li.plotting.circle_plot error

[gianfilippo]

Hi,

I am trying to make a circle plot using the li.plotting.circle_plot call as follow
p = li.plotting.circle_plot(adata, liana_res=lr_res, groupby=clustCol)

I get
Traceback (most recent call last):
File "", line 1, in
File "/home/project/.conda/envs/Liana+/lib/python3.10/site-packages/liana/plotting/_circle_plot.py", line 178, in circle_plot
liana_res = _prep_liana_res(
File "/home/project/.conda/envs/Liana+/lib/python3.10/site-packages/liana/plotting/_common.py", line 32, in _prep_liana_res
liana_res = _get_liana_res(adata, liana_res, uns_key)
File "/home/project/.conda/envs/Liana+/lib/python3.10/site-packages/liana/plotting/_common.py", line 15, in _get_liana_res
assert uns_key in adata.uns.keys()
AssertionError

The adata.uns is
OrderedDict([('log1p', {'base': None})])

The default uns_key in the function is 'liana_res', which is not present in my adata.
Am I supposed to add it before calling the circle_plot function ?

Also, could you please explain the option filter ?

Thanks

[dbdimitrov]

Hi @gianfilippo,

Yes, or you could pass a different key that stores the dataframe that you wish to plot :)

[gianfilippo]

Ok. Thanks. It works without the filter function.