From cc9052cadc9900d0cb5d053401ac542a24d8ab4b Mon Sep 17 00:00:00 2001
From: Ned Peel <13928281+nedpeel@users.noreply.github.com>
Date: Wed, 4 Oct 2023 15:37:57 +0100
Subject: [PATCH] Update gui - v0.19.4

---
 gui/UI/index.js                       | 12 ++++++++----
 gui/UI/indexNode.html                 |  2 +-
 gui/UI/public/js/dashboard.js         | 20 +++++++++++++++++++-
 gui/UI/public/js/dashboardAmrDonut.js |  5 +++++
 gui/UI/public/js/universal.js         |  6 ++++--
 5 files changed, 37 insertions(+), 8 deletions(-)

diff --git a/gui/UI/index.js b/gui/UI/index.js
index 3628a1a..0ebfd69 100755
--- a/gui/UI/index.js
+++ b/gui/UI/index.js
@@ -140,10 +140,10 @@ if (serverOptions["https"].toLowerCase() === 'true') {
 
 const restrictedMode = argv.r || false;
 
-const martiVersion = "0.19.3";
+const martiGuiVersion = "0.19.4";
 
 if (argv.v || argv.version) {
-  console.log(martiVersion);
+  console.log(martiGuiVersion);
   process.exit();
 }
 
@@ -649,7 +649,11 @@ io.on('connect', function(socket){
 
   clientCount = socket.client.conn.server.clientsCount;
   console.log(`[${new Date().toLocaleString()}] Connection added - users connected: ${clientCount}`);
-  io.sockets.emit('current-client-count', clientCount);
+  var guiVersionAndClientCount = {
+    clientCount: clientCount,
+    guiVersion: martiGuiVersion
+  }
+  io.sockets.emit('current-client-count', guiVersionAndClientCount);
 
   socket.on('hb_pong', function(data){
   });
@@ -954,7 +958,7 @@ socket.on('compare-tree-request', request => {
         socket.on('disconnect', () => {
           clientCount = socket.client.conn.server.clientsCount;
           console.log(`[${new Date().toLocaleString()}] Connection removed - users connected: ${clientCount}`);
-          io.sockets.emit('current-client-count', clientCount);
+          io.sockets.emit('current-client-count', guiVersionAndClientCount);
         });
 
         socket.on('disconnecting', () => {
diff --git a/gui/UI/indexNode.html b/gui/UI/indexNode.html
index a578eb6..2aac736 100755
--- a/gui/UI/indexNode.html
+++ b/gui/UI/indexNode.html
@@ -282,7 +282,7 @@ <h3 id="no-js">To use MARTi, please enable JavaScript in your browser.</h3>
             </div>
 
             <div class="copyright text-center my-auto">
-              <span>MARTi GUI v0.19.3</span>
+              <span id="currentGuiVersion">MARTi GUI v0.0.0</span>
               <span id="currentClientCount" style="color:white">0</span>
             </div>
           </div>
diff --git a/gui/UI/public/js/dashboard.js b/gui/UI/public/js/dashboard.js
index 467ca5c..49197ee 100755
--- a/gui/UI/public/js/dashboard.js
+++ b/gui/UI/public/js/dashboard.js
@@ -476,11 +476,17 @@ socket.on('dashboard-meta-response', function(data) {
 
   $("#dashboardInfoCardDatabase").text(classificationDb);
 
+  if (dashboardSampleData.analysis.classification.algorithm == "Centrifuge") {
+    centrifugeClassification = true;
+    $("#dashboardAmrDonutRow").hide();
+  }
 
   plotReadsDonut(dashboardSampleData);
 
 });
 
+var centrifugeClassification = false;
+
 var root;
 var globDonutData;
 var treeMapData;
@@ -1064,7 +1070,6 @@ socket.on('dashboard-dashboardAmrTable-response', function(data) {
         initialisePlotVisibility("dashboardAmrDonut",true);
       }
 
-
       plotAmrDonut(dashboardAmrReponseData);
 
       if (!dashboardChartVisibility.hasOwnProperty("dashboardAmrHitsDonut")) {
@@ -1290,6 +1295,19 @@ d3.selectAll(".dashboard-amr-chunk-time").text(dashboardAmrTableChunkTime[dashbo
 
   dashboardAmrTable.draw(false);
 
+  if (centrifugeClassification) {
+
+    if ($('#dashboardAmrTableColCheckbox1').is(':checked')) {
+    $('#dashboardAmrTableColCheckbox1').click();
+    }
+    if ($('#dashboardAmrTableColCheckbox2').is(':checked')) {
+    $('#dashboardAmrTableColCheckbox2').click();
+    }
+
+    $('#dashboardAmrTableColCheckbox1').prop('disabled', true);
+    $('#dashboardAmrTableColCheckbox2').prop('disabled', true);
+  }
+
   };
 
   function sortCounts(array) {
diff --git a/gui/UI/public/js/dashboardAmrDonut.js b/gui/UI/public/js/dashboardAmrDonut.js
index 60b3777..b4b640b 100755
--- a/gui/UI/public/js/dashboardAmrDonut.js
+++ b/gui/UI/public/js/dashboardAmrDonut.js
@@ -331,6 +331,7 @@ var dropdownList = [];
 
 function plotAmrDonut(data) {
 
+
 var dashboardAmrDonutPlotByListOptions = [{plotByProp:"drugClass",name:"Drug class"},{plotByProp:"resistanceMechanism",name:"Resistance mechanism"}]
 dashboardAmrDonutPlotByList = [];
 
@@ -652,5 +653,9 @@ for (taxa of plotData) {
 
           });
 
+          if (centrifugeClassification) {
+            $("#dashboardAmrDonutRow").hide();
+          };
+
 
 };
diff --git a/gui/UI/public/js/universal.js b/gui/UI/public/js/universal.js
index 05bfcc4..bc63e6b 100755
--- a/gui/UI/public/js/universal.js
+++ b/gui/UI/public/js/universal.js
@@ -293,8 +293,10 @@ socket.on('hb_ping', function(data){
     });
 
 socket.on('current-client-count', function(data){
-  console.log("current number of user: " + data);
-  $("#currentClientCount").text(data);
+  console.log("current number of user: " + data.clientCount);
+  $("#currentClientCount").text(data.clientCount);
+  let guiVersion = "MARTi GUI v" + data.guiVersion;
+  $("#currentGuiVersion").text(guiVersion);
     });
 
 socket.on('sample-removed', function(data){