diff --git a/R/rucrdtw-package.r b/R/rucrdtw-package.r index 53f1ac5..30aad1d 100644 --- a/R/rucrdtw-package.r +++ b/R/rucrdtw-package.r @@ -18,8 +18,8 @@ #' #' \code{vignette("using_rucrdtw", package = "rucrdtw")} -#' @references Rakthanmanon, Thanawin, Bilson Campana, Abdullah Mueen, Gustavo Batista, Brandon Westover, Qiang Zhu, Jesin Zakaria, and Eamonn Keogh. 2012. Searching and Mining Trillions of Time Series Subsequences Under Dynamic Time Warping. In Proceedings of the 18th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 262-70. ACM. doi:\href{http://dx.doi.org/10.1145/2339530.2339576}{10.1145/2339530.2339576}. -#' @references Giorgino, Toni (2009). Computing and Visualizing Dynamic Time Warping Alignments in R: The dtw Package. Journal of Statistical Software, 31(7), 1-24, doi:\href{http://dx.doi.org/10.18637/jss.v031.i07}{10.18637/jss.v031.i07}. +#' @references Rakthanmanon, Thanawin, Bilson Campana, Abdullah Mueen, Gustavo Batista, Brandon Westover, Qiang Zhu, Jesin Zakaria, and Eamonn Keogh. 2012. Searching and Mining Trillions of Time Series Subsequences Under Dynamic Time Warping. In Proceedings of the 18th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 262-70. ACM. doi:\doi{10.1145/2339530.2339576}. +#' @references Giorgino, Toni (2009). Computing and Visualizing Dynamic Time Warping Alignments in R: The dtw Package. Journal of Statistical Software, 31(7), 1-24, \doi{10.18637/jss.v031.i07}. #' @references UCR Suite Website: \url{http://www.cs.ucr.edu/~eamonn/UCRsuite.html} #' @seealso \link[dtw]{dtw-package} #' @keywords internal diff --git a/R/ucrdtw.R b/R/ucrdtw.R index 2db2d13..05ba378 100644 --- a/R/ucrdtw.R +++ b/R/ucrdtw.R @@ -50,7 +50,7 @@ summary.ucred <- function(object, ...){ #' \item \strong{prunedKeogh2:} Percentage of subsequences that were pruned based on the LB-Keogh-EC criterion. #' \item \strong{dtwCalc:} Percentage of subsequences for which the full DTW distance was calculated. #' } -#' @references Giorgino, Toni (2009). Computing and Visualizing Dynamic Time Warping Alignments in R: The dtw Package. Journal of Statistical Software, 31(7), 1-24, doi:\href{http://dx.doi.org/10.18637/jss.v031.i07}{10.18637/jss.v031.i07}. +#' @references Giorgino, Toni (2009). Computing and Visualizing Dynamic Time Warping Alignments in R: The dtw Package. Journal of Statistical Software, 31(7), 1-24, doi:\doi{10.18637/jss.v031.i07}. #' @examples #' #load example data #' data("synthetic_control") diff --git a/cran-comments.md b/cran-comments.md index e3494e4..fc388fc 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,3 +1,6 @@ +## Release summary +This is a minor update of the previous version it addresses a breaking change in roxygen2 that resulted in missing aliases for the package overview help file. +It also addresses CRAN check notes about removing an explicit C++11 specification. ## Test environments * Windows Server 2022 x64 (build 20348; on github-actions) R version 4.3.1 (2023-06-16 ucrt) diff --git a/inst/CITATION b/inst/CITATION index 0d149bb..6d72d74 100644 --- a/inst/CITATION +++ b/inst/CITATION @@ -3,7 +3,7 @@ citHeader("To cite rucrdtw in publications, please use:") year <- sub("-.*", "", meta$Date) note <- sprintf("R package version %s", meta$Version) -citEntry(entry = "Article", +bibentry(bibtype = "Article", title = "{rucrdtw}: Fast time series subsequence search in R", author = c(person("Philipp", "Boersch-Supan")), year = 2016, @@ -12,36 +12,24 @@ citEntry(entry = "Article", issue = "7", pages = "1--2", doi = "10.21105/joss.00100", - url = "http://doi.org/10.21105/joss.00100", + url = "http://doi.org/10.21105/joss.00100") - textVersion = - paste("Boersch-Supan (2016).", - "rucrdtw: Fast time series subsequence search in R.", - "The Journal of Open Source Software", - "URL http://doi.org/10.21105/joss.00100")) - -citEntry(entry = "InProceedings", +bibentry(bibtype = "InProceedings", title = "Searching and mining trillions of time series subsequences under dynamic time warping", - author = personList(c(person("Thanawin", "Rakthanmanon"), + author = c(person("Thanawin", "Rakthanmanon"), person("Bilson", "Campana"), person("Abdullah", "Mueen"), person("Gustavo", "Batista"), person("Brandon", "Westover"), person("Qiang", "Zhu"), person("Jesin", "Zakaria"), - person("Eamonn", "Keogh"))), + person("Eamonn", "Keogh")), booktitle = "Proceedings of the 18th {ACM} {SIGKDD} international conference on Knowledge discovery and data mining", year = "2012", pages = "262--270", organization = "ACM", doi = "10.1145/2339530.2339576", - url = "http://doi.org/10.1145/2339530.2339576", - - textVersion = - paste("Rakthanmanon et al. (2012).", - "Searching and mining trillions of time series subsequences under dynamic time warping.", - "SIGKDD", - "URL http://doi.org/10.1145/2339530.2339576") + url = "http://doi.org/10.1145/2339530.2339576" ) diff --git a/man/rucrdtw-package.Rd b/man/rucrdtw-package.Rd index 46b4c4a..1e6a86b 100644 --- a/man/rucrdtw-package.Rd +++ b/man/rucrdtw-package.Rd @@ -25,9 +25,9 @@ Examples of the functionality in this package are provided in the rucrdtw vignet \code{vignette("using_rucrdtw", package = "rucrdtw")} } \references{ -Rakthanmanon, Thanawin, Bilson Campana, Abdullah Mueen, Gustavo Batista, Brandon Westover, Qiang Zhu, Jesin Zakaria, and Eamonn Keogh. 2012. Searching and Mining Trillions of Time Series Subsequences Under Dynamic Time Warping. In Proceedings of the 18th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 262-70. ACM. doi:\href{http://dx.doi.org/10.1145/2339530.2339576}{10.1145/2339530.2339576}. +Rakthanmanon, Thanawin, Bilson Campana, Abdullah Mueen, Gustavo Batista, Brandon Westover, Qiang Zhu, Jesin Zakaria, and Eamonn Keogh. 2012. Searching and Mining Trillions of Time Series Subsequences Under Dynamic Time Warping. In Proceedings of the 18th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 262-70. ACM. doi:\doi{10.1145/2339530.2339576}. -Giorgino, Toni (2009). Computing and Visualizing Dynamic Time Warping Alignments in R: The dtw Package. Journal of Statistical Software, 31(7), 1-24, doi:\href{http://dx.doi.org/10.18637/jss.v031.i07}{10.18637/jss.v031.i07}. +Giorgino, Toni (2009). Computing and Visualizing Dynamic Time Warping Alignments in R: The dtw Package. Journal of Statistical Software, 31(7), 1-24, \doi{10.18637/jss.v031.i07}. UCR Suite Website: \url{http://www.cs.ucr.edu/~eamonn/UCRsuite.html} } diff --git a/man/ucrdtw_mv.Rd b/man/ucrdtw_mv.Rd index a224e5e..72d1070 100644 --- a/man/ucrdtw_mv.Rd +++ b/man/ucrdtw_mv.Rd @@ -44,5 +44,5 @@ query <- synthetic_control[5,] ucrdtw_mv(synthetic_control, query, 0.05, byrow = TRUE) } \references{ -Giorgino, Toni (2009). Computing and Visualizing Dynamic Time Warping Alignments in R: The dtw Package. Journal of Statistical Software, 31(7), 1-24, doi:\href{http://dx.doi.org/10.18637/jss.v031.i07}{10.18637/jss.v031.i07}. +Giorgino, Toni (2009). Computing and Visualizing Dynamic Time Warping Alignments in R: The dtw Package. Journal of Statistical Software, 31(7), 1-24, doi:\doi{10.18637/jss.v031.i07}. }