From 0f928f89b1ef46a6a0f92eb1d7b6af5a6616ffff Mon Sep 17 00:00:00 2001
From: Dennis Piehl <piehld@gmail.com>
Date: Tue, 11 Feb 2025 15:12:50 -0500
Subject: [PATCH] update version number and HISTORY

---
 HISTORY.txt                    | 3 ++-
 azure-template-publish-job.yml | 4 ++--
 azure-template-tox-job.yml     | 6 +++---
 rcsb/db/cli/RepoLoadExec.py    | 8 +++++++-
 rcsb/db/cli/__init__.py        | 2 +-
 tox.ini                        | 3 +--
 6 files changed, 16 insertions(+), 10 deletions(-)

diff --git a/HISTORY.txt b/HISTORY.txt
index 2d94cef..92cea53 100644
--- a/HISTORY.txt
+++ b/HISTORY.txt
@@ -365,4 +365,5 @@
                      Update CI/CD testing to use python 3.10
  23-Dec-2024  V1.726 Skip integers that exceed max int32 in DataTransformFactory
   7-Jan-2025  V1.727 Handle "None" values in vrpt data
- 22-Jan-2025  V1.728 Add Imgs format option (for jpg/svg generation) to splitIdList()
\ No newline at end of file
+ 22-Jan-2025  V1.728 Add Imgs format option (for jpg/svg generation) to splitIdList()
+ 11-Feb-2025  V1.800 Removal of unused code and dependencies (MySQL, SQL, CockroachDB, CrateDB, and other accessory code snippets)
\ No newline at end of file
diff --git a/azure-template-publish-job.yml b/azure-template-publish-job.yml
index 33e4eda..08b5248 100644
--- a/azure-template-publish-job.yml
+++ b/azure-template-publish-job.yml
@@ -15,9 +15,9 @@ jobs:
 - job: ${{ format('publish_{0}_{1}', parameters.tox, parameters.os) }}
   pool:
     ${{ if eq(parameters.os, 'macos') }}:
-      vmImage: 'macOS-13'
+      vmImage: 'macOS-15'
     ${{ if eq(parameters.os, 'linux') }}:
-      vmImage: 'ubuntu-22.04'
+      vmImage: 'ubuntu-latest'
   dependsOn:
   - ${{ format('build_test_{0}_{1}', parameters.tox, parameters.os) }}
   condition: and(succeeded(), ne(variables['Build.Reason'], 'PullRequest'), eq(variables['Build.SourceBranch'], 'refs/heads/master'))
diff --git a/azure-template-tox-job.yml b/azure-template-tox-job.yml
index a63cc62..ec1b5c1 100644
--- a/azure-template-tox-job.yml
+++ b/azure-template-tox-job.yml
@@ -18,9 +18,9 @@ jobs:
     timeoutInMinutes: 0
     pool:
       ${{ if eq(parameters.os, 'macos') }}:
-        vmImage: "macOS-13"
+        vmImage: "macOS-15"
       ${{ if eq(parameters.os, 'linux') }}:
-        vmImage: "ubuntu-22.04"
+        vmImage: "ubuntu-latest"
 
     variables:
       - group: py-shared-variables
@@ -43,7 +43,7 @@ jobs:
           - bash: |
               set -e
               ls -la /Applications/Xcode*
-              sudo xcode-select --switch /Applications/Xcode_12.2.app/Contents/Developer
+              sudo xcode-select --switch /Applications/Xcode_16.app/Contents/Developer
               which g++
               c++ --version
             displayName: "setup Xcode"
diff --git a/rcsb/db/cli/RepoLoadExec.py b/rcsb/db/cli/RepoLoadExec.py
index d9d5476..00c7a7b 100644
--- a/rcsb/db/cli/RepoLoadExec.py
+++ b/rcsb/db/cli/RepoLoadExec.py
@@ -117,8 +117,14 @@ def main():
         help="Compare the number of loaded entries with the number expected by the holdings (for op 'pdbx_loader_check')"
     )
     parser.add_argument("--log_file_path", default=None, help="Path to runtime log file output.")
+    #
     # args for imgs workflow format
-    parser.add_argument("--incremental_update", default=False, action="store_true", help="Whether the process should look at timestamps (see --target_file_dir and --target_file_suffix) to find a delta list of ids to update. Default is a full update.")
+    parser.add_argument(
+        "--incremental_update",
+        default=False,
+        action="store_true",
+        help="Whether the process should look at timestamps (see --target_file_dir and --target_file_suffix) to find a delta list of ids to update. Default is a full update."
+    )
     parser.add_argument("--target_file_dir", default=None, help="Location of files for timestamp comparisons.")
     parser.add_argument("--target_file_suffix", default="", help="Suffix attached to pdb id for timestamp comparison file.")
     #
diff --git a/rcsb/db/cli/__init__.py b/rcsb/db/cli/__init__.py
index d6d26fc..c6ca5dc 100644
--- a/rcsb/db/cli/__init__.py
+++ b/rcsb/db/cli/__init__.py
@@ -2,4 +2,4 @@
 __author__ = "John Westbrook"
 __email__ = "john.westbrook@rcsb.org"
 __license__ = "Apache 2.0"
-__version__ = "1.728"
+__version__ = "1.800"
diff --git a/tox.ini b/tox.ini
index cf671ee..52e3ac8 100644
--- a/tox.ini
+++ b/tox.ini
@@ -16,7 +16,7 @@ fixture_path_1 = "rcsb/db/tests"
 test_path_1 = "rcsb/db/tests"
 test_path_2 = "rcsb/db/tests-mongo"
 test_path_3 = "rcsb/db/cli"
-test_path_4 = "rcsb/db/cli"  # TODO: is this a duplicate?
+#
 # These are placeholders valid source directories without tests files
 #test_path_2 = "rcsb/db/tests-validate"
 #test_path_3 = "rcsb/db/tests-mongo"
@@ -72,7 +72,6 @@ commands =
     {envpython} -m unittest discover -v --start-directory {[local_settings]test_path_1} --pattern "{[local_settings]test_pattern}"
     {envpython} -m unittest discover -v --start-directory {[local_settings]test_path_2} --pattern "{[local_settings]test_pattern}"
     {envpython} -m unittest discover -v --start-directory {[local_settings]test_path_3} --pattern "{[local_settings]test_pattern}"
-    {envpython} -m unittest discover -v --start-directory {[local_settings]test_path_4} --pattern "{[local_settings]test_pattern}"
     echo "Completed {envname}"
 
 #