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base repository: viralemergence/epizootic
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base: v1.0.0
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head repository: viralemergence/epizootic
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  • 2 commits
  • 9 files changed
  • 1 contributor

Commits on Sep 30, 2024

  1. Copy the full SHA
    9d9e5e8 View commit details
  2. Unbreak links in README

    japilo committed Sep 30, 2024
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Showing with 32 additions and 29 deletions.
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  4. +3 −0 CRAN-SUBMISSION
  5. +10 −4 DESCRIPTION
  6. +9 −3 README.Rmd
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  8. +1 −1 man/epizootic-package.Rd
  9. BIN man/figures/README-disease_simulator-2.png
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3 changes: 3 additions & 0 deletions CRAN-SUBMISSION
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Version: 1.0.0
Date: 2024-09-27 18:22:56 UTC
SHA: a98f40c26e8a84234ef72202f2416410563a8869
14 changes: 10 additions & 4 deletions DESCRIPTION
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@@ -2,12 +2,18 @@ Package: epizootic
Title: Spatially Explicit Population Models of Disease Transmission in Wildlife
Version: 1.0.0
Authors@R: c(
person("July", "Pilowsky", email = "pilowskyj@caryinstitute.org", role = c("aut", "cre"),
person("July", "Pilowsky", email = "pilowskyj@caryinstitute.org",
role = c("aut", "cre"),
comment = c(ORCID = "https://orcid.org/0000-0002-6376-2585")),
person("National Science Foundation Biology Integration Institute 2213854", role = "fnd")
person("National Science Foundation Biology Integration Institute 2213854",
role = "fnd")
)
Description: This extension of the pattern-oriented modeling framework of the poems package
provides a collection of modules and functions customized for modeling disease transmission on a population scale in a spatiotemporally explicit manner. This includes seasonal time steps, dispersal functions that track disease state of dispersers, results objects that store disease states, and a population simulator that includes disease dynamics.
Description: This extension of the pattern-oriented modeling framework of the
'poems' package provides a collection of modules and functions customized
for modeling disease transmission on a population scale in a spatiotemporally
explicit manner. This includes seasonal time steps, dispersal functions that
track disease state of dispersers, results objects that store disease states,
and a population simulator that includes disease dynamics.
License: GPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
12 changes: 9 additions & 3 deletions README.Rmd
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<!-- badges: start -->
[![R-CMD-check](https://github.com/viralemergence/epizootic/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/viralemergence/epizootic/actions/workflows/R-CMD-check.yaml)
[![CRAN status](https://www.r-pkg.org/badges/version/paleopop)](https://CRAN.R-project.org/package=paleopop)
[![Download_count](https://cranlogs.r-pkg.org/badges/grand-total/paleopop)](https://CRAN.R-project.org/package=paleopop)
[![Last commit](https://img.shields.io/github/last-commit/GlobalEcologyLab/paleopop.svg)](https://github.com/GlobalEcologyLab/paleopop/commits/master)
[![CRAN status](https://www.r-pkg.org/badges/version/epizootic)](https://CRAN.R-project.org/package=epizootic)
[![Download_count](https://cranlogs.r-pkg.org/badges/grand-total/epizootic)](https://CRAN.R-project.org/package=epizootic)
[![Last commit](https://img.shields.io/github/last-commit/viralemergence/epizootic.svg)](https://github.com/viralemergence/epizootic/commits/master)
<!-- badges: end -->

`epizootic` is an extension to `poems`, a spatially-explicit, process-explicit, pattern-oriented framework for modeling population dynamics. This extension adds functionality for modeling disease dynamics in wildlife. It also adds capability for seasonality and for unique dispersal dynamics for each life cycle stage.

## Installation

You can install the latest release on CRAN with:

``` r
install.packages("epizootic")
```

You can install the latest version of epizootic from [GitHub](https://github.com/) with:

``` r
12 changes: 9 additions & 3 deletions README.md
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[![R-CMD-check](https://github.com/viralemergence/epizootic/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/viralemergence/epizootic/actions/workflows/R-CMD-check.yaml)
[![CRAN
status](https://www.r-pkg.org/badges/version/paleopop)](https://CRAN.R-project.org/package=paleopop)
[![Download_count](https://cranlogs.r-pkg.org/badges/grand-total/paleopop)](https://CRAN.R-project.org/package=paleopop)
status](https://www.r-pkg.org/badges/version/epizootic)](https://CRAN.R-project.org/package=epizootic)
[![Download_count](https://cranlogs.r-pkg.org/badges/grand-total/epizootic)](https://CRAN.R-project.org/package=epizootic)
[![Last
commit](https://img.shields.io/github/last-commit/GlobalEcologyLab/paleopop.svg)](https://github.com/GlobalEcologyLab/paleopop/commits/master)
commit](https://img.shields.io/github/last-commit/viralemergence/epizootic.svg)](https://github.com/viralemergence/epizootic/commits/master)
<!-- badges: end -->

`epizootic` is an extension to `poems`, a spatially-explicit,
@@ -21,6 +21,12 @@ unique dispersal dynamics for each life cycle stage.

## Installation

You can install the latest release on CRAN with:

``` r
install.packages("epizootic")
```

You can install the latest version of epizootic from
[GitHub](https://github.com/) with:

2 changes: 1 addition & 1 deletion man/epizootic-package.Rd

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