DESCRIPTION

Package: epizootic
Title: Spatially Explicit Population Models of Disease Transmission in Wildlife
Version: 1.0.0
Authors@R: c(
    person("July", "Pilowsky", email = "pilowskyj@caryinstitute.org", 
           role = c("aut", "cre"), 
           comment = c(ORCID = "https://orcid.org/0000-0002-6376-2585")),
    person("National Science Foundation Biology Integration Institute 2213854", 
           role = "fnd")
    )
Description: This extension of the pattern-oriented modeling framework of the 
    'poems' package provides a collection of modules and functions customized 
    for modeling disease transmission on a population scale in a spatiotemporally 
    explicit manner. This includes seasonal time steps, dispersal functions that 
    track disease state of dispersers, results objects that store disease states, 
    and a population simulator that includes disease dynamics.
License: GPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
URL: https://github.com/viralemergence/epizootic
BugReports: https://github.com/viralemergence/epizootic/issues
Depends: R (>= 4.3.0)
Imports:
    purrr (>= 1.0.0),
    dplyr (>= 1.1.3),
    tibble (>= 3.2.1),
    R6 (>= 2.5.1),
    cli (>= 3.6.1),
    raster (>= 3.6),
    qs (>= 0.25.7),
    poems (>= 1.1.0),
    doParallel (>= 1.0.16),
    foreach (>= 1.5.1),
    Rcpp
Suggests: 
    testthat (>= 3.0.0),
    geosphere (>= 1.5),
    knitr (>= 1.17),
    rmarkdown (>= 1.6)
Config/testthat/edition: 3
Collate: 
    'DiseaseModel.R'
    'RcppExports.R'
    'SimulationHandler.R'
    'aspatial_siri_seasons.R'
    'check_aspatial_siri_inputs.R'
    'check_simulator_inputs.R'
    'data.R'
    'disease_dispersal.r'
    'disease_results.R'
    'disease_simulator.R'
    'disease_transformation.R'
    'disease_transitions.R'
    'epizootic-package.R'
LinkingTo: 
    Rcpp,
    RcppArmadillo
VignetteBuilder: knitr
LazyData: true