-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathreg_final.m
168 lines (156 loc) · 8.2 KB
/
reg_final.m
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
% Calculating motility metrics (in frequency space) across all movies and
% different treatments
% INPUT
% Just use the right file address storing all the motility files upon
% prompt
% OUTPUT
% Data file storing motility metrics for individual treatment windows
clear all;
% This address has to be changed accorrdingly
path = uigetdir('E:\\Spandan\\New_Analysis\\kymo_files');
files = dir(fullfile(path,'**','*.mat'));
files = struct2cell(files);
names = files(1,:);
for i = 1:length(names)
name = char(names(i));
if string(name(5)) == '9'
j = 1:3;
elseif string(name(5)) == '1' && string(name(6)) == '0'
j = 1:3;
elseif string(name(5)) == '1' && string(name(6)) == '9'
j = 1:3;
elseif string(name(5)) == '2' && string(name(6)) == '1'
j = 1:3;
elseif string(name(5)) == '2' && string(name(6)) == '8'
j = 1:3;
elseif string(name(5)) == '3' && string(name(6)) == '6'
j = 1:3;
elseif string(name(5)) == '1' && string(name(6)) == '4' && string(name(end-4)) == '2'
j = 1:2;
elseif string(name(5)) == '1' && string(name(6)) == '5' && string(name(end-4)) == '2'
j = 1:2;
elseif string(name(5)) == '2' && string(name(6)) == '0' && string(name(end-4)) == '2'
j = 1:2;
elseif string(name(5)) == '2' && string(name(6)) == '2' && string(name(end-4)) == '2'
j = 1:2;
elseif string(name(5)) == '2' && string(name(6)) == '9' && string(name(end-4)) == '2'
j = 1:2;
elseif string(name(5)) == '3' && string(name(6)) == '7' && string(name(end-4)) == '2'
j = 1:2;
else
j = 1;
end
n_ph = length(j);
for k = j(1):j(end)
if name(5) == '6'
re_len = 24.12;
save_name = 'reg_exp'+string(name(5))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '7'
re_len = 24.12;
save_name = 'reg_exp'+string(name(5))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '8'
re_len = 23.51;
save_name = 'reg_exp'+string(name(5))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '9'
re_len = 23.51;
save_name = 'reg_exp'+string(name(5))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '1' && name(6) == '0'
re_len = 24.11;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '1' && name(6) == '1'
re_len = 22.45;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '1' && name(6) == '2'
re_len = 22.45;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '1' && name(6) == '3'
re_len = 22.52;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '1' && name(6) == '4'
re_len = 24.81;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '1' && name(6) == '5'
re_len = 24.81;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '1' && name(6) == '6'
re_len = 24.20;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '1' && name(6) == '7'
re_len = 24.23;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '1' && name(6) == '8'
re_len = 24.50;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '1' && name(6) == '9'
re_len = 24.52;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '2' && name(6) == '0'
re_len = 23.66;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '2' && name(6) == '1'
re_len = 26.22;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '2' && name(6) == '2'
re_len = 24.51;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '2' && name(6) == '3'
re_len = 24.51;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '2' && name(6) == '4'
re_len = 24.51;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '2' && name(6) == '5'
re_len = 24.16;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '2' && name(6) == '6'
re_len = 24.15;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '2' && name(6) == '7'
re_len = 24.15;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '2' && name(6) == '8'
re_len = 20.44;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '2' && name(6) == '9'
re_len = 20.84;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '3' && name(6) == '0'
re_len = 22.30;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '3' && name(6) == '2'
re_len = 21.06;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '3' && name(6) == '3'
re_len = 24.84;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '3' && name(6) == '4'
re_len = 24.06;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '3' && name(6) == '5'
re_len = 24.92;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '3' && name(6) == '6'
re_len = 19.66;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '3' && name(6) == '7'
re_len = 17.78;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '3' && name(6) == '8'
re_len = 25.14;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '3' && name(6) == '9'
re_len = 24.36;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
elseif name(5) == '4' && name(6) == '0'
re_len = 22.35;
save_name = 'reg_exp'+string(name(5))+string(name(6))+'_p'+string(name(end-4))+string(k);
end
filepath = string(path)+'\\'+string(name);
v = load(filepath); % loading data file corresponding to the treatment window
vy = v.vy2avg; % Motility map of mean vy(dorsal-ventral)-motion as a function of time
clear v;
[per_power,fre,norm_peak,prom,width,ptot] = regularity_latest(vy,3,re_len,k,n_ph,0.04);
% Fs (frame-rate) = 3Hz. and f_span (frequency-span around the peak) = 0.04 Hz. have been chosen for analysis.
save(save_name, 'per_power','fre','norm_peak','prom','width','ptot');
end
end