimesGausDecay.h b/Framework/CurveFitting/inc/MantidCurveFitting/StaticKuboToyabeTimesGausDecay.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/SteepestDescentMinimizer.h b/Framework/CurveFitting/inc/MantidCurveFitting/SteepestDescentMinimizer.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/StretchExp.h b/Framework/CurveFitting/inc/MantidCurveFitting/StretchExp.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/ThermalNeutronBk2BkExpAlpha.h b/Framework/CurveFitting/inc/MantidCurveFitting/ThermalNeutronBk2BkExpAlpha.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/ThermalNeutronBk2BkExpConvPVoigt.h b/Framework/CurveFitting/inc/MantidCurveFitting/ThermalNeutronBk2BkExpConvPVoigt.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/ThermalNeutronBk2BkExpSigma.h b/Framework/CurveFitting/inc/MantidCurveFitting/ThermalNeutronBk2BkExpSigma.h
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diff --git a/Code/Mantid/Framework/CurveFitting/inc/MantidCurveFitting/ThermalNeutronDtoTOFFunction.h b/Framework/CurveFitting/inc/MantidCurveFitting/ThermalNeutronDtoTOFFunction.h
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diff --git a/Code/Mantid/Framework/DataHandling/inc/MantidDataHandling/SaveReflCustomAscii.h b/Framework/DataHandling/inc/MantidDataHandling/SaveReflCustomAscii.h
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diff --git a/Code/Mantid/Framework/DataHandling/inc/MantidDataHandling/SaveToSNSHistogramNexus.h b/Framework/DataHandling/inc/MantidDataHandling/SaveToSNSHistogramNexus.h
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diff --git a/Code/Mantid/Framework/DataHandling/inc/MantidDataHandling/SaveVTK.h b/Framework/DataHandling/inc/MantidDataHandling/SaveVTK.h
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diff --git a/Code/Mantid/Framework/DataHandling/inc/MantidDataHandling/UpdateInstrumentFromFile.h b/Framework/DataHandling/inc/MantidDataHandling/UpdateInstrumentFromFile.h
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diff --git a/Code/Mantid/Framework/DataHandling/src/AppendGeometryToSNSNexus.cpp b/Framework/DataHandling/src/AppendGeometryToSNSNexus.cpp
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diff --git a/Code/Mantid/Framework/DataHandling/src/LoadInstrumentFromRaw.cpp b/Framework/DataHandling/src/LoadInstrumentFromRaw.cpp
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diff --git a/Code/Mantid/Framework/DataHandling/src/LoadPDFgetNFile.cpp b/Framework/DataHandling/src/LoadPDFgetNFile.cpp
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diff --git a/Code/Mantid/Framework/DataHandling/src/LoadPreNexus.cpp b/Framework/DataHandling/src/LoadPreNexus.cpp
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diff --git a/Code/Mantid/Framework/DataHandling/src/LoadRawSpectrum0.cpp b/Framework/DataHandling/src/LoadRawSpectrum0.cpp
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diff --git a/Code/Mantid/Framework/DataHandling/src/LoadReflTBL.cpp b/Framework/DataHandling/src/LoadReflTBL.cpp
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diff --git a/Code/Mantid/Framework/DataHandling/src/LoadSINQFocus.cpp b/Framework/DataHandling/src/LoadSINQFocus.cpp
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diff --git a/Code/Mantid/Framework/DataHandling/src/LoadSampleDetailsFromRaw.cpp b/Framework/DataHandling/src/LoadSampleDetailsFromRaw.cpp
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diff --git a/Code/Mantid/Framework/DataHandling/src/LoadSavuTomoConfig.cpp b/Framework/DataHandling/src/LoadSavuTomoConfig.cpp
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diff --git a/Code/Mantid/Framework/DataHandling/src/LoadSpice2D.cpp b/Framework/DataHandling/src/LoadSpice2D.cpp
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diff --git a/Code/Mantid/Framework/DataHandling/src/LoadSpiceXML2DDet.cpp b/Framework/DataHandling/src/LoadSpiceXML2DDet.cpp
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diff --git a/Code/Mantid/Framework/DataHandling/src/LoadTOFRawNexus.cpp b/Framework/DataHandling/src/LoadTOFRawNexus.cpp
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diff --git a/Code/Mantid/Framework/DataHandling/src/LoadVulcanCalFile.cpp b/Framework/DataHandling/src/LoadVulcanCalFile.cpp
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diff --git a/Code/Mantid/Framework/Geometry/inc/MantidGeometry/Instrument/InstrumentDefinitionParser.h b/Framework/Geometry/inc/MantidGeometry/Instrument/InstrumentDefinitionParser.h
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diff --git a/Code/Mantid/Framework/Geometry/inc/MantidGeometry/Instrument/ObjCompAssembly.h b/Framework/Geometry/inc/MantidGeometry/Instrument/ObjCompAssembly.h
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diff --git a/Code/Mantid/Framework/Geometry/inc/MantidGeometry/Instrument/ParComponentFactory.h b/Framework/Geometry/inc/MantidGeometry/Instrument/ParComponentFactory.h
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diff --git a/Code/Mantid/Framework/Geometry/inc/MantidGeometry/Instrument/ParameterMap.h b/Framework/Geometry/inc/MantidGeometry/Instrument/ParameterMap.h
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diff --git a/Code/Mantid/Framework/Geometry/inc/MantidGeometry/Instrument/RectangularDetector.h b/Framework/Geometry/inc/MantidGeometry/Instrument/RectangularDetector.h
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diff --git a/Code/Mantid/Framework/Geometry/inc/MantidGeometry/Instrument/RectangularDetectorPixel.h b/Framework/Geometry/inc/MantidGeometry/Instrument/RectangularDetectorPixel.h
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diff --git a/Code/Mantid/Framework/Geometry/inc/MantidGeometry/Instrument/ReferenceFrame.h b/Framework/Geometry/inc/MantidGeometry/Instrument/ReferenceFrame.h
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diff --git a/Code/Mantid/Framework/Geometry/inc/MantidGeometry/Instrument/XMLInstrumentParameter.h b/Framework/Geometry/inc/MantidGeometry/Instrument/XMLInstrumentParameter.h
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diff --git a/Code/Mantid/Framework/Geometry/inc/MantidGeometry/MDGeometry/CompositeImplicitFunction.h b/Framework/Geometry/inc/MantidGeometry/MDGeometry/CompositeImplicitFunction.h
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diff --git a/Code/Mantid/Framework/Geometry/inc/MantidGeometry/MDGeometry/HKL.h b/Framework/Geometry/inc/MantidGeometry/MDGeometry/HKL.h
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diff --git a/Code/Mantid/Framework/Geometry/inc/MantidGeometry/MDGeometry/IMDDimension.h b/Framework/Geometry/inc/MantidGeometry/MDGeometry/IMDDimension.h
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diff --git a/Code/Mantid/Framework/Geometry/inc/MantidGeometry/MDGeometry/MDBoxImplicitFunction.h b/Framework/Geometry/inc/MantidGeometry/MDGeometry/MDBoxImplicitFunction.h
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diff --git a/Code/Mantid/Framework/Geometry/inc/MantidGeometry/MDGeometry/MDDimensionExtents.h b/Framework/Geometry/inc/MantidGeometry/MDGeometry/MDDimensionExtents.h
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diff --git a/Code/Mantid/Framework/Geometry/inc/MantidGeometry/MDGeometry/MDFrame.h b/Framework/Geometry/inc/MantidGeometry/MDGeometry/MDFrame.h
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diff --git a/Code/Mantid/Framework/Geometry/inc/MantidGeometry/MDGeometry/MDGeometryXMLBuilder.h b/Framework/Geometry/inc/MantidGeometry/MDGeometry/MDGeometryXMLBuilder.h
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diff --git a/Code/Mantid/Framework/Geometry/inc/MantidGeometry/MDGeometry/MDHistoDimension.h b/Framework/Geometry/inc/MantidGeometry/MDGeometry/MDHistoDimension.h
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diff --git a/Code/Mantid/Framework/Geometry/inc/MantidGeometry/MDGeometry/MDImplicitFunction.h b/Framework/Geometry/inc/MantidGeometry/MDGeometry/MDImplicitFunction.h
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diff --git a/Code/Mantid/Framework/Geometry/inc/MantidGeometry/MDGeometry/MDTypes.h b/Framework/Geometry/inc/MantidGeometry/MDGeometry/MDTypes.h
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diff --git a/Code/Mantid/Framework/Geometry/inc/MantidGeometry/MDGeometry/MDWorkspaceConstants.h b/Framework/Geometry/inc/MantidGeometry/MDGeometry/MDWorkspaceConstants.h
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diff --git a/Code/Mantid/Framework/Geometry/inc/MantidGeometry/MDGeometry/QLab.h b/Framework/Geometry/inc/MantidGeometry/MDGeometry/QLab.h
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diff --git a/Code/Mantid/Framework/Geometry/inc/MantidGeometry/Math/MapSupport.h b/Framework/Geometry/inc/MantidGeometry/Math/MapSupport.h
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diff --git a/Code/Mantid/Framework/Geometry/inc/MantidGeometry/Math/Triple.h b/Framework/Geometry/inc/MantidGeometry/Math/Triple.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/Math/Distributions/ChebyshevPolynomial.h b/Framework/Kernel/inc/MantidKernel/Math/Distributions/ChebyshevPolynomial.h
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rename to Framework/Kernel/inc/MantidKernel/Math/Distributions/ChebyshevPolynomial.h
diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/Math/Distributions/ChebyshevSeries.h b/Framework/Kernel/inc/MantidKernel/Math/Distributions/ChebyshevSeries.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/Math/Distributions/HermitePolynomials.h b/Framework/Kernel/inc/MantidKernel/Math/Distributions/HermitePolynomials.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/Math/Optimization/SLSQPMinimizer.h b/Framework/Kernel/inc/MantidKernel/Math/Optimization/SLSQPMinimizer.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/Matrix.h b/Framework/Kernel/inc/MantidKernel/Matrix.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/Memory.h b/Framework/Kernel/inc/MantidKernel/Memory.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/MersenneTwister.h b/Framework/Kernel/inc/MantidKernel/MersenneTwister.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/MultiFileNameParser.h b/Framework/Kernel/inc/MantidKernel/MultiFileNameParser.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/NDPseudoRandomNumberGenerator.h b/Framework/Kernel/inc/MantidKernel/NDPseudoRandomNumberGenerator.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/NetworkProxy.h b/Framework/Kernel/inc/MantidKernel/NetworkProxy.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/ParaViewVersion.h b/Framework/Kernel/inc/MantidKernel/ParaViewVersion.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/PocoVersion.h.in b/Framework/Kernel/inc/MantidKernel/PocoVersion.h.in
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/PropertyHistory.h b/Framework/Kernel/inc/MantidKernel/PropertyHistory.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/ProxyInfo.h b/Framework/Kernel/inc/MantidKernel/ProxyInfo.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/PseudoRandomNumberGenerator.h b/Framework/Kernel/inc/MantidKernel/PseudoRandomNumberGenerator.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/QuasiRandomNumberSequence.h b/Framework/Kernel/inc/MantidKernel/QuasiRandomNumberSequence.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/Quat.h b/Framework/Kernel/inc/MantidKernel/Quat.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/ReadLock.h b/Framework/Kernel/inc/MantidKernel/ReadLock.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/RebinParamsValidator.h b/Framework/Kernel/inc/MantidKernel/RebinParamsValidator.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/RegexStrings.h b/Framework/Kernel/inc/MantidKernel/RegexStrings.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/RegistrationHelper.h b/Framework/Kernel/inc/MantidKernel/RegistrationHelper.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/RemoteJobManager.h b/Framework/Kernel/inc/MantidKernel/RemoteJobManager.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/SobolSequence.h b/Framework/Kernel/inc/MantidKernel/SobolSequence.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/SpecialCoordinateSystem.h b/Framework/Kernel/inc/MantidKernel/SpecialCoordinateSystem.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/StartsWithValidator.h b/Framework/Kernel/inc/MantidKernel/StartsWithValidator.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/Statistics.h b/Framework/Kernel/inc/MantidKernel/Statistics.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/StdoutChannel.h b/Framework/Kernel/inc/MantidKernel/StdoutChannel.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/Task.h b/Framework/Kernel/inc/MantidKernel/Task.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/ThreadSafeLogStream.h b/Framework/Kernel/inc/MantidKernel/ThreadSafeLogStream.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/TimeSeriesProperty.h b/Framework/Kernel/inc/MantidKernel/TimeSeriesProperty.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/Timer.h b/Framework/Kernel/inc/MantidKernel/Timer.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/WriteLock.h b/Framework/Kernel/inc/MantidKernel/WriteLock.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/XMLInstantiator.h b/Framework/Kernel/inc/MantidKernel/XMLInstantiator.h
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diff --git a/Code/Mantid/Framework/Kernel/inc/MantidKernel/cow_ptr.h b/Framework/Kernel/inc/MantidKernel/cow_ptr.h
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diff --git a/Code/Mantid/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiDetectorFactory.h b/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiDetectorFactory.h
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diff --git a/Code/Mantid/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiHeliumDetector.h b/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiHeliumDetector.h
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rename to Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiHeliumDetector.h
diff --git a/Code/Mantid/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiInstrumentAdapter.h b/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiInstrumentAdapter.h
similarity index 100%
rename from Code/Mantid/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiInstrumentAdapter.h
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diff --git a/Code/Mantid/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiMockInstrumentHelpers.h b/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiMockInstrumentHelpers.h
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diff --git a/Code/Mantid/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiPeak.h b/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiPeak.h
similarity index 100%
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diff --git a/Code/Mantid/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiPeakCollection.h b/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiPeakCollection.h
similarity index 100%
rename from Code/Mantid/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiPeakCollection.h
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diff --git a/Code/Mantid/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiResidualCorrelationCore.h b/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiResidualCorrelationCore.h
similarity index 100%
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diff --git a/Code/Mantid/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiSourceSpectrum.h b/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiSourceSpectrum.h
similarity index 100%
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diff --git a/Code/Mantid/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiSpectrumConstantBackground.h b/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiSpectrumConstantBackground.h
similarity index 100%
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diff --git a/Code/Mantid/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiSpectrumDomainFunction.h b/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiSpectrumDomainFunction.h
similarity index 100%
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diff --git a/Code/Mantid/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiSpectrumLinearBackground.h b/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiSpectrumLinearBackground.h
similarity index 100%
rename from Code/Mantid/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiSpectrumLinearBackground.h
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diff --git a/Code/Mantid/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiSpectrumPawleyFunction.h b/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiSpectrumPawleyFunction.h
similarity index 100%
rename from Code/Mantid/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiSpectrumPawleyFunction.h
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diff --git a/Code/Mantid/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiTimeTransformer.h b/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiTimeTransformer.h
similarity index 100%
rename from Code/Mantid/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/PoldiTimeTransformer.h
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diff --git a/Code/Mantid/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/UncertainValue.h b/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/UncertainValue.h
similarity index 100%
rename from Code/Mantid/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/UncertainValue.h
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diff --git a/Code/Mantid/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/UncertainValueIO.h b/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/UncertainValueIO.h
similarity index 100%
rename from Code/Mantid/Framework/SINQ/inc/MantidSINQ/PoldiUtilities/UncertainValueIO.h
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diff --git a/Code/Mantid/Framework/SINQ/inc/MantidSINQ/PrecompiledHeader.h b/Framework/SINQ/inc/MantidSINQ/PrecompiledHeader.h
similarity index 100%
rename from Code/Mantid/Framework/SINQ/inc/MantidSINQ/PrecompiledHeader.h
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diff --git a/Code/Mantid/Framework/SINQ/inc/MantidSINQ/ProjectMD.h b/Framework/SINQ/inc/MantidSINQ/ProjectMD.h
similarity index 100%
rename from Code/Mantid/Framework/SINQ/inc/MantidSINQ/ProjectMD.h
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diff --git a/Code/Mantid/Framework/SINQ/inc/MantidSINQ/SINQHMListener.h b/Framework/SINQ/inc/MantidSINQ/SINQHMListener.h
similarity index 100%
rename from Code/Mantid/Framework/SINQ/inc/MantidSINQ/SINQHMListener.h
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diff --git a/Code/Mantid/Framework/SINQ/inc/MantidSINQ/SINQTranspose3D.h b/Framework/SINQ/inc/MantidSINQ/SINQTranspose3D.h
similarity index 100%
rename from Code/Mantid/Framework/SINQ/inc/MantidSINQ/SINQTranspose3D.h
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diff --git a/Code/Mantid/Framework/SINQ/inc/MantidSINQ/SliceMDHisto.h b/Framework/SINQ/inc/MantidSINQ/SliceMDHisto.h
similarity index 100%
rename from Code/Mantid/Framework/SINQ/inc/MantidSINQ/SliceMDHisto.h
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diff --git a/Code/Mantid/Framework/SINQ/src/InvertMDDim.cpp b/Framework/SINQ/src/InvertMDDim.cpp
similarity index 100%
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rename to Framework/SINQ/src/InvertMDDim.cpp
diff --git a/Code/Mantid/Framework/SINQ/src/LoadFlexiNexus.cpp b/Framework/SINQ/src/LoadFlexiNexus.cpp
similarity index 100%
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diff --git a/Code/Mantid/Framework/SINQ/src/MDHistoToWorkspace2D.cpp b/Framework/SINQ/src/MDHistoToWorkspace2D.cpp
similarity index 100%
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiAnalyseResiduals.cpp b/Framework/SINQ/src/PoldiAnalyseResiduals.cpp
similarity index 100%
rename from Code/Mantid/Framework/SINQ/src/PoldiAnalyseResiduals.cpp
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiAutoCorrelation5.cpp b/Framework/SINQ/src/PoldiAutoCorrelation5.cpp
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rename to Framework/SINQ/src/PoldiAutoCorrelation5.cpp
diff --git a/Code/Mantid/Framework/SINQ/src/PoldiCreatePeaksFromCell.cpp b/Framework/SINQ/src/PoldiCreatePeaksFromCell.cpp
similarity index 100%
rename from Code/Mantid/Framework/SINQ/src/PoldiCreatePeaksFromCell.cpp
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiFitPeaks1D.cpp b/Framework/SINQ/src/PoldiFitPeaks1D.cpp
similarity index 100%
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiFitPeaks1D2.cpp b/Framework/SINQ/src/PoldiFitPeaks1D2.cpp
similarity index 100%
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiFitPeaks2D.cpp b/Framework/SINQ/src/PoldiFitPeaks2D.cpp
similarity index 100%
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiIndexKnownCompounds.cpp b/Framework/SINQ/src/PoldiIndexKnownCompounds.cpp
similarity index 100%
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiPeakSearch.cpp b/Framework/SINQ/src/PoldiPeakSearch.cpp
similarity index 100%
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiPeakSummary.cpp b/Framework/SINQ/src/PoldiPeakSummary.cpp
similarity index 100%
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiTruncateData.cpp b/Framework/SINQ/src/PoldiTruncateData.cpp
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiUtilities/IPoldiFunction1D.cpp b/Framework/SINQ/src/PoldiUtilities/IPoldiFunction1D.cpp
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiUtilities/MillerIndices.cpp b/Framework/SINQ/src/PoldiUtilities/MillerIndices.cpp
similarity index 100%
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiUtilities/Poldi2DFunction.cpp b/Framework/SINQ/src/PoldiUtilities/Poldi2DFunction.cpp
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiUtilities/PoldiAutoCorrelationCore.cpp b/Framework/SINQ/src/PoldiUtilities/PoldiAutoCorrelationCore.cpp
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiUtilities/PoldiBasicChopper.cpp b/Framework/SINQ/src/PoldiUtilities/PoldiBasicChopper.cpp
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiUtilities/PoldiChopperFactory.cpp b/Framework/SINQ/src/PoldiUtilities/PoldiChopperFactory.cpp
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiUtilities/PoldiConversions.cpp b/Framework/SINQ/src/PoldiUtilities/PoldiConversions.cpp
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiUtilities/PoldiDGrid.cpp b/Framework/SINQ/src/PoldiUtilities/PoldiDGrid.cpp
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiUtilities/PoldiDeadWireDecorator.cpp b/Framework/SINQ/src/PoldiUtilities/PoldiDeadWireDecorator.cpp
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiUtilities/PoldiDetectorDecorator.cpp b/Framework/SINQ/src/PoldiUtilities/PoldiDetectorDecorator.cpp
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiUtilities/PoldiDetectorFactory.cpp b/Framework/SINQ/src/PoldiUtilities/PoldiDetectorFactory.cpp
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiUtilities/PoldiHeliumDetector.cpp b/Framework/SINQ/src/PoldiUtilities/PoldiHeliumDetector.cpp
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiUtilities/PoldiInstrumentAdapter.cpp b/Framework/SINQ/src/PoldiUtilities/PoldiInstrumentAdapter.cpp
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiUtilities/PoldiPeak.cpp b/Framework/SINQ/src/PoldiUtilities/PoldiPeak.cpp
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiUtilities/PoldiPeakCollection.cpp b/Framework/SINQ/src/PoldiUtilities/PoldiPeakCollection.cpp
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiUtilities/PoldiResidualCorrelationCore.cpp b/Framework/SINQ/src/PoldiUtilities/PoldiResidualCorrelationCore.cpp
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiUtilities/PoldiSourceSpectrum.cpp b/Framework/SINQ/src/PoldiUtilities/PoldiSourceSpectrum.cpp
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiUtilities/PoldiSpectrumConstantBackground.cpp b/Framework/SINQ/src/PoldiUtilities/PoldiSpectrumConstantBackground.cpp
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiUtilities/PoldiSpectrumDomainFunction.cpp b/Framework/SINQ/src/PoldiUtilities/PoldiSpectrumDomainFunction.cpp
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiUtilities/PoldiSpectrumLinearBackground.cpp b/Framework/SINQ/src/PoldiUtilities/PoldiSpectrumLinearBackground.cpp
similarity index 100%
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiUtilities/PoldiSpectrumPawleyFunction.cpp b/Framework/SINQ/src/PoldiUtilities/PoldiSpectrumPawleyFunction.cpp
similarity index 100%
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiUtilities/PoldiTimeTransformer.cpp b/Framework/SINQ/src/PoldiUtilities/PoldiTimeTransformer.cpp
similarity index 100%
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diff --git a/Code/Mantid/Framework/SINQ/src/PoldiUtilities/UncertainValue.cpp b/Framework/SINQ/src/PoldiUtilities/UncertainValue.cpp
similarity index 100%
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diff --git a/Code/Mantid/Framework/SINQ/src/ProjectMD.cpp b/Framework/SINQ/src/ProjectMD.cpp
similarity index 100%
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rename to Framework/SINQ/src/ProjectMD.cpp
diff --git a/Code/Mantid/Framework/SINQ/src/SINQHMListener.cpp b/Framework/SINQ/src/SINQHMListener.cpp
similarity index 100%
rename from Code/Mantid/Framework/SINQ/src/SINQHMListener.cpp
rename to Framework/SINQ/src/SINQHMListener.cpp
diff --git a/Code/Mantid/Framework/SINQ/src/SINQTranspose3D.cpp b/Framework/SINQ/src/SINQTranspose3D.cpp
similarity index 100%
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diff --git a/Code/Mantid/Framework/SINQ/src/SliceMDHisto.cpp b/Framework/SINQ/src/SliceMDHisto.cpp
similarity index 100%
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rename to Framework/SINQ/src/SliceMDHisto.cpp
diff --git a/Code/Mantid/Framework/SINQ/test/CMakeLists.txt b/Framework/SINQ/test/CMakeLists.txt
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diff --git a/Code/Mantid/Framework/SINQ/test/InvertMDDimTest.h b/Framework/SINQ/test/InvertMDDimTest.h
similarity index 100%
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diff --git a/Code/Mantid/Framework/SINQ/test/LoadFlexiNexusTest.h b/Framework/SINQ/test/LoadFlexiNexusTest.h
similarity index 100%
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diff --git a/Code/Mantid/Framework/SINQ/test/MDHistoToWorkspace2DTest.h b/Framework/SINQ/test/MDHistoToWorkspace2DTest.h
similarity index 100%
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Tomography/TomoToolConfigAstra.ui b/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Tomography/TomoToolConfigAstra.ui
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Tomography/TomoToolConfigDialog.h b/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Tomography/TomoToolConfigDialog.h
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Tomography/TomoToolConfigSavu.ui b/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Tomography/TomoToolConfigSavu.ui
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Tomography/TomoToolConfigTomoPy.ui b/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Tomography/TomoToolConfigTomoPy.ui
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Tomography/TomographyIfaceModel.h b/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Tomography/TomographyIfaceModel.h
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Tomography/TomographyIfacePresenter.h b/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Tomography/TomographyIfacePresenter.h
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Tomography/TomographyIfaceQtGUI.ui b/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Tomography/TomographyIfaceQtGUI.ui
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Tomography/TomographyIfaceQtTabRun.ui b/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Tomography/TomographyIfaceQtTabRun.ui
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Tomography/TomographyIfaceViewQtGUI.h b/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Tomography/TomographyIfaceViewQtGUI.h
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Tomography/ToolConfigAstraToolbox.h b/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Tomography/ToolConfigAstraToolbox.h
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Tomography/ToolConfigCustom.h b/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Tomography/ToolConfigCustom.h
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Tomography/ToolConfigTomoPy.h b/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Tomography/ToolConfigTomoPy.h
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Updateable.h b/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/Updateable.h
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/deltaECalc.h b/MantidQt/CustomInterfaces/inc/MantidQtCustomInterfaces/deltaECalc.h
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/src/DataComparison.cpp b/MantidQt/CustomInterfaces/src/DataComparison.cpp
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/src/Homer.cpp b/MantidQt/CustomInterfaces/src/Homer.cpp
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/src/Indirect/IndirectCorrections.cpp b/MantidQt/CustomInterfaces/src/Indirect/IndirectCorrections.cpp
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/src/Indirect/IndirectLoadILL.cpp b/MantidQt/CustomInterfaces/src/Indirect/IndirectLoadILL.cpp
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/src/Indirect/IndirectTransmissionCalc.cpp b/MantidQt/CustomInterfaces/src/Indirect/IndirectTransmissionCalc.cpp
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/src/MantidEV.cpp b/MantidQt/CustomInterfaces/src/MantidEV.cpp
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/src/Muon/ALCBaselineModellingModel.cpp b/MantidQt/CustomInterfaces/src/Muon/ALCBaselineModellingModel.cpp
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/src/Muon/IO_MuonGrouping.cpp b/MantidQt/CustomInterfaces/src/Muon/IO_MuonGrouping.cpp
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/src/Muon/MuonAnalysis.cpp b/MantidQt/CustomInterfaces/src/Muon/MuonAnalysis.cpp
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/src/QReflTableModel.cpp b/MantidQt/CustomInterfaces/src/QReflTableModel.cpp
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/src/ReflCatalogSearcher.cpp b/MantidQt/CustomInterfaces/src/ReflCatalogSearcher.cpp
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/src/ReflMainViewPresenter.cpp b/MantidQt/CustomInterfaces/src/ReflMainViewPresenter.cpp
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/src/SANSAddFiles.cpp b/MantidQt/CustomInterfaces/src/SANSAddFiles.cpp
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/src/Tomography/SavuConfigDialog.cpp b/MantidQt/CustomInterfaces/src/Tomography/SavuConfigDialog.cpp
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/test/IO_MuonGroupingTest.h b/MantidQt/CustomInterfaces/test/IO_MuonGroupingTest.h
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diff --git a/Code/Mantid/MantidQt/CustomInterfaces/test/ReflGenerateNotebookTest.h b/MantidQt/CustomInterfaces/test/ReflGenerateNotebookTest.h
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diff --git a/Code/Mantid/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/PropertyHandler.h b/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/PropertyHandler.h
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diff --git a/Code/Mantid/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/RangeSelector.h b/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/RangeSelector.h
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diff --git a/Code/Mantid/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/RenameParDialog.h b/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/RenameParDialog.h
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diff --git a/Code/Mantid/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/SafeQwtPlot.h b/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/SafeQwtPlot.h
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diff --git a/Code/Mantid/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/SaveWorkspaces.h b/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/SaveWorkspaces.h
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diff --git a/Code/Mantid/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/ScriptEditor.h b/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/ScriptEditor.h
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diff --git a/Code/Mantid/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/SelectFunctionDialog.h b/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/SelectFunctionDialog.h
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diff --git a/Code/Mantid/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/SelectFunctionDialog.ui b/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/SelectFunctionDialog.ui
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diff --git a/Code/Mantid/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/SelectWorkspacesDialog.h b/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/SelectWorkspacesDialog.h
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diff --git a/Code/Mantid/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/SequentialFitDialog.h b/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/SequentialFitDialog.h
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diff --git a/Code/Mantid/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/SequentialFitDialog.ui b/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/SequentialFitDialog.ui
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diff --git a/Code/Mantid/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/SlicingAlgorithmDialog.h b/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/SlicingAlgorithmDialog.h
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diff --git a/Code/Mantid/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/SlicingAlgorithmDialog.ui b/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/SlicingAlgorithmDialog.ui
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diff --git a/Code/Mantid/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/SlitCalculator.h b/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/SlitCalculator.h
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diff --git a/Code/Mantid/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/StringDialogEditor.h b/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/StringDialogEditor.h
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diff --git a/Code/Mantid/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/StringEditorFactory.h b/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/StringEditorFactory.h
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diff --git a/Code/Mantid/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/UserFunctionDialog.h b/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/UserFunctionDialog.h
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diff --git a/Code/Mantid/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/WidgetDllOption.h b/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/WidgetDllOption.h
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diff --git a/Code/Mantid/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/WorkspaceEditorFactory.h b/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/WorkspaceEditorFactory.h
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diff --git a/Code/Mantid/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/WorkspaceSelector.h b/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/WorkspaceSelector.h
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diff --git a/Code/Mantid/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/pqHelpWindow.h b/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/pqHelpWindow.h
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diff --git a/Code/Mantid/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/pythonCalc.h b/MantidQt/MantidWidgets/inc/MantidQtMantidWidgets/pythonCalc.h
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diff --git a/Code/Mantid/MantidQt/MantidWidgets/src/AlgorithmSelectorWidget.cpp b/MantidQt/MantidWidgets/src/AlgorithmSelectorWidget.cpp
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diff --git a/Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksPresenter.h b/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksPresenter.h
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rename from Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksPresenter.h
rename to MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksPresenter.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksTableColumnsDialog.h b/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksTableColumnsDialog.h
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rename from Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksTableColumnsDialog.h
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diff --git a/Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksTableColumnsDialog.ui b/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksTableColumnsDialog.ui
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rename from Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksTableColumnsDialog.ui
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diff --git a/Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksViewer.h b/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksViewer.h
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rename from Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksViewer.h
rename to MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksViewer.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksViewerOverlayDialog.h b/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksViewerOverlayDialog.h
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rename from Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksViewerOverlayDialog.h
rename to MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksViewerOverlayDialog.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksViewerOverlayDialog.ui b/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksViewerOverlayDialog.ui
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rename from Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksViewerOverlayDialog.ui
rename to MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksViewerOverlayDialog.ui
diff --git a/Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksWorkspaceWidget.h b/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksWorkspaceWidget.h
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rename from Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksWorkspaceWidget.h
rename to MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksWorkspaceWidget.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksWorkspaceWidget.ui b/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksWorkspaceWidget.ui
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rename from Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PeaksWorkspaceWidget.ui
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diff --git a/Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PhysicalCrossPeak.h b/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PhysicalCrossPeak.h
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rename from Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PhysicalCrossPeak.h
rename to MantidQt/SliceViewer/inc/MantidQtSliceViewer/PhysicalCrossPeak.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PhysicalSphericalPeak.h b/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PhysicalSphericalPeak.h
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rename from Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/PhysicalSphericalPeak.h
rename to MantidQt/SliceViewer/inc/MantidQtSliceViewer/PhysicalSphericalPeak.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/ProxyCompositePeaksPresenter.h b/MantidQt/SliceViewer/inc/MantidQtSliceViewer/ProxyCompositePeaksPresenter.h
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rename from Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/ProxyCompositePeaksPresenter.h
rename to MantidQt/SliceViewer/inc/MantidQtSliceViewer/ProxyCompositePeaksPresenter.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/QPeaksTableModel.h b/MantidQt/SliceViewer/inc/MantidQtSliceViewer/QPeaksTableModel.h
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rename from Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/QPeaksTableModel.h
rename to MantidQt/SliceViewer/inc/MantidQtSliceViewer/QPeaksTableModel.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/QScienceSpinBox.h b/MantidQt/SliceViewer/inc/MantidQtSliceViewer/QScienceSpinBox.h
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rename from Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/QScienceSpinBox.h
rename to MantidQt/SliceViewer/inc/MantidQtSliceViewer/QScienceSpinBox.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/SliceViewer.h b/MantidQt/SliceViewer/inc/MantidQtSliceViewer/SliceViewer.h
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rename from Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/SliceViewer.h
rename to MantidQt/SliceViewer/inc/MantidQtSliceViewer/SliceViewer.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/SliceViewer.ui b/MantidQt/SliceViewer/inc/MantidQtSliceViewer/SliceViewer.ui
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rename from Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/SliceViewer.ui
rename to MantidQt/SliceViewer/inc/MantidQtSliceViewer/SliceViewer.ui
diff --git a/Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/SliceViewerWindow.h b/MantidQt/SliceViewer/inc/MantidQtSliceViewer/SliceViewerWindow.h
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rename from Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/SliceViewerWindow.h
rename to MantidQt/SliceViewer/inc/MantidQtSliceViewer/SliceViewerWindow.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/SnapToGridDialog.h b/MantidQt/SliceViewer/inc/MantidQtSliceViewer/SnapToGridDialog.h
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rename from Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/SnapToGridDialog.h
rename to MantidQt/SliceViewer/inc/MantidQtSliceViewer/SnapToGridDialog.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/SnapToGridDialog.ui b/MantidQt/SliceViewer/inc/MantidQtSliceViewer/SnapToGridDialog.ui
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rename from Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/SnapToGridDialog.ui
rename to MantidQt/SliceViewer/inc/MantidQtSliceViewer/SnapToGridDialog.ui
diff --git a/Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/UpdateableOnDemand.h b/MantidQt/SliceViewer/inc/MantidQtSliceViewer/UpdateableOnDemand.h
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rename from Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/UpdateableOnDemand.h
rename to MantidQt/SliceViewer/inc/MantidQtSliceViewer/UpdateableOnDemand.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/XYLimitsDialog.h b/MantidQt/SliceViewer/inc/MantidQtSliceViewer/XYLimitsDialog.h
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rename from Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/XYLimitsDialog.h
rename to MantidQt/SliceViewer/inc/MantidQtSliceViewer/XYLimitsDialog.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/XYLimitsDialog.ui b/MantidQt/SliceViewer/inc/MantidQtSliceViewer/XYLimitsDialog.ui
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rename from Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/XYLimitsDialog.ui
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diff --git a/Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/ZoomableOnDemand.h b/MantidQt/SliceViewer/inc/MantidQtSliceViewer/ZoomableOnDemand.h
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rename from Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/ZoomableOnDemand.h
rename to MantidQt/SliceViewer/inc/MantidQtSliceViewer/ZoomableOnDemand.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/ZoomablePeaksView.h b/MantidQt/SliceViewer/inc/MantidQtSliceViewer/ZoomablePeaksView.h
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rename from Code/Mantid/MantidQt/SliceViewer/inc/MantidQtSliceViewer/ZoomablePeaksView.h
rename to MantidQt/SliceViewer/inc/MantidQtSliceViewer/ZoomablePeaksView.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/src/ColorBarWidget.cpp b/MantidQt/SliceViewer/src/ColorBarWidget.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/ColorBarWidget.cpp
rename to MantidQt/SliceViewer/src/ColorBarWidget.cpp
diff --git a/Code/Mantid/MantidQt/SliceViewer/src/CompositePeaksPresenter.cpp b/MantidQt/SliceViewer/src/CompositePeaksPresenter.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/CompositePeaksPresenter.cpp
rename to MantidQt/SliceViewer/src/CompositePeaksPresenter.cpp
diff --git a/Code/Mantid/MantidQt/SliceViewer/src/ConcretePeaksPresenter.cpp b/MantidQt/SliceViewer/src/ConcretePeaksPresenter.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/ConcretePeaksPresenter.cpp
rename to MantidQt/SliceViewer/src/ConcretePeaksPresenter.cpp
diff --git a/Code/Mantid/MantidQt/SliceViewer/src/CustomTools.cpp b/MantidQt/SliceViewer/src/CustomTools.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/CustomTools.cpp
rename to MantidQt/SliceViewer/src/CustomTools.cpp
diff --git a/Code/Mantid/MantidQt/SliceViewer/src/DimensionSliceWidget.cpp b/MantidQt/SliceViewer/src/DimensionSliceWidget.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/DimensionSliceWidget.cpp
rename to MantidQt/SliceViewer/src/DimensionSliceWidget.cpp
diff --git a/Code/Mantid/MantidQt/SliceViewer/src/LineOverlay.cpp b/MantidQt/SliceViewer/src/LineOverlay.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/LineOverlay.cpp
rename to MantidQt/SliceViewer/src/LineOverlay.cpp
diff --git a/Code/Mantid/MantidQt/SliceViewer/src/LinePlotOptions.cpp b/MantidQt/SliceViewer/src/LinePlotOptions.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/LinePlotOptions.cpp
rename to MantidQt/SliceViewer/src/LinePlotOptions.cpp
diff --git a/Code/Mantid/MantidQt/SliceViewer/src/LineViewer.cpp b/MantidQt/SliceViewer/src/LineViewer.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/LineViewer.cpp
rename to MantidQt/SliceViewer/src/LineViewer.cpp
diff --git a/Code/Mantid/MantidQt/SliceViewer/src/PeakBoundingBox.cpp b/MantidQt/SliceViewer/src/PeakBoundingBox.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/PeakBoundingBox.cpp
rename to MantidQt/SliceViewer/src/PeakBoundingBox.cpp
diff --git a/Code/Mantid/MantidQt/SliceViewer/src/PeakOverlayInteractive.cpp b/MantidQt/SliceViewer/src/PeakOverlayInteractive.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/PeakOverlayInteractive.cpp
rename to MantidQt/SliceViewer/src/PeakOverlayInteractive.cpp
diff --git a/Code/Mantid/MantidQt/SliceViewer/src/PeakOverlayMultiCross.cpp b/MantidQt/SliceViewer/src/PeakOverlayMultiCross.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/PeakOverlayMultiCross.cpp
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diff --git a/Code/Mantid/MantidQt/SliceViewer/src/PeakOverlayMultiCrossFactory.cpp b/MantidQt/SliceViewer/src/PeakOverlayMultiCrossFactory.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/PeakOverlayMultiCrossFactory.cpp
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diff --git a/Code/Mantid/MantidQt/SliceViewer/src/PeakOverlayMultiSphere.cpp b/MantidQt/SliceViewer/src/PeakOverlayMultiSphere.cpp
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diff --git a/Code/Mantid/MantidQt/SliceViewer/src/PeakOverlayMultiSphereFactory.cpp b/MantidQt/SliceViewer/src/PeakOverlayMultiSphereFactory.cpp
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diff --git a/Code/Mantid/MantidQt/SliceViewer/src/PeakOverlayViewFactoryBase.cpp b/MantidQt/SliceViewer/src/PeakOverlayViewFactoryBase.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/PeakOverlayViewFactoryBase.cpp
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diff --git a/Code/Mantid/MantidQt/SliceViewer/src/PeakOverlayViewFactorySelector.cpp b/MantidQt/SliceViewer/src/PeakOverlayViewFactorySelector.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/PeakOverlayViewFactorySelector.cpp
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diff --git a/Code/Mantid/MantidQt/SliceViewer/src/PeakPalette.cpp b/MantidQt/SliceViewer/src/PeakPalette.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/PeakPalette.cpp
rename to MantidQt/SliceViewer/src/PeakPalette.cpp
diff --git a/Code/Mantid/MantidQt/SliceViewer/src/PeaksTableColumnsDialog.cpp b/MantidQt/SliceViewer/src/PeaksTableColumnsDialog.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/PeaksTableColumnsDialog.cpp
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diff --git a/Code/Mantid/MantidQt/SliceViewer/src/PeaksViewer.cpp b/MantidQt/SliceViewer/src/PeaksViewer.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/PeaksViewer.cpp
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diff --git a/Code/Mantid/MantidQt/SliceViewer/src/PeaksViewerOverlayDialog.cpp b/MantidQt/SliceViewer/src/PeaksViewerOverlayDialog.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/PeaksViewerOverlayDialog.cpp
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diff --git a/Code/Mantid/MantidQt/SliceViewer/src/PeaksWorkspaceWidget.cpp b/MantidQt/SliceViewer/src/PeaksWorkspaceWidget.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/PeaksWorkspaceWidget.cpp
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diff --git a/Code/Mantid/MantidQt/SliceViewer/src/PhysicalCrossPeak.cpp b/MantidQt/SliceViewer/src/PhysicalCrossPeak.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/PhysicalCrossPeak.cpp
rename to MantidQt/SliceViewer/src/PhysicalCrossPeak.cpp
diff --git a/Code/Mantid/MantidQt/SliceViewer/src/PhysicalSphericalPeak.cpp b/MantidQt/SliceViewer/src/PhysicalSphericalPeak.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/PhysicalSphericalPeak.cpp
rename to MantidQt/SliceViewer/src/PhysicalSphericalPeak.cpp
diff --git a/Code/Mantid/MantidQt/SliceViewer/src/ProxyCompositePeaksPresenter.cpp b/MantidQt/SliceViewer/src/ProxyCompositePeaksPresenter.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/ProxyCompositePeaksPresenter.cpp
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diff --git a/Code/Mantid/MantidQt/SliceViewer/src/QPeaksTableModel.cpp b/MantidQt/SliceViewer/src/QPeaksTableModel.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/QPeaksTableModel.cpp
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diff --git a/Code/Mantid/MantidQt/SliceViewer/src/QScienceSpinBox.cpp b/MantidQt/SliceViewer/src/QScienceSpinBox.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/QScienceSpinBox.cpp
rename to MantidQt/SliceViewer/src/QScienceSpinBox.cpp
diff --git a/Code/Mantid/MantidQt/SliceViewer/src/SliceViewer.cpp b/MantidQt/SliceViewer/src/SliceViewer.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/SliceViewer.cpp
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diff --git a/Code/Mantid/MantidQt/SliceViewer/src/SliceViewerWindow.cpp b/MantidQt/SliceViewer/src/SliceViewerWindow.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/SliceViewerWindow.cpp
rename to MantidQt/SliceViewer/src/SliceViewerWindow.cpp
diff --git a/Code/Mantid/MantidQt/SliceViewer/src/SnapToGridDialog.cpp b/MantidQt/SliceViewer/src/SnapToGridDialog.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/SnapToGridDialog.cpp
rename to MantidQt/SliceViewer/src/SnapToGridDialog.cpp
diff --git a/Code/Mantid/MantidQt/SliceViewer/src/XYLimitsDialog.cpp b/MantidQt/SliceViewer/src/XYLimitsDialog.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/XYLimitsDialog.cpp
rename to MantidQt/SliceViewer/src/XYLimitsDialog.cpp
diff --git a/Code/Mantid/MantidQt/SliceViewer/src/main_ColorBarWidgetDemo.cpp b/MantidQt/SliceViewer/src/main_ColorBarWidgetDemo.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/main_ColorBarWidgetDemo.cpp
rename to MantidQt/SliceViewer/src/main_ColorBarWidgetDemo.cpp
diff --git a/Code/Mantid/MantidQt/SliceViewer/src/main_LineViewerDemo.cpp b/MantidQt/SliceViewer/src/main_LineViewerDemo.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/main_LineViewerDemo.cpp
rename to MantidQt/SliceViewer/src/main_LineViewerDemo.cpp
diff --git a/Code/Mantid/MantidQt/SliceViewer/src/main_SliceViewerDemo.cpp b/MantidQt/SliceViewer/src/main_SliceViewerDemo.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/main_SliceViewerDemo.cpp
rename to MantidQt/SliceViewer/src/main_SliceViewerDemo.cpp
diff --git a/Code/Mantid/MantidQt/SliceViewer/src/main_SliceViewerWindowDemo.cpp b/MantidQt/SliceViewer/src/main_SliceViewerWindowDemo.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/main_SliceViewerWindowDemo.cpp
rename to MantidQt/SliceViewer/src/main_SliceViewerWindowDemo.cpp
diff --git a/Code/Mantid/MantidQt/SliceViewer/src/main_common.cpp b/MantidQt/SliceViewer/src/main_common.cpp
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rename from Code/Mantid/MantidQt/SliceViewer/src/main_common.cpp
rename to MantidQt/SliceViewer/src/main_common.cpp
diff --git a/Code/Mantid/MantidQt/SliceViewer/test/CompositePeaksPresenterTest.h b/MantidQt/SliceViewer/test/CompositePeaksPresenterTest.h
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rename from Code/Mantid/MantidQt/SliceViewer/test/CompositePeaksPresenterTest.h
rename to MantidQt/SliceViewer/test/CompositePeaksPresenterTest.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/test/ConcretePeaksPresenterTest.h b/MantidQt/SliceViewer/test/ConcretePeaksPresenterTest.h
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rename from Code/Mantid/MantidQt/SliceViewer/test/ConcretePeaksPresenterTest.h
rename to MantidQt/SliceViewer/test/ConcretePeaksPresenterTest.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/test/MockObjects.h b/MantidQt/SliceViewer/test/MockObjects.h
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rename from Code/Mantid/MantidQt/SliceViewer/test/MockObjects.h
rename to MantidQt/SliceViewer/test/MockObjects.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/test/NullPeaksPresenterTest.h b/MantidQt/SliceViewer/test/NullPeaksPresenterTest.h
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rename from Code/Mantid/MantidQt/SliceViewer/test/NullPeaksPresenterTest.h
rename to MantidQt/SliceViewer/test/NullPeaksPresenterTest.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/test/PeakBoundingBoxTest.h b/MantidQt/SliceViewer/test/PeakBoundingBoxTest.h
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rename from Code/Mantid/MantidQt/SliceViewer/test/PeakBoundingBoxTest.h
rename to MantidQt/SliceViewer/test/PeakBoundingBoxTest.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/test/PeakOverlayViewFactorySelectorTest.h b/MantidQt/SliceViewer/test/PeakOverlayViewFactorySelectorTest.h
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rename from Code/Mantid/MantidQt/SliceViewer/test/PeakOverlayViewFactorySelectorTest.h
rename to MantidQt/SliceViewer/test/PeakOverlayViewFactorySelectorTest.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/test/PeakPaletteTest.h b/MantidQt/SliceViewer/test/PeakPaletteTest.h
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rename from Code/Mantid/MantidQt/SliceViewer/test/PeakPaletteTest.h
rename to MantidQt/SliceViewer/test/PeakPaletteTest.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/test/PhysicalCrossPeakTest.h b/MantidQt/SliceViewer/test/PhysicalCrossPeakTest.h
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rename from Code/Mantid/MantidQt/SliceViewer/test/PhysicalCrossPeakTest.h
rename to MantidQt/SliceViewer/test/PhysicalCrossPeakTest.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/test/PhysicalSphericalPeakTest.h b/MantidQt/SliceViewer/test/PhysicalSphericalPeakTest.h
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rename from Code/Mantid/MantidQt/SliceViewer/test/PhysicalSphericalPeakTest.h
rename to MantidQt/SliceViewer/test/PhysicalSphericalPeakTest.h
diff --git a/Code/Mantid/MantidQt/SliceViewer/test/QwtTypesPythonInterfaceTest.py b/MantidQt/SliceViewer/test/QwtTypesPythonInterfaceTest.py
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diff --git a/Code/Mantid/Testing/Tools/cxxtest/build_tools/SCons/test/globbing/src/test_bar.t.h b/Testing/Tools/cxxtest/build_tools/SCons/test/globbing/src/test_bar.t.h
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diff --git a/Code/Mantid/Testing/Tools/cxxtest/build_tools/SCons/test/globbing_edmundo/README b/Testing/Tools/cxxtest/build_tools/SCons/test/globbing_edmundo/README
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diff --git a/Code/Mantid/Testing/Tools/cxxtest/build_tools/SCons/test/include_CCFLAGS/README b/Testing/Tools/cxxtest/build_tools/SCons/test/include_CCFLAGS/README
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diff --git a/Code/Mantid/Testing/Tools/cxxtest/build_tools/SCons/test/printer_propagation/SConstruct b/Testing/Tools/cxxtest/build_tools/SCons/test/printer_propagation/SConstruct
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diff --git a/Code/Mantid/Testing/Tools/cxxtest/build_tools/SCons/test/printer_propagation/src/failtest.t.h b/Testing/Tools/cxxtest/build_tools/SCons/test/printer_propagation/src/failtest.t.h
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diff --git a/Code/Mantid/Testing/Tools/cxxtest/build_tools/SCons/test/recursive_sources/README b/Testing/Tools/cxxtest/build_tools/SCons/test/recursive_sources/README
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diff --git a/Code/Mantid/Testing/Tools/cxxtest/build_tools/SCons/test/string_cpppath/SConstruct b/Testing/Tools/cxxtest/build_tools/SCons/test/string_cpppath/SConstruct
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diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewReaders/SQWEventReader/CMakeLists.txt b/Vates/ParaviewPlugins/ParaViewReaders/SQWEventReader/CMakeLists.txt
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diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/MDEWSource/vtkMDEWSource.cxx b/Vates/ParaviewPlugins/ParaViewSources/MDEWSource/vtkMDEWSource.cxx
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rename from Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/MDEWSource/vtkMDEWSource.cxx
rename to Vates/ParaviewPlugins/ParaViewSources/MDEWSource/vtkMDEWSource.cxx
diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/MDEWSource/vtkMDEWSource.h b/Vates/ParaviewPlugins/ParaViewSources/MDEWSource/vtkMDEWSource.h
similarity index 100%
rename from Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/MDEWSource/vtkMDEWSource.h
rename to Vates/ParaviewPlugins/ParaViewSources/MDEWSource/vtkMDEWSource.h
diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/MDHWSource/CMakeLists.txt b/Vates/ParaviewPlugins/ParaViewSources/MDHWSource/CMakeLists.txt
similarity index 100%
rename from Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/MDHWSource/CMakeLists.txt
rename to Vates/ParaviewPlugins/ParaViewSources/MDHWSource/CMakeLists.txt
diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/MDHWSource/MDHWSource.xml b/Vates/ParaviewPlugins/ParaViewSources/MDHWSource/MDHWSource.xml
similarity index 100%
rename from Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/MDHWSource/MDHWSource.xml
rename to Vates/ParaviewPlugins/ParaViewSources/MDHWSource/MDHWSource.xml
diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/MDHWSource/vtkMDHWSource.cxx b/Vates/ParaviewPlugins/ParaViewSources/MDHWSource/vtkMDHWSource.cxx
similarity index 100%
rename from Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/MDHWSource/vtkMDHWSource.cxx
rename to Vates/ParaviewPlugins/ParaViewSources/MDHWSource/vtkMDHWSource.cxx
diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/MDHWSource/vtkMDHWSource.h b/Vates/ParaviewPlugins/ParaViewSources/MDHWSource/vtkMDHWSource.h
similarity index 100%
rename from Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/MDHWSource/vtkMDHWSource.h
rename to Vates/ParaviewPlugins/ParaViewSources/MDHWSource/vtkMDHWSource.h
diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/PeaksSource/CMakeLists.txt b/Vates/ParaviewPlugins/ParaViewSources/PeaksSource/CMakeLists.txt
similarity index 100%
rename from Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/PeaksSource/CMakeLists.txt
rename to Vates/ParaviewPlugins/ParaViewSources/PeaksSource/CMakeLists.txt
diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/PeaksSource/PeaksSource.xml b/Vates/ParaviewPlugins/ParaViewSources/PeaksSource/PeaksSource.xml
similarity index 100%
rename from Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/PeaksSource/PeaksSource.xml
rename to Vates/ParaviewPlugins/ParaViewSources/PeaksSource/PeaksSource.xml
diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/PeaksSource/vtkPeaksSource.cxx b/Vates/ParaviewPlugins/ParaViewSources/PeaksSource/vtkPeaksSource.cxx
similarity index 100%
rename from Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/PeaksSource/vtkPeaksSource.cxx
rename to Vates/ParaviewPlugins/ParaViewSources/PeaksSource/vtkPeaksSource.cxx
diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/PeaksSource/vtkPeaksSource.h b/Vates/ParaviewPlugins/ParaViewSources/PeaksSource/vtkPeaksSource.h
similarity index 100%
rename from Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/PeaksSource/vtkPeaksSource.h
rename to Vates/ParaviewPlugins/ParaViewSources/PeaksSource/vtkPeaksSource.h
diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/SinglePeakMarkerSource/CMakeLists.txt b/Vates/ParaviewPlugins/ParaViewSources/SinglePeakMarkerSource/CMakeLists.txt
similarity index 100%
rename from Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/SinglePeakMarkerSource/CMakeLists.txt
rename to Vates/ParaviewPlugins/ParaViewSources/SinglePeakMarkerSource/CMakeLists.txt
diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/SinglePeakMarkerSource/SinglePeakMarkerSource.xml b/Vates/ParaviewPlugins/ParaViewSources/SinglePeakMarkerSource/SinglePeakMarkerSource.xml
similarity index 100%
rename from Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/SinglePeakMarkerSource/SinglePeakMarkerSource.xml
rename to Vates/ParaviewPlugins/ParaViewSources/SinglePeakMarkerSource/SinglePeakMarkerSource.xml
diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/SinglePeakMarkerSource/vtkSinglePeakMarkerSource.cxx b/Vates/ParaviewPlugins/ParaViewSources/SinglePeakMarkerSource/vtkSinglePeakMarkerSource.cxx
similarity index 100%
rename from Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/SinglePeakMarkerSource/vtkSinglePeakMarkerSource.cxx
rename to Vates/ParaviewPlugins/ParaViewSources/SinglePeakMarkerSource/vtkSinglePeakMarkerSource.cxx
diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/SinglePeakMarkerSource/vtkSinglePeakMarkerSource.h b/Vates/ParaviewPlugins/ParaViewSources/SinglePeakMarkerSource/vtkSinglePeakMarkerSource.h
similarity index 100%
rename from Code/Mantid/Vates/ParaviewPlugins/ParaViewSources/SinglePeakMarkerSource/vtkSinglePeakMarkerSource.h
rename to Vates/ParaviewPlugins/ParaViewSources/SinglePeakMarkerSource/vtkSinglePeakMarkerSource.h
diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewWidgets/CMakeLists.txt b/Vates/ParaviewPlugins/ParaViewWidgets/CMakeLists.txt
similarity index 100%
rename from Code/Mantid/Vates/ParaviewPlugins/ParaViewWidgets/CMakeLists.txt
rename to Vates/ParaviewPlugins/ParaViewWidgets/CMakeLists.txt
diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/BinInputWidget.h b/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/BinInputWidget.h
similarity index 100%
rename from Code/Mantid/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/BinInputWidget.h
rename to Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/BinInputWidget.h
diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/CMakeLists.txt b/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/CMakeLists.txt
similarity index 100%
rename from Code/Mantid/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/CMakeLists.txt
rename to Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/CMakeLists.txt
diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/LowHighStepInputWidget.cpp b/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/LowHighStepInputWidget.cpp
similarity index 100%
rename from Code/Mantid/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/LowHighStepInputWidget.cpp
rename to Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/LowHighStepInputWidget.cpp
diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/LowHighStepInputWidget.h b/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/LowHighStepInputWidget.h
similarity index 100%
rename from Code/Mantid/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/LowHighStepInputWidget.h
rename to Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/LowHighStepInputWidget.h
diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/SimpleBinInputWidget.cpp b/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/SimpleBinInputWidget.cpp
similarity index 100%
rename from Code/Mantid/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/SimpleBinInputWidget.cpp
rename to Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/SimpleBinInputWidget.cpp
diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/SimpleBinInputWidget.h b/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/SimpleBinInputWidget.h
similarity index 100%
rename from Code/Mantid/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/SimpleBinInputWidget.h
rename to Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/SimpleBinInputWidget.h
diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/ThresholdRangeWidget.cpp b/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/ThresholdRangeWidget.cpp
similarity index 100%
rename from Code/Mantid/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/ThresholdRangeWidget.cpp
rename to Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/ThresholdRangeWidget.cpp
diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/ThresholdRangeWidget.h b/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/ThresholdRangeWidget.h
similarity index 100%
rename from Code/Mantid/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/ThresholdRangeWidget.h
rename to Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/ThresholdRangeWidget.h
diff --git a/Code/Mantid/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/WidgetDllOption.h b/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/WidgetDllOption.h
similarity index 100%
rename from Code/Mantid/Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/WidgetDllOption.h
rename to Vates/ParaviewPlugins/ParaViewWidgets/QtWidgets/WidgetDllOption.h
diff --git a/Code/Mantid/Vates/VatesAPI/CMakeLists.txt b/Vates/VatesAPI/CMakeLists.txt
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/CMakeLists.txt
rename to Vates/VatesAPI/CMakeLists.txt
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/ADSWorkspaceProvider.h b/Vates/VatesAPI/inc/MantidVatesAPI/ADSWorkspaceProvider.h
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/ADSWorkspaceProvider.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/ADSWorkspaceProvider.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/BoxInfo.h b/Vates/VatesAPI/inc/MantidVatesAPI/BoxInfo.h
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/BoxInfo.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/BoxInfo.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/ColorScaleGuard.h b/Vates/VatesAPI/inc/MantidVatesAPI/ColorScaleGuard.h
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/ColorScaleGuard.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/ColorScaleGuard.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/Common.h b/Vates/VatesAPI/inc/MantidVatesAPI/Common.h
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/Common.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/Common.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/CompositePeaksPresenterVsi.h b/Vates/VatesAPI/inc/MantidVatesAPI/CompositePeaksPresenterVsi.h
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/CompositePeaksPresenterVsi.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/CompositePeaksPresenterVsi.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/ConcretePeaksPresenterVsi.h b/Vates/VatesAPI/inc/MantidVatesAPI/ConcretePeaksPresenterVsi.h
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/ConcretePeaksPresenterVsi.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/ConcretePeaksPresenterVsi.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/DimensionViewFactory.h b/Vates/VatesAPI/inc/MantidVatesAPI/DimensionViewFactory.h
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/DimensionViewFactory.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/DimensionViewFactory.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/EventNexusLoadingPresenter.h b/Vates/VatesAPI/inc/MantidVatesAPI/EventNexusLoadingPresenter.h
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/EventNexusLoadingPresenter.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/EventNexusLoadingPresenter.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/FieldDataToMetadata.h b/Vates/VatesAPI/inc/MantidVatesAPI/FieldDataToMetadata.h
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/FieldDataToMetadata.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/FieldDataToMetadata.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/FilteringUpdateProgressAction.h b/Vates/VatesAPI/inc/MantidVatesAPI/FilteringUpdateProgressAction.h
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/FilteringUpdateProgressAction.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/FilteringUpdateProgressAction.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/GeometryView.h b/Vates/VatesAPI/inc/MantidVatesAPI/GeometryView.h
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/GeometryView.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/GeometryView.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/IMDDimensionComparitor.h b/Vates/VatesAPI/inc/MantidVatesAPI/IMDDimensionComparitor.h
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/IMDDimensionComparitor.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/IMDDimensionComparitor.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/IgnoreZerosThresholdRange.h b/Vates/VatesAPI/inc/MantidVatesAPI/IgnoreZerosThresholdRange.h
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/IgnoreZerosThresholdRange.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/IgnoreZerosThresholdRange.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/LoadVTK.h b/Vates/VatesAPI/inc/MantidVatesAPI/LoadVTK.h
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/LoadVTK.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/LoadVTK.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MDEWEventNexusLoadingPresenter.h b/Vates/VatesAPI/inc/MantidVatesAPI/MDEWEventNexusLoadingPresenter.h
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MDEWEventNexusLoadingPresenter.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/MDEWEventNexusLoadingPresenter.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MDEWInMemoryLoadingPresenter.h b/Vates/VatesAPI/inc/MantidVatesAPI/MDEWInMemoryLoadingPresenter.h
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MDEWInMemoryLoadingPresenter.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/MDEWInMemoryLoadingPresenter.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MDEWLoadingPresenter.h b/Vates/VatesAPI/inc/MantidVatesAPI/MDEWLoadingPresenter.h
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MDEWLoadingPresenter.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/MDEWLoadingPresenter.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MDHWInMemoryLoadingPresenter.h b/Vates/VatesAPI/inc/MantidVatesAPI/MDHWInMemoryLoadingPresenter.h
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MDHWInMemoryLoadingPresenter.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/MDHWInMemoryLoadingPresenter.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MDHWLoadingPresenter.h b/Vates/VatesAPI/inc/MantidVatesAPI/MDHWLoadingPresenter.h
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MDHWLoadingPresenter.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/MDHWLoadingPresenter.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MDHWNexusLoadingPresenter.h b/Vates/VatesAPI/inc/MantidVatesAPI/MDHWNexusLoadingPresenter.h
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MDHWNexusLoadingPresenter.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/MDHWNexusLoadingPresenter.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MDLoadingPresenter.h b/Vates/VatesAPI/inc/MantidVatesAPI/MDLoadingPresenter.h
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MDLoadingPresenter.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/MDLoadingPresenter.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MDLoadingView.h b/Vates/VatesAPI/inc/MantidVatesAPI/MDLoadingView.h
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MDLoadingView.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/MDLoadingView.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MDLoadingViewAdapter.h b/Vates/VatesAPI/inc/MantidVatesAPI/MDLoadingViewAdapter.h
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rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MDLoadingViewAdapter.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/MDLoadingViewAdapter.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MedianAndBelowThresholdRange.h b/Vates/VatesAPI/inc/MantidVatesAPI/MedianAndBelowThresholdRange.h
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MedianAndBelowThresholdRange.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/MedianAndBelowThresholdRange.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MetaDataExtractorUtils.h b/Vates/VatesAPI/inc/MantidVatesAPI/MetaDataExtractorUtils.h
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rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MetaDataExtractorUtils.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/MetaDataExtractorUtils.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MetadataJsonManager.h b/Vates/VatesAPI/inc/MantidVatesAPI/MetadataJsonManager.h
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rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MetadataJsonManager.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/MetadataJsonManager.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MetadataToFieldData.h b/Vates/VatesAPI/inc/MantidVatesAPI/MetadataToFieldData.h
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rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/MetadataToFieldData.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/MetadataToFieldData.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/NoThresholdRange.h b/Vates/VatesAPI/inc/MantidVatesAPI/NoThresholdRange.h
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rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/NoThresholdRange.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/NoThresholdRange.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/Normalization.h b/Vates/VatesAPI/inc/MantidVatesAPI/Normalization.h
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rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/Normalization.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/Normalization.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/NullPeaksPresenterVsi.h b/Vates/VatesAPI/inc/MantidVatesAPI/NullPeaksPresenterVsi.h
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rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/NullPeaksPresenterVsi.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/NullPeaksPresenterVsi.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/PeaksPresenterVsi.h b/Vates/VatesAPI/inc/MantidVatesAPI/PeaksPresenterVsi.h
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rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/PeaksPresenterVsi.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/PeaksPresenterVsi.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/PrecompiledHeader.h b/Vates/VatesAPI/inc/MantidVatesAPI/PrecompiledHeader.h
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rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/PrecompiledHeader.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/PrecompiledHeader.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/ProgressAction.h b/Vates/VatesAPI/inc/MantidVatesAPI/ProgressAction.h
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rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/ProgressAction.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/ProgressAction.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/SQWLoadingPresenter.h b/Vates/VatesAPI/inc/MantidVatesAPI/SQWLoadingPresenter.h
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rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/SQWLoadingPresenter.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/SQWLoadingPresenter.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/ThresholdRange.h b/Vates/VatesAPI/inc/MantidVatesAPI/ThresholdRange.h
similarity index 100%
rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/ThresholdRange.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/ThresholdRange.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/TimeStepToTimeStep.h b/Vates/VatesAPI/inc/MantidVatesAPI/TimeStepToTimeStep.h
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rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/TimeStepToTimeStep.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/TimeStepToTimeStep.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/TimeToTimeStep.h b/Vates/VatesAPI/inc/MantidVatesAPI/TimeToTimeStep.h
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rename from Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/TimeToTimeStep.h
rename to Vates/VatesAPI/inc/MantidVatesAPI/TimeToTimeStep.h
diff --git a/Code/Mantid/Vates/VatesAPI/inc/MantidVatesAPI/UserDefinedThresholdRange.h b/Vates/VatesAPI/inc/MantidVatesAPI/UserDefinedThresholdRange.h
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/ColorMapManager.h b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/ColorMapManager.h
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/ColorSelectionWidget.h b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/ColorSelectionWidget.h
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rename from Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/ColorSelectionWidget.h
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/ColorSelectionWidget.ui b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/ColorSelectionWidget.ui
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/ColorUpdater.h b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/ColorUpdater.h
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rename from Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/ColorUpdater.h
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/LibHelper.h.in b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/LibHelper.h.in
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/MdViewerWidget.h b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/MdViewerWidget.h
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rename from Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/MdViewerWidget.h
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/MdViewerWidget.ui b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/MdViewerWidget.ui
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/MultisliceView.h b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/MultisliceView.h
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rename from Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/MultisliceView.h
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/MultisliceView.ui b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/MultisliceView.ui
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/PeaksTabWidget.h b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/PeaksTabWidget.h
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rename from Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/PeaksTabWidget.h
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/PeaksTabWidget.ui b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/PeaksTabWidget.ui
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rename from Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/PeaksTabWidget.ui
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/PeaksTableControllerVsi.h b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/PeaksTableControllerVsi.h
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rename from Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/PeaksTableControllerVsi.h
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/PeaksWidget.h b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/PeaksWidget.h
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rename from Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/PeaksWidget.h
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/PeaksWidget.ui b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/PeaksWidget.ui
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rename from Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/PeaksWidget.ui
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/RebinAlgorithmDialogProvider.h b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/RebinAlgorithmDialogProvider.h
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rename from Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/RebinAlgorithmDialogProvider.h
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/RebinnedSourcesManager.h b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/RebinnedSourcesManager.h
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rename from Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/RebinnedSourcesManager.h
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/SaveScreenshotReaction.h b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/SaveScreenshotReaction.h
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rename from Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/SaveScreenshotReaction.h
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/SplatterPlotView.h b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/SplatterPlotView.h
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rename from Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/SplatterPlotView.h
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/SplatterPlotView.ui b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/SplatterPlotView.ui
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/StandardView.h b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/StandardView.h
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/StandardView.ui b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/StandardView.ui
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/ThreesliceView.h b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/ThreesliceView.h
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/TimeControlWidget.h b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/TimeControlWidget.h
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/VatesParaViewApplication.h b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/VatesParaViewApplication.h
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rename from Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/VatesParaViewApplication.h
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/ViewBase.h b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/ViewBase.h
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/VsiApplyBehaviour.h b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/VsiApplyBehaviour.h
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rename from Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/VsiApplyBehaviour.h
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/WidgetDllOption.h b/Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/WidgetDllOption.h
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/src/AutoScaleRangeGenerator.cpp b/Vates/VatesSimpleGui/ViewWidgets/src/AutoScaleRangeGenerator.cpp
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/src/BackgroundRgbProvider.cpp b/Vates/VatesSimpleGui/ViewWidgets/src/BackgroundRgbProvider.cpp
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/src/CameraManager.cpp b/Vates/VatesSimpleGui/ViewWidgets/src/CameraManager.cpp
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/src/ColorMapEditorPanel.cpp b/Vates/VatesSimpleGui/ViewWidgets/src/ColorMapEditorPanel.cpp
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rename from Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/src/ColorMapManager.cpp
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/src/ColorSelectionWidget.cpp b/Vates/VatesSimpleGui/ViewWidgets/src/ColorSelectionWidget.cpp
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/src/MdViewerWidget.cpp b/Vates/VatesSimpleGui/ViewWidgets/src/MdViewerWidget.cpp
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/src/MultisliceView.cpp b/Vates/VatesSimpleGui/ViewWidgets/src/MultisliceView.cpp
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/src/PeaksTabWidget.cpp b/Vates/VatesSimpleGui/ViewWidgets/src/PeaksTabWidget.cpp
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/src/PeaksTableControllerVsi.cpp b/Vates/VatesSimpleGui/ViewWidgets/src/PeaksTableControllerVsi.cpp
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/src/PeaksWidget.cpp b/Vates/VatesSimpleGui/ViewWidgets/src/PeaksWidget.cpp
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/src/RebinAlgorithmDialogProvider.cpp b/Vates/VatesSimpleGui/ViewWidgets/src/RebinAlgorithmDialogProvider.cpp
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/src/RebinnedSourcesManager.cpp b/Vates/VatesSimpleGui/ViewWidgets/src/RebinnedSourcesManager.cpp
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/src/SaveScreenshotReaction.cpp b/Vates/VatesSimpleGui/ViewWidgets/src/SaveScreenshotReaction.cpp
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/src/SplatterPlotView.cpp b/Vates/VatesSimpleGui/ViewWidgets/src/SplatterPlotView.cpp
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/src/StandardView.cpp b/Vates/VatesSimpleGui/ViewWidgets/src/StandardView.cpp
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/src/ThreesliceView.cpp b/Vates/VatesSimpleGui/ViewWidgets/src/ThreesliceView.cpp
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/src/TimeControlWidget.cpp b/Vates/VatesSimpleGui/ViewWidgets/src/TimeControlWidget.cpp
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/src/VatesParaViewApplication.cpp b/Vates/VatesSimpleGui/ViewWidgets/src/VatesParaViewApplication.cpp
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rename from Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/src/VatesParaViewApplication.cpp
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/src/ViewBase.cpp b/Vates/VatesSimpleGui/ViewWidgets/src/ViewBase.cpp
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rename from Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/src/ViewBase.cpp
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/src/VsiApplyBehaviour.cpp b/Vates/VatesSimpleGui/ViewWidgets/src/VsiApplyBehaviour.cpp
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rename from Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/src/VsiApplyBehaviour.cpp
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/test/common/scripts/common_checks.py b/Vates/VatesSimpleGui/ViewWidgets/test/common/scripts/common_checks.py
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/test/common/scripts/test_helpers.py b/Vates/VatesSimpleGui/ViewWidgets/test/common/scripts/test_helpers.py
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rename from Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/test/common/scripts/test_helpers.py
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/test/mp_scripts/mdew_3D.py b/Vates/VatesSimpleGui/ViewWidgets/test/mp_scripts/mdew_3D.py
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/test/mp_scripts/mdew_4D.py b/Vates/VatesSimpleGui/ViewWidgets/test/mp_scripts/mdew_4D.py
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/test/mp_scripts/mdhistos_from_3D.py b/Vates/VatesSimpleGui/ViewWidgets/test/mp_scripts/mdhistos_from_3D.py
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diff --git a/Code/Mantid/Vates/VatesSimpleGui/ViewWidgets/test/mp_scripts/mdhistos_from_4D.py b/Vates/VatesSimpleGui/ViewWidgets/test/mp_scripts/mdhistos_from_4D.py
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rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/diffraction/diffraction_filter_setup_script.py
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diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/diffraction/diffraction_reduction_script.py b/scripts/Interface/reduction_gui/reduction/diffraction/diffraction_reduction_script.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/diffraction/diffraction_reduction_script.py
rename to scripts/Interface/reduction_gui/reduction/diffraction/diffraction_reduction_script.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/diffraction/diffraction_run_setup_script.py b/scripts/Interface/reduction_gui/reduction/diffraction/diffraction_run_setup_script.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/diffraction/diffraction_run_setup_script.py
rename to scripts/Interface/reduction_gui/reduction/diffraction/diffraction_run_setup_script.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/eqsans_reduction.py b/scripts/Interface/reduction_gui/reduction/eqsans_reduction.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/eqsans_reduction.py
rename to scripts/Interface/reduction_gui/reduction/eqsans_reduction.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/hfir_reduction.py b/scripts/Interface/reduction_gui/reduction/hfir_reduction.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/hfir_reduction.py
rename to scripts/Interface/reduction_gui/reduction/hfir_reduction.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/inelastic/__init__.py b/scripts/Interface/reduction_gui/reduction/inelastic/__init__.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/inelastic/__init__.py
rename to scripts/Interface/reduction_gui/reduction/inelastic/__init__.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/inelastic/dgs_absolute_units_script.py b/scripts/Interface/reduction_gui/reduction/inelastic/dgs_absolute_units_script.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/inelastic/dgs_absolute_units_script.py
rename to scripts/Interface/reduction_gui/reduction/inelastic/dgs_absolute_units_script.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/inelastic/dgs_data_corrections_script.py b/scripts/Interface/reduction_gui/reduction/inelastic/dgs_data_corrections_script.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/inelastic/dgs_data_corrections_script.py
rename to scripts/Interface/reduction_gui/reduction/inelastic/dgs_data_corrections_script.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/inelastic/dgs_diagnose_detectors_script.py b/scripts/Interface/reduction_gui/reduction/inelastic/dgs_diagnose_detectors_script.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/inelastic/dgs_diagnose_detectors_script.py
rename to scripts/Interface/reduction_gui/reduction/inelastic/dgs_diagnose_detectors_script.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/inelastic/dgs_pd_sc_conversion_script.py b/scripts/Interface/reduction_gui/reduction/inelastic/dgs_pd_sc_conversion_script.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/inelastic/dgs_pd_sc_conversion_script.py
rename to scripts/Interface/reduction_gui/reduction/inelastic/dgs_pd_sc_conversion_script.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/inelastic/dgs_reduction_script.py b/scripts/Interface/reduction_gui/reduction/inelastic/dgs_reduction_script.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/inelastic/dgs_reduction_script.py
rename to scripts/Interface/reduction_gui/reduction/inelastic/dgs_reduction_script.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/inelastic/dgs_sample_data_setup_script.py b/scripts/Interface/reduction_gui/reduction/inelastic/dgs_sample_data_setup_script.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/inelastic/dgs_sample_data_setup_script.py
rename to scripts/Interface/reduction_gui/reduction/inelastic/dgs_sample_data_setup_script.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/inelastic/dgs_utils.py b/scripts/Interface/reduction_gui/reduction/inelastic/dgs_utils.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/inelastic/dgs_utils.py
rename to scripts/Interface/reduction_gui/reduction/inelastic/dgs_utils.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/output_script.py b/scripts/Interface/reduction_gui/reduction/output_script.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/output_script.py
rename to scripts/Interface/reduction_gui/reduction/output_script.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/reflectometer/__init__.py b/scripts/Interface/reduction_gui/reduction/reflectometer/__init__.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/reflectometer/__init__.py
rename to scripts/Interface/reduction_gui/reduction/reflectometer/__init__.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/reflectometer/refl_data_script.py b/scripts/Interface/reduction_gui/reduction/reflectometer/refl_data_script.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/reflectometer/refl_data_script.py
rename to scripts/Interface/reduction_gui/reduction/reflectometer/refl_data_script.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/reflectometer/refl_data_series.py b/scripts/Interface/reduction_gui/reduction/reflectometer/refl_data_series.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/reflectometer/refl_data_series.py
rename to scripts/Interface/reduction_gui/reduction/reflectometer/refl_data_series.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/reflectometer/refl_reduction.py b/scripts/Interface/reduction_gui/reduction/reflectometer/refl_reduction.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/reflectometer/refl_reduction.py
rename to scripts/Interface/reduction_gui/reduction/reflectometer/refl_reduction.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/reflectometer/refl_sf_calculator.py b/scripts/Interface/reduction_gui/reduction/reflectometer/refl_sf_calculator.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/reflectometer/refl_sf_calculator.py
rename to scripts/Interface/reduction_gui/reduction/reflectometer/refl_sf_calculator.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/reflectometer/refl_sf_calculator_data_script.py b/scripts/Interface/reduction_gui/reduction/reflectometer/refl_sf_calculator_data_script.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/reflectometer/refl_sf_calculator_data_script.py
rename to scripts/Interface/reduction_gui/reduction/reflectometer/refl_sf_calculator_data_script.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/reflectometer/refl_sf_calculator_data_series.py b/scripts/Interface/reduction_gui/reduction/reflectometer/refl_sf_calculator_data_series.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/reflectometer/refl_sf_calculator_data_series.py
rename to scripts/Interface/reduction_gui/reduction/reflectometer/refl_sf_calculator_data_series.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/reflectometer/refm_data_script.py b/scripts/Interface/reduction_gui/reduction/reflectometer/refm_data_script.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/reflectometer/refm_data_script.py
rename to scripts/Interface/reduction_gui/reduction/reflectometer/refm_data_script.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/__init__.py b/scripts/Interface/reduction_gui/reduction/sans/__init__.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/__init__.py
rename to scripts/Interface/reduction_gui/reduction/sans/__init__.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/data_cat.py b/scripts/Interface/reduction_gui/reduction/sans/data_cat.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/data_cat.py
rename to scripts/Interface/reduction_gui/reduction/sans/data_cat.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/eqsans_background_script.py b/scripts/Interface/reduction_gui/reduction/sans/eqsans_background_script.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/eqsans_background_script.py
rename to scripts/Interface/reduction_gui/reduction/sans/eqsans_background_script.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/eqsans_catalog.py b/scripts/Interface/reduction_gui/reduction/sans/eqsans_catalog.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/eqsans_catalog.py
rename to scripts/Interface/reduction_gui/reduction/sans/eqsans_catalog.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/eqsans_data_proxy.py b/scripts/Interface/reduction_gui/reduction/sans/eqsans_data_proxy.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/eqsans_data_proxy.py
rename to scripts/Interface/reduction_gui/reduction/sans/eqsans_data_proxy.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/eqsans_data_script.py b/scripts/Interface/reduction_gui/reduction/sans/eqsans_data_script.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/eqsans_data_script.py
rename to scripts/Interface/reduction_gui/reduction/sans/eqsans_data_script.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/eqsans_options_script.py b/scripts/Interface/reduction_gui/reduction/sans/eqsans_options_script.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/eqsans_options_script.py
rename to scripts/Interface/reduction_gui/reduction/sans/eqsans_options_script.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/eqsans_sample_script.py b/scripts/Interface/reduction_gui/reduction/sans/eqsans_sample_script.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/eqsans_sample_script.py
rename to scripts/Interface/reduction_gui/reduction/sans/eqsans_sample_script.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/hfir_background_script.py b/scripts/Interface/reduction_gui/reduction/sans/hfir_background_script.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/hfir_background_script.py
rename to scripts/Interface/reduction_gui/reduction/sans/hfir_background_script.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/hfir_catalog.py b/scripts/Interface/reduction_gui/reduction/sans/hfir_catalog.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/hfir_catalog.py
rename to scripts/Interface/reduction_gui/reduction/sans/hfir_catalog.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/hfir_data_proxy.py b/scripts/Interface/reduction_gui/reduction/sans/hfir_data_proxy.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/hfir_data_proxy.py
rename to scripts/Interface/reduction_gui/reduction/sans/hfir_data_proxy.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/hfir_detector_script.py b/scripts/Interface/reduction_gui/reduction/sans/hfir_detector_script.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/hfir_detector_script.py
rename to scripts/Interface/reduction_gui/reduction/sans/hfir_detector_script.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/hfir_options_script.py b/scripts/Interface/reduction_gui/reduction/sans/hfir_options_script.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/hfir_options_script.py
rename to scripts/Interface/reduction_gui/reduction/sans/hfir_options_script.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/hfir_sample_script.py b/scripts/Interface/reduction_gui/reduction/sans/hfir_sample_script.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/sans/hfir_sample_script.py
rename to scripts/Interface/reduction_gui/reduction/sans/hfir_sample_script.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/reduction/scripter.py b/scripts/Interface/reduction_gui/reduction/scripter.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/reduction/scripter.py
rename to scripts/Interface/reduction_gui/reduction/scripter.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/settings/__init__.py b/scripts/Interface/reduction_gui/settings/__init__.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/settings/__init__.py
rename to scripts/Interface/reduction_gui/settings/__init__.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/settings/application_settings.py b/scripts/Interface/reduction_gui/settings/application_settings.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/settings/application_settings.py
rename to scripts/Interface/reduction_gui/settings/application_settings.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/__init__.py b/scripts/Interface/reduction_gui/widgets/__init__.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/__init__.py
rename to scripts/Interface/reduction_gui/widgets/__init__.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/base_widget.py b/scripts/Interface/reduction_gui/widgets/base_widget.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/base_widget.py
rename to scripts/Interface/reduction_gui/widgets/base_widget.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/cluster_status.py b/scripts/Interface/reduction_gui/widgets/cluster_status.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/cluster_status.py
rename to scripts/Interface/reduction_gui/widgets/cluster_status.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/diffraction/__init__.py b/scripts/Interface/reduction_gui/widgets/diffraction/__init__.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/diffraction/__init__.py
rename to scripts/Interface/reduction_gui/widgets/diffraction/__init__.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/diffraction/diffraction_adv_setup.py b/scripts/Interface/reduction_gui/widgets/diffraction/diffraction_adv_setup.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/diffraction/diffraction_adv_setup.py
rename to scripts/Interface/reduction_gui/widgets/diffraction/diffraction_adv_setup.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/diffraction/diffraction_filter_setup.py b/scripts/Interface/reduction_gui/widgets/diffraction/diffraction_filter_setup.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/diffraction/diffraction_filter_setup.py
rename to scripts/Interface/reduction_gui/widgets/diffraction/diffraction_filter_setup.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/diffraction/diffraction_run_setup.py b/scripts/Interface/reduction_gui/widgets/diffraction/diffraction_run_setup.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/diffraction/diffraction_run_setup.py
rename to scripts/Interface/reduction_gui/widgets/diffraction/diffraction_run_setup.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/inelastic/__init__.py b/scripts/Interface/reduction_gui/widgets/inelastic/__init__.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/inelastic/__init__.py
rename to scripts/Interface/reduction_gui/widgets/inelastic/__init__.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/inelastic/dgs_absolute_units.py b/scripts/Interface/reduction_gui/widgets/inelastic/dgs_absolute_units.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/inelastic/dgs_absolute_units.py
rename to scripts/Interface/reduction_gui/widgets/inelastic/dgs_absolute_units.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/inelastic/dgs_data_corrections.py b/scripts/Interface/reduction_gui/widgets/inelastic/dgs_data_corrections.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/inelastic/dgs_data_corrections.py
rename to scripts/Interface/reduction_gui/widgets/inelastic/dgs_data_corrections.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/inelastic/dgs_diagnose_detectors.py b/scripts/Interface/reduction_gui/widgets/inelastic/dgs_diagnose_detectors.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/inelastic/dgs_diagnose_detectors.py
rename to scripts/Interface/reduction_gui/widgets/inelastic/dgs_diagnose_detectors.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/inelastic/dgs_pd_sc_conversion.py b/scripts/Interface/reduction_gui/widgets/inelastic/dgs_pd_sc_conversion.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/inelastic/dgs_pd_sc_conversion.py
rename to scripts/Interface/reduction_gui/widgets/inelastic/dgs_pd_sc_conversion.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/inelastic/dgs_sample_setup.py b/scripts/Interface/reduction_gui/widgets/inelastic/dgs_sample_setup.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/inelastic/dgs_sample_setup.py
rename to scripts/Interface/reduction_gui/widgets/inelastic/dgs_sample_setup.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/output.py b/scripts/Interface/reduction_gui/widgets/output.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/output.py
rename to scripts/Interface/reduction_gui/widgets/output.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/reflectometer/LoadSNSRoi.py b/scripts/Interface/reduction_gui/widgets/reflectometer/LoadSNSRoi.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/reflectometer/LoadSNSRoi.py
rename to scripts/Interface/reduction_gui/widgets/reflectometer/LoadSNSRoi.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/reflectometer/__init__.py b/scripts/Interface/reduction_gui/widgets/reflectometer/__init__.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/reflectometer/__init__.py
rename to scripts/Interface/reduction_gui/widgets/reflectometer/__init__.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/reflectometer/base_ref_reduction.py b/scripts/Interface/reduction_gui/widgets/reflectometer/base_ref_reduction.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/reflectometer/base_ref_reduction.py
rename to scripts/Interface/reduction_gui/widgets/reflectometer/base_ref_reduction.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/reflectometer/launch_peak_back_selection_1d.py b/scripts/Interface/reduction_gui/widgets/reflectometer/launch_peak_back_selection_1d.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/reflectometer/launch_peak_back_selection_1d.py
rename to scripts/Interface/reduction_gui/widgets/reflectometer/launch_peak_back_selection_1d.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/reflectometer/refl_data_simple.py b/scripts/Interface/reduction_gui/widgets/reflectometer/refl_data_simple.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/reflectometer/refl_data_simple.py
rename to scripts/Interface/reduction_gui/widgets/reflectometer/refl_data_simple.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/reflectometer/refl_reduction.py b/scripts/Interface/reduction_gui/widgets/reflectometer/refl_reduction.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/reflectometer/refl_reduction.py
rename to scripts/Interface/reduction_gui/widgets/reflectometer/refl_reduction.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/reflectometer/refl_sf_calculator.py b/scripts/Interface/reduction_gui/widgets/reflectometer/refl_sf_calculator.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/reflectometer/refl_sf_calculator.py
rename to scripts/Interface/reduction_gui/widgets/reflectometer/refl_sf_calculator.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/reflectometer/refm_reduction.py b/scripts/Interface/reduction_gui/widgets/reflectometer/refm_reduction.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/reflectometer/refm_reduction.py
rename to scripts/Interface/reduction_gui/widgets/reflectometer/refm_reduction.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/reflectometer/stitcher.py b/scripts/Interface/reduction_gui/widgets/reflectometer/stitcher.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/reflectometer/stitcher.py
rename to scripts/Interface/reduction_gui/widgets/reflectometer/stitcher.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/sans/__init__.py b/scripts/Interface/reduction_gui/widgets/sans/__init__.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/sans/__init__.py
rename to scripts/Interface/reduction_gui/widgets/sans/__init__.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/sans/eqsans_data.py b/scripts/Interface/reduction_gui/widgets/sans/eqsans_data.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/sans/eqsans_data.py
rename to scripts/Interface/reduction_gui/widgets/sans/eqsans_data.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/sans/eqsans_instrument.py b/scripts/Interface/reduction_gui/widgets/sans/eqsans_instrument.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/sans/eqsans_instrument.py
rename to scripts/Interface/reduction_gui/widgets/sans/eqsans_instrument.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/sans/hfir_background.py b/scripts/Interface/reduction_gui/widgets/sans/hfir_background.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/sans/hfir_background.py
rename to scripts/Interface/reduction_gui/widgets/sans/hfir_background.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/sans/hfir_detector.py b/scripts/Interface/reduction_gui/widgets/sans/hfir_detector.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/sans/hfir_detector.py
rename to scripts/Interface/reduction_gui/widgets/sans/hfir_detector.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/sans/hfir_instrument.py b/scripts/Interface/reduction_gui/widgets/sans/hfir_instrument.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/sans/hfir_instrument.py
rename to scripts/Interface/reduction_gui/widgets/sans/hfir_instrument.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/sans/hfir_sample_data.py b/scripts/Interface/reduction_gui/widgets/sans/hfir_sample_data.py
similarity index 100%
rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/sans/hfir_sample_data.py
rename to scripts/Interface/reduction_gui/widgets/sans/hfir_sample_data.py
diff --git a/Code/Mantid/scripts/Interface/reduction_gui/widgets/sans/sans_catalog.py b/scripts/Interface/reduction_gui/widgets/sans/sans_catalog.py
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rename from Code/Mantid/scripts/Interface/reduction_gui/widgets/sans/sans_catalog.py
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diff --git a/Code/Mantid/scripts/Interface/ui/sans/CMakeLists.txt b/scripts/Interface/ui/sans/CMakeLists.txt
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diff --git a/Code/Mantid/scripts/test/ConvertToWavelengthTest.py b/scripts/test/ConvertToWavelengthTest.py
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rename from Code/Mantid/scripts/test/ConvertToWavelengthTest.py
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diff --git a/Code/Mantid/scripts/test/DirectEnergyConversionTest.py b/scripts/test/DirectEnergyConversionTest.py
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rename from Code/Mantid/scripts/test/DirectEnergyConversionTest.py
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diff --git a/Code/Mantid/scripts/test/DirectPropertyManagerTest.py b/scripts/test/DirectPropertyManagerTest.py
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rename from Code/Mantid/scripts/test/DirectPropertyManagerTest.py
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diff --git a/Code/Mantid/scripts/test/DirectPropertyManater_OldInterfaceXest.py b/scripts/test/DirectPropertyManater_OldInterfaceXest.py
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rename from Code/Mantid/scripts/test/DirectPropertyManater_OldInterfaceXest.py
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diff --git a/Code/Mantid/scripts/test/DirectReductionHelpersTest.py b/scripts/test/DirectReductionHelpersTest.py
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rename from Code/Mantid/scripts/test/DirectReductionHelpersTest.py
rename to scripts/test/DirectReductionHelpersTest.py
diff --git a/Code/Mantid/scripts/test/ISISDirecInelasticConfigTest.py b/scripts/test/ISISDirecInelasticConfigTest.py
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rename from Code/Mantid/scripts/test/ISISDirecInelasticConfigTest.py
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diff --git a/Code/Mantid/scripts/test/IndirectCommonTests.py b/scripts/test/IndirectCommonTests.py
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rename from Code/Mantid/scripts/test/IndirectCommonTests.py
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diff --git a/Code/Mantid/scripts/test/MariReduction.py b/scripts/test/MariReduction.py
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rename from Code/Mantid/scripts/test/MariReduction.py
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diff --git a/Code/Mantid/scripts/test/ReductionSettingsTest.py b/scripts/test/ReductionSettingsTest.py
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rename from Code/Mantid/scripts/test/ReductionSettingsTest.py
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diff --git a/Code/Mantid/scripts/test/ReductionWrapperTest.py b/scripts/test/ReductionWrapperTest.py
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rename from Code/Mantid/scripts/test/ReductionWrapperTest.py
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diff --git a/Code/Mantid/scripts/test/ReflectometryQuickAuxiliaryTest.py b/scripts/test/ReflectometryQuickAuxiliaryTest.py
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rename from Code/Mantid/scripts/test/ReflectometryQuickAuxiliaryTest.py
rename to scripts/test/ReflectometryQuickAuxiliaryTest.py
diff --git a/Code/Mantid/scripts/test/RunDescriptorTest.py b/scripts/test/RunDescriptorTest.py
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rename from Code/Mantid/scripts/test/RunDescriptorTest.py
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diff --git a/Code/Mantid/scripts/test/SANSBatchModeTest.py b/scripts/test/SANSBatchModeTest.py
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rename from Code/Mantid/scripts/test/SANSBatchModeTest.py
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diff --git a/Code/Mantid/scripts/test/SANSCommandInterfaceTest.py b/scripts/test/SANSCommandInterfaceTest.py
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rename from Code/Mantid/scripts/test/SANSCommandInterfaceTest.py
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diff --git a/Code/Mantid/scripts/test/SANSIsisInstrumentTest.py b/scripts/test/SANSIsisInstrumentTest.py
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rename from Code/Mantid/scripts/test/SANSIsisInstrumentTest.py
rename to scripts/test/SANSIsisInstrumentTest.py
diff --git a/Code/Mantid/scripts/test/SANSReductionStepsUserFileTest.py b/scripts/test/SANSReductionStepsUserFileTest.py
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rename from Code/Mantid/scripts/test/SANSReductionStepsUserFileTest.py
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diff --git a/Code/Mantid/scripts/test/SANSUtilityTest.py b/scripts/test/SANSUtilityTest.py
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rename from Code/Mantid/scripts/test/SANSUtilityTest.py
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diff --git a/Code/Mantid/scripts/test/SansIsisGuiSettings.py b/scripts/test/SansIsisGuiSettings.py
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rename from Code/Mantid/scripts/test/SansIsisGuiSettings.py
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diff --git a/Code/Mantid/scripts/test/SettingsTest.py b/scripts/test/SettingsTest.py
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rename from Code/Mantid/scripts/test/SettingsTest.py
rename to scripts/test/SettingsTest.py
diff --git a/Code/Mantid/scripts/test/User_files_description_test.xml b/scripts/test/User_files_description_test.xml
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rename from Code/Mantid/scripts/test/User_files_description_test.xml
rename to scripts/test/User_files_description_test.xml