diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json new file mode 100644 index 0000000..28dcb86 --- /dev/null +++ b/.devcontainer/devcontainer.json @@ -0,0 +1,44 @@ +// For format details, see https://aka.ms/devcontainer.json. For config options, see the +// README at: https://github.com/devcontainers/templates/tree/main/src/docker-existing-docker-compose +{ + "name": "Existing Docker Compose (Extend)", + + // Update the 'dockerComposeFile' list if you have more compose files or use different names. + // The .devcontainer/docker-compose.yml file contains any overrides you need/want to make. + "dockerComposeFile": [ + "../docker-compose.yml", + "docker-compose.yml" + ], + + // The 'service' property is the name of the service for the container that VS Code should + // use. Update this value and .devcontainer/docker-compose.yml to the real service name. + "service": "redis", + + // The optional 'workspaceFolder' property is the path VS Code should open by default when + // connected. This is typically a file mount in .devcontainer/docker-compose.yml + "workspaceFolder": "/workspaces/${localWorkspaceFolderBasename}", + "features": { + "ghcr.io/devcontainers/features/python:1": {} + } + + // Features to add to the dev container. More info: https://containers.dev/features. + // "features": {}, + + // Use 'forwardPorts' to make a list of ports inside the container available locally. + // "forwardPorts": [], + + // Uncomment the next line if you want start specific services in your Docker Compose config. + // "runServices": [], + + // Uncomment the next line if you want to keep your containers running after VS Code shuts down. + // "shutdownAction": "none", + + // Uncomment the next line to run commands after the container is created. + // "postCreateCommand": "cat /etc/os-release", + + // Configure tool-specific properties. + // "customizations": {}, + + // Uncomment to connect as an existing user other than the container default. More info: https://aka.ms/dev-containers-non-root. + // "remoteUser": "devcontainer" +} diff --git a/.devcontainer/docker-compose.yml b/.devcontainer/docker-compose.yml new file mode 100644 index 0000000..4186ea1 --- /dev/null +++ b/.devcontainer/docker-compose.yml @@ -0,0 +1,26 @@ +version: '3.7' +services: + # Update this to the name of the service you want to work with in your docker-compose.yml file + redis: + # Uncomment if you want to override the service's Dockerfile to one in the .devcontainer + # folder. Note that the path of the Dockerfile and context is relative to the *primary* + # docker-compose.yml file (the first in the devcontainer.json "dockerComposeFile" + # array). The sample below assumes your primary file is in the root of your project. + # + # build: + # context: . + # dockerfile: .devcontainer/Dockerfile + + volumes: + # Update this to wherever you want VS Code to mount the folder of your project + - ..:/workspaces:cached + + # Uncomment the next four lines if you will use a ptrace-based debugger like C++, Go, and Rust. + # cap_add: + # - SYS_PTRACE + # security_opt: + # - seccomp:unconfined + + # Overrides default command so things don't shut down after the process ends. + command: sleep infinity + diff --git a/.github/dependabot.yml b/.github/dependabot.yml new file mode 100644 index 0000000..f33a02c --- /dev/null +++ b/.github/dependabot.yml @@ -0,0 +1,12 @@ +# To get started with Dependabot version updates, you'll need to specify which +# package ecosystems to update and where the package manifests are located. +# Please see the documentation for more information: +# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates +# https://containers.dev/guide/dependabot + +version: 2 +updates: + - package-ecosystem: "devcontainers" + directory: "/" + schedule: + interval: weekly diff --git a/client/.dockerignore b/client/.dockerignore new file mode 100644 index 0000000..b512c09 --- /dev/null +++ b/client/.dockerignore @@ -0,0 +1 @@ +node_modules \ No newline at end of file diff --git a/client/.env b/client/.env new file mode 100644 index 0000000..df60ff7 --- /dev/null +++ b/client/.env @@ -0,0 +1 @@ +VITE_API_SERVER="http://localhost:8000" \ No newline at end of file diff --git a/client/Dockerfile b/client/Dockerfile new file mode 100644 index 0000000..e7b2235 --- /dev/null +++ b/client/Dockerfile @@ -0,0 +1,15 @@ +FROM node:18-alpine AS build + +WORKDIR /app + +ENV PATH /app/node_modules/.bin:$PATH +COPY package.json package-lock.json ./ +RUN npm install +COPY . ./ +RUN npm run build + + +FROM nginx:1.21.5-alpine AS release +COPY --from=build /app/dist /usr/share/nginx/html/ +EXPOSE 80 +CMD ["nginx", "-g", "daemon off;"] \ No newline at end of file diff --git a/client/src/App.tsx b/client/src/App.tsx index 7c7ddbb..465be91 100644 --- a/client/src/App.tsx +++ b/client/src/App.tsx @@ -4,7 +4,8 @@ import './index.css' import FrontPage from './pages/FrontPage' import ResultPage from './pages/ResultPage' import LoadingPage from './pages/LoadingPage' -import { useRequest } from './hooks/useRequest' +import { API_SERVER } from './config/config' + function App() { const [file, setFile] = useState(null) const [loading, setLoading] = useState(false) @@ -16,7 +17,7 @@ function App() { const newBody = new FormData() newBody.append("file", file as File) setLoading(true); - fetch('http://localhost:8000/tasks', {method: 'POST', body: newBody}).then((res) => { + fetch(`${API_SERVER}/tasks`, {method: 'POST', body: newBody}).then((res) => { if (res.ok) { setLoading(false) res.json().then((data) => { @@ -38,7 +39,7 @@ function App() { } return ( - + diff --git a/client/src/config/config.ts b/client/src/config/config.ts new file mode 100644 index 0000000..1af8193 --- /dev/null +++ b/client/src/config/config.ts @@ -0,0 +1 @@ +export const API_SERVER = process.env.API_SERVER ?? "http://localhost:8000"; \ No newline at end of file diff --git a/client/src/modals/UploadDocumentModal.tsx b/client/src/modals/UploadDocumentModal.tsx index d0c8de0..d114347 100644 --- a/client/src/modals/UploadDocumentModal.tsx +++ b/client/src/modals/UploadDocumentModal.tsx @@ -25,7 +25,7 @@ export default function UploadDocumentModal({ ) { const reader = new FileReader(); reader.onload = (e) => { - const data = new Uint8Array(e.target.result); + const data = new Uint8Array(e.target?.result as ArrayBuffer); const workbook = xlsx.parse(data); const workbookData = workbook[0].data.slice(0, 5); setTableData(workbookData); diff --git a/client/src/pages/FrontPage.tsx b/client/src/pages/FrontPage.tsx index 956f3cf..7986a77 100644 --- a/client/src/pages/FrontPage.tsx +++ b/client/src/pages/FrontPage.tsx @@ -24,7 +24,7 @@ export default function FrontPage() { /> {setFile(file)}} + onFileSelected={(file) => {setFile(file as File)}} visible={documentModalIsVisible} setVisible={setDocumentModalIsVisible} /> diff --git a/client/src/pages/ResultPage.tsx b/client/src/pages/ResultPage.tsx index e5b71cb..e29a956 100644 --- a/client/src/pages/ResultPage.tsx +++ b/client/src/pages/ResultPage.tsx @@ -4,6 +4,7 @@ import ArrowDownTray from "../icons/ArrowDownTray"; import useFileContext from "../contexts/FileContext"; import xlsx from 'node-xlsx' import LoadingPage from "./LoadingPage"; +import { API_SERVER } from "../config/config"; export default function ResultPage() { @@ -17,7 +18,7 @@ export default function ResultPage() { if (!taskId) { return; } - const fetchStatus = () => fetch(`http://localhost:8000/tasks/${taskId}/status`) + const fetchStatus = () => fetch(`${API_SERVER}/tasks/${taskId}/status`) .then((res) => { if (res.ok) { res.json().then((data) => { @@ -49,7 +50,7 @@ export default function ResultPage() { if (!dataLoaded) { return; } - fetch(`http://localhost:8000/tasks/${taskId}/result`) + fetch(`${API_SERVER}/tasks/${taskId}/result`) .then((res) => { if (res.ok) { res.blob().then((data) => { @@ -68,7 +69,7 @@ export default function ResultPage() { const reader = new FileReader(); reader.onload = (e) => { - const data = new Uint8Array(e.target.result); + const data = new Uint8Array(e.target?.result as ArrayBuffer); const workbook = xlsx.parse(data); const workbookData = workbook[0].data.slice(1, 50); setData(workbookData); diff --git a/client/vite.config.ts b/client/vite.config.ts index 5a33944..ba2e1f4 100644 --- a/client/vite.config.ts +++ b/client/vite.config.ts @@ -1,7 +1,14 @@ -import { defineConfig } from 'vite' +import { defineConfig, loadEnv } from 'vite' import react from '@vitejs/plugin-react' // https://vitejs.dev/config/ -export default defineConfig({ +export default defineConfig(({mode}) => { + const env = loadEnv(mode, process.cwd(), ''); + + return { + define: { + 'process.env.API_SERVER': JSON.stringify(env.VITE_API_SERVER), + 'process.env.NODE_ENV': JSON.stringify(mode) + }, plugins: [react()], -}) +}}) diff --git a/docker-compose.yml b/docker-compose.yml new file mode 100644 index 0000000..2fe2604 --- /dev/null +++ b/docker-compose.yml @@ -0,0 +1,32 @@ +services: + redis: + image: redis + ports: + - "6379:6379" + + app: + container_name: app + build: ./server + restart: always + ports: + - "8000:8000" + depends_on: + - redis + + client: + container_name: client + build: ./client + restart: always + ports: + - "80:80" + depends_on: + - app + environment: + - API_SERVER=app:8000 + + celery_worker: + container_name: celery_worker + build: ./tasks + depends_on: + - redis + diff --git a/server/Dockerfile b/server/Dockerfile new file mode 100644 index 0000000..3ce57e5 --- /dev/null +++ b/server/Dockerfile @@ -0,0 +1,29 @@ +FROM python:3.12-slim-bullseye AS builder + +RUN pip install poetry==1.8.3 + +ENV POETRY_NO_INTERACTION=1 \ + POETRY_VIRTUALENVS_IN_PROJECT=1 \ + POETRY_VIRTUALENVS_CREATE=1 \ + POETRY_CACHE_DIR=/tmp/poetry_cache + +WORKDIR /app + +COPY pyproject.toml poetry.lock ./ +RUN touch README.md + +RUN --mount=type=cache,target=$POETRY_CACHE_DIR poetry install --no-root + +FROM python:3.12-slim-bullseye as runtime + +ENV VIRTUAL_ENV=/app/.venv \ + PATH="/app/.venv/bin:$PATH" + +COPY --from=builder ${VIRTUAL_ENV} ${VIRTUAL_ENV} + +RUN pip install fastapi[standard] uvicorn + +COPY . ./app + +WORKDIR /app +CMD ["fastapi", "run", "app.py"] \ No newline at end of file diff --git a/server/README.md b/server/README.md new file mode 100644 index 0000000..7ed8898 --- /dev/null +++ b/server/README.md @@ -0,0 +1,2 @@ +# Server package for Publication Manager Software + diff --git a/server/__pycache__/app.cpython-312.pyc b/server/__pycache__/app.cpython-312.pyc index 673a24e..543fb12 100644 Binary files a/server/__pycache__/app.cpython-312.pyc and b/server/__pycache__/app.cpython-312.pyc differ diff --git a/server/app.py b/server/app.py index b4e72b0..da81e9d 100644 --- a/server/app.py +++ b/server/app.py @@ -1,11 +1,18 @@ +import time - -from fastapi import FastAPI, UploadFile +from fastapi import FastAPI, Response, UploadFile from fastapi.responses import FileResponse from fastapi.middleware.cors import CORSMiddleware from celery import Celery -celery = Celery(__name__, broker="redis://localhost:6379/0", backend="redis://localhost:6379/0") +from supabase import create_client + + +celery = Celery(__name__, broker="redis://redis:6379/0", backend="redis://redis:6379/0") +celery.conf.broker_connection_retry_on_startup = True + +sp_client = create_client("https://xchmpfivomtlnslvbbbk.supabase.co", "eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJzdXBhYmFzZSIsInJlZiI6InhjaG1wZml2b210bG5zbHZiYmJrIiwicm9sZSI6ImFub24iLCJpYXQiOjE3MjQ2MDI4MDYsImV4cCI6MjA0MDE3ODgwNn0.HBs-xlJW21awsjyS5mje25g3Wu5M_TGFc2T7Q6urXLw") +sp_client.auth.sign_in_with_password({"email": "sairamkumar2022@gmail.com", "password": "123456"}) app = FastAPI() @@ -25,11 +32,13 @@ @app.post("/tasks") def run_task(file: UploadFile): + cur_time = int(time.time()) # download file - filename = "temp/files/" + file.filename - with open(filename, "wb") as buffer: - buffer.write(file.file.read()) - task = celery.send_task("background_task.main.process_excel", args=[filename]) + in_filename = f"input-{cur_time}.xlsx" + sp_client.storage.from_("excel-storage") \ + .upload(in_filename, file.file.read()) + + task = celery.send_task("main.process_excel", args=[in_filename]) return {"task_id": task.id} @app.get("/tasks/{task_id}/status") @@ -40,8 +49,12 @@ def task_status(task_id: str): @app.get("/tasks/{task_id}/result") def task_result(task_id: str): task = celery.AsyncResult(task_id) + out_file = task.result + file = sp_client.storage.from_("excel-storage") \ + .download(out_file) + # upload file - return FileResponse(task.result, media_type="application/vnd.openxmlformats-officedocument.spreadsheetml.sheet", filename="output.xlsx") + return Response(file, media_type="application/octet-stream", headers={"Content-Disposition": f"attachment; filename={out_file}"}) if __name__ == 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b/server/pyproject.toml @@ -13,6 +13,7 @@ uvicorn = "^0.30.6" python-multipart = "^0.0.9" celery = "^5.4.0" redis = "^5.0.8" +supabase = {git = "https://github.com/supabase/supabase-py.git"} [build-system] diff --git a/server/temp/files/input.xlsx b/server/temp/files/input.xlsx deleted file mode 100644 index 3b1d861..0000000 Binary files a/server/temp/files/input.xlsx and /dev/null differ diff --git a/server/temp/files/output.xlsx b/server/temp/files/output.xlsx deleted file mode 100644 index 92ca861..0000000 Binary files a/server/temp/files/output.xlsx and /dev/null differ diff --git a/tasks/Dockerfile b/tasks/Dockerfile new file mode 100644 index 0000000..a0ab4bb --- /dev/null +++ b/tasks/Dockerfile @@ -0,0 +1,28 @@ +FROM python:3.12-slim-bullseye AS builder + +RUN pip install poetry==1.8.3 + +ENV POETRY_NO_INTERACTION=1 \ + POETRY_VIRTUALENVS_IN_PROJECT=1 \ + POETRY_VIRTUALENVS_CREATE=1 \ + POETRY_CACHE_DIR=/tmp/poetry_cache + +WORKDIR /worker + +COPY pyproject.toml poetry.lock ./ +RUN touch README.md + +RUN --mount=type=cache,target=$POETRY_CACHE_DIR poetry install --no-root + +FROM python:3.12-slim-bullseye as runtime + +ENV VIRTUAL_ENV=/worker/.venv \ + PATH="/worker/.venv/bin:$PATH" + +COPY --from=builder ${VIRTUAL_ENV} ${VIRTUAL_ENV} + +COPY . ./worker + +WORKDIR /worker + +ENTRYPOINT ["celery", "-A", "celery_app.celery", "worker", "--loglevel=info", "--pool=solo"] \ No newline at end of file diff --git a/server/background_task/__init__.py b/tasks/README.md similarity index 100% rename from server/background_task/__init__.py rename to tasks/README.md diff --git a/tasks/__init__.py b/tasks/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/server/background_task/__pycache__/__init__.cpython-312.pyc b/tasks/__pycache__/__init__.cpython-312.pyc similarity index 100% rename from server/background_task/__pycache__/__init__.cpython-312.pyc rename to tasks/__pycache__/__init__.cpython-312.pyc diff --git a/tasks/__pycache__/celery_app.cpython-312.pyc b/tasks/__pycache__/celery_app.cpython-312.pyc new file mode 100644 index 0000000..06da175 Binary files /dev/null and b/tasks/__pycache__/celery_app.cpython-312.pyc differ diff --git a/tasks/__pycache__/main.cpython-312.pyc b/tasks/__pycache__/main.cpython-312.pyc new file mode 100644 index 0000000..ac33b1d Binary files /dev/null and b/tasks/__pycache__/main.cpython-312.pyc differ diff --git a/server/background_task/__pycache__/scraper.cpython-312.pyc b/tasks/__pycache__/scraper.cpython-312.pyc similarity index 63% rename from server/background_task/__pycache__/scraper.cpython-312.pyc rename to tasks/__pycache__/scraper.cpython-312.pyc index eafaa94..554e3b9 100644 Binary files a/server/background_task/__pycache__/scraper.cpython-312.pyc and b/tasks/__pycache__/scraper.cpython-312.pyc differ diff --git a/tasks/celery_app.py b/tasks/celery_app.py new file mode 100644 index 0000000..f829cd6 --- /dev/null +++ b/tasks/celery_app.py @@ -0,0 +1,4 @@ +from celery import Celery +from main import process_excel, process_scholarly +celery = Celery(__name__, broker="redis://redis:6379/0", backend="redis://redis:6379/0") +celery.conf.broker_connection_retry_on_startup = True \ No newline at end of file diff --git a/tasks/main.py b/tasks/main.py new file mode 100644 index 0000000..02ff9ab --- /dev/null +++ b/tasks/main.py @@ -0,0 +1,54 @@ +import time +import io + +from celery import current_app as celery +from supabase import create_client +from scraper import main as task_dblp + +client = create_client("https://xchmpfivomtlnslvbbbk.supabase.co", "eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJzdXBhYmFzZSIsInJlZiI6InhjaG1wZml2b210bG5zbHZiYmJrIiwicm9sZSI6ImFub24iLCJpYXQiOjE3MjQ2MDI4MDYsImV4cCI6MjA0MDE3ODgwNn0.HBs-xlJW21awsjyS5mje25g3Wu5M_TGFc2T7Q6urXLw") + + +import pathlib +pathlib.Path("temp/files/").mkdir(parents=True, exist_ok=True) + + + +@celery.task +def process_excel(in_file: str): + import asyncio + cur_time = int(time.time()) + out_file = f"output-{cur_time}.xlsx" + + print(f"Starting background task... {in_file}") + + with io.BytesIO() as in_buffer, io.BytesIO() as out_buffer: + in_buffer.write(client.storage.from_("excel-storage").download(in_file)) + asyncio.run(task_dblp(in_buffer, out_buffer)) + client.storage.from_("excel-storage").upload(out_file, out_buffer.getvalue()) # upload requires bytes not bytesIO + return out_file + +@celery.task +def process_excel_storage(in_filename: str): + import asyncio + cur_time = int(time.time()) + out_file = f"output-{cur_time}.xlsx" + + abs_in_path = f"temp/files/{in_filename}" + abs_out_path = f"temp/files/{out_file}" + + print(f"Starting background task... {in_filename}") + with open(abs_in_path, "wb") as buffer: + buffer.write(client.storage.from_("excel-storage").download(in_filename)) + + asyncio.run(task_dblp(abs_in_path, abs_out_path)) + client.storage.from_("excel-storage") \ + .upload(out_file, open(abs_out_path, "rb")) + return out_file + +@celery.task +def process_scholarly(filename: str): + from .scraper_scholarly import main as task + import asyncio + print(f"Starting background task... {filename}") + asyncio.run(task(filename, "temp/files/output.xlsx")) + return "temp/files/output.xlsx" diff --git a/server/background_task/poetry.lock b/tasks/poetry.lock similarity index 83% rename from server/background_task/poetry.lock rename to tasks/poetry.lock index 085980b..f669cb5 100644 --- a/server/background_task/poetry.lock +++ b/tasks/poetry.lock @@ -161,6 +161,17 @@ files = [ [package.dependencies] vine = ">=5.0.0,<6.0.0" +[[package]] +name = "annotated-types" +version = "0.7.0" +description = "Reusable constraint types to use with typing.Annotated" +optional = false +python-versions = ">=3.8" +files = [ + {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"}, + {file = "annotated_types-0.7.0.tar.gz", hash = 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Client Library for Supabase Auth" +optional = false +python-versions = "<4.0,>=3.8" +files = [ + {file = "gotrue-2.7.0-py3-none-any.whl", hash = "sha256:a0f617e3b5260c30dbd6832c471e45ff2c54261216e0af37d52a3eced0bf10c7"}, + {file = "gotrue-2.7.0.tar.gz", hash = "sha256:95c0a726f3fa53f32eb5fe9caebe31ed1ef0eeb5837dc4e65fb1e30ebc0623fd"}, +] + +[package.dependencies] +httpx = {version = ">=0.24,<0.28", extras = ["http2"]} +pydantic = ">=1.10,<3" + [[package]] name = "h11" version = "0.14.0" @@ -758,6 +798,32 @@ files = [ {file = "h11-0.14.0.tar.gz", hash = "sha256:8f19fbbe99e72420ff35c00b27a34cb9937e902a8b810e2c88300c6f0a3b699d"}, ] +[[package]] +name = "h2" +version = "4.1.0" +description = "HTTP/2 State-Machine based protocol implementation" +optional = false +python-versions = ">=3.6.1" +files = [ + {file = "h2-4.1.0-py3-none-any.whl", hash = "sha256:03a46bcf682256c95b5fd9e9a99c1323584c3eec6440d379b9903d709476bc6d"}, + {file = "h2-4.1.0.tar.gz", hash = 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a/server/background_task/scraper.py +++ b/tasks/scraper.py @@ -64,7 +64,8 @@ async def main(input_file, output_file): author_publications = asyncio.create_task(get_author_publications_dblp(name, publication_type, 2020, 2024)) tasks.append(author_publications) - await asyncio.sleep(random.randint(1, 3)) # to avoid getting blocked by the server + sleep_time = abs(0.1 + random.uniform(-0.2, 0.5)) + await asyncio.sleep(sleep_time) # to avoid getting blocked by the server author_publications = await asyncio.gather(*tasks) diff --git a/server/background_task/scraper_scholarly.py b/tasks/scraper_scholarly.py similarity index 100% rename from server/background_task/scraper_scholarly.py rename to tasks/scraper_scholarly.py