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csv2xle.py
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'''
Written by Andre Renault, 2022-09-14.
This is a script to convert Solinst .csv files into .xle files.
This allows for compensation of Levelogger data by Barologger data.
Lots of loose ends, particularly in the header section, to be tied up.
For instance, start and stop times should be the first and last times in the csv.
But this is good enough for now I think.
'''
def cleanuptime(toClean):
oldDigs = str(toClean[:2])
if toClean[-2:] == 'pm':
if oldDigs == '12':
newDigs = oldDigs
else:
newDigs = str(int(oldDigs)+12)
elif oldDigs == '12':
newDigs = '00'
else:
newDigs = oldDigs
newStr = newDigs + toClean[2:-3]
return newStr
def cleanupdate(toClean):
mdy = re.findall(r'\b\d+\b', toClean)
if int(mdy[0]) > 40: return toClean
if int(mdy[0]) < 10: mdy[0] = '0'+mdy[0]
if int(mdy[1]) < 10: mdy[1] = '0'+mdy[1]
ymd = "{}-{}-{}".format(mdy[2],mdy[0],mdy[1])
return ymd
import re
import argparse
parser = argparse.ArgumentParser(description='Extract position data from ADVfiles.')
parser.add_argument('input', help = 'input filename(s)', nargs='+')
#parser.add_argument('output', help = 'output filename')
args = parser.parse_args()
for i in args.input:
inFileName = i
#outFileName = args.output
outFileName = inFileName.replace("csv","xle")
print("Opening " + inFileName)
'''
file1 = open(inFileName, 'r')
Lines = file1.readlines()
Nums = []
'''
if "BL" in inFileName:
modelNumber = "M1.5"
elif "LV" in inFileName:
modelNumber = "M5"
else:
modelNumber = "M10"
outFileObj = open(outFileName, 'w', encoding="utf8", errors='ignore')
inFileObj = open(inFileName, 'r', encoding="utf8", errors='ignore')
myline = inFileObj.readline()
myline = inFileObj.readline()
Serial_number = myline.split(",")
myline = inFileObj.readline()
myline = inFileObj.readline()
Project_ID = myline.split(",")
myline = inFileObj.readline()
myline = inFileObj.readline()
Location = myline.split(",")
myline = inFileObj.readline()
myline = inFileObj.readline()
FUNIT = myline.split(": ")
levelUnit = str(FUNIT[1]).strip()
myline = inFileObj.readline()
if myline[0:7] == "Offset:":
Offset = str(re.findall(r'\b\d+\b',myline))
myline = inFileObj.readline()
else:
Offset = "0.0000"
myline = inFileObj.readline()
TUNIT = myline.split(": ")
tempUnit = str(TUNIT[-1]).strip()
myline = inFileObj.readline()
outFileObj.write("<?xml version=\"1.0\" ?>"+'\n')
outFileObj.write("<Body_xle>"+'\n')
outFileObj.write(" <Data>"+'\n')
# Now the fun begins
counter = 0
myline = inFileObj.readline()
while myline:
counter += 1
myline_s = myline.rstrip()
values = myline_s.split(",")
theDate = cleanupdate(str(values[0]))
theTime = cleanuptime(str(values[1]))
if counter == 1:
startDate = theDate
startTime = theTime
outFileObj.write(" <Log id=\""+str(counter)+"\">"+'\n')
outFileObj.write(" <Date>"+theDate+"</Date>"+'\n')
outFileObj.write(" <Time>"+theTime+"</Time>"+'\n')
if len(values) == 5:
outFileObj.write(" <ms>"+str(values[-3])+"</ms>"+'\n')
outFileObj.write(" <ch1>"+str(values[-2])+"</ch1>"+'\n')
outFileObj.write(" <ch2>"+str(values[-1])+"</ch2>"+'\n')
outFileObj.write(" </Log>"+'\n')
stopDate = theDate
stopTime = theTime
myline = inFileObj.readline()
inFileObj.close()
outFileObj.write(" </Data>"+'\n')
# This is all kind of boilerplate and I couldn't be bothered to deal with it
# Further experimentation will deal with leaving out these variables entirely
outFileObj.write(" <File_info>"+'\n')
outFileObj.write(" <Company></Company>"+'\n')
outFileObj.write(" <LICENCE></LICENCE>"+'\n')
outFileObj.write(" <Date>"+theDate+"</Date>"+'\n')
outFileObj.write(" <Time>"+theDate+"</Time>"+'\n')
outFileObj.write(" <FileName>"+inFileName+"</FileName>"+'\n')
outFileObj.write(" <Created_by>Version 4.6.2</Created_by>"+'\n')
outFileObj.write(" <Downloaded_by>Version 4.6.2</Downloaded_by>"+'\n')
outFileObj.write(" <Program_by>PC Software 4.6.2</Program_by>"+'\n')
outFileObj.write(" <Interface>Desktop Reader (513755)</Interface>"+'\n')
outFileObj.write(" </File_info>"+'\n')
outFileObj.write(" <Instrument_info>"+'\n')
outFileObj.write(" <Instrument_type>L5_LT</Instrument_type>"+'\n')
outFileObj.write(" <Model_number>"+modelNumber+"</Model_number>"+'\n')
outFileObj.write(" <Instrument_state>Stopped</Instrument_state>"+'\n')
outFileObj.write(" <Serial_number>"+str(Serial_number[0]).strip()+"</Serial_number>"+'\n')
outFileObj.write(" <Battery_voltage>0.0000</Battery_voltage>"+'\n')
outFileObj.write(" <Battery_charge>0.00</Battery_charge>"+'\n')
outFileObj.write(" <Channel>2</Channel>"+'\n')
outFileObj.write(" <Firmware>1.005</Firmware>"+'\n')
outFileObj.write(" </Instrument_info>"+'\n')
outFileObj.write(" <Instrument_info_data_header>"+'\n')
outFileObj.write(" <Project_ID>"+str(Project_ID[0]).strip()+"</Project_ID>"+'\n')
outFileObj.write(" <Location>"+str(Location[0]).strip()+"</Location>"+'\n')
outFileObj.write(" <Latitude>0.000</Latitude>"+'\n')
outFileObj.write(" <Longtitude>0.000</Longtitude>"+'\n')
outFileObj.write(" <Sample_rate>30000</Sample_rate>"+'\n')
outFileObj.write(" <Sample_mode>0</Sample_mode>"+'\n')
outFileObj.write(" <!--Linear-->"+'\n')
outFileObj.write(" <Memory_mode>Slate</Memory_mode>"+'\n')
outFileObj.write(" <Event_ch>1</Event_ch>"+'\n')
outFileObj.write(" <Event_threshold>0.000000</Event_threshold>"+'\n')
outFileObj.write(" <Schedule />"+'\n')
outFileObj.write(" <Start_time>"+startDate+" "+startTime+"</Start_time>"+'\n')
outFileObj.write(" <Stop_time>"+stopDate+" "+stopTime+"</Stop_time>"+'\n')
outFileObj.write(" <Num_log>"+str(counter)+"</Num_log>"+'\n')
outFileObj.write(" </Instrument_info_data_header>"+'\n')
outFileObj.write(" <Ch1_data_header>"+'\n')
outFileObj.write(" <Identification>LEVEL</Identification>"+'\n')
outFileObj.write(" <Unit>"+levelUnit+"</Unit>"+'\n')
outFileObj.write(" <Parameters>"+'\n')
outFileObj.write(" <Offset Val=\""+Offset+"\" Unit=\""+levelUnit+"\" />"+'\n')
outFileObj.write(" </Parameters>"+'\n')
outFileObj.write(" </Ch1_data_header>"+'\n')
outFileObj.write(" <Ch2_data_header>"+'\n')
outFileObj.write(" <Identification>TEMPERATURE</Identification>"+'\n')
outFileObj.write(" <Unit>"+tempUnit+"</Unit>"+'\n')
outFileObj.write(" <Parameters />"+'\n')
outFileObj.write(" </Ch2_data_header>"+'\n')
outFileObj.write("</Body_xle>"+'\n')
print("Closing " + outFileName)
outFileObj.close()