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Stomach neuroendocrine cells not all classified under grouping term #2409

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dosumis opened this issue Jun 26, 2024 · 3 comments · Fixed by #2533
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Stomach neuroendocrine cells not all classified under grouping term #2409

dosumis opened this issue Jun 26, 2024 · 3 comments · Fixed by #2533
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@JABelfiore
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HCA/DCP Needed/useful for the Human Cell Atlas
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Milestone finishi...

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@dosumis
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dosumis commented Jun 26, 2024

See title
image

Presumably lack of axiom or misalignment of patterns
@dosumis
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dosumis commented Jun 26, 2024

CC @aleixpuigb - could you help with advice if needed?

@dosumis dosumis added the HCA/DCP Needed/useful for the Human Cell Atlas label Jun 26, 2024
@dosumis dosumis added this to the Sprint 22/07/24 milestone Jul 24, 2024
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dosumis commented Jul 24, 2024

Have taken a quick look. I think it would be sufficient to make all these cells 'part of' some 'epithelium of stomach.

@JABelfiore JABelfiore linked a pull request Aug 23, 2024 that will close this issue
Stomach neuroendocrine cells classed under grouping term #2519
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@JABelfiore JABelfiore linked a pull request Sep 6, 2024 that will close this issue
Fixes #2409 Stomach neuroendocrine cells now classified under grouping term #2533
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dosumis commented Oct 7, 2024

Evidence supports small numbers in duodenum. Less evidence on pancreas. We should extend the general term with text making this clear.

Some supporting refs. https://www.tandfonline.com/doi/abs/10.3109/00365528109181980 https://www.tandfonline.com/doi/abs/10.1080/00365521.1976.12097176

Also add stomach specific subclass.

@Caroline-99 Caroline-99 moved this from Done to In Progress in CL_wtgc_ticket_tracker Oct 7, 2024
JABelfiore added a commit that referenced this issue Oct 28, 2024
@JABelfiore @dosumis @Caroline-99
Fixes #2409 Stomach neuroendocrine cells now classified under groupin…
6ef435d 
…g term (#2533)

* Update cl-edit.owl

* G cells, EC cells and D cells under this category

* Update cl-edit.owl

Some more tweaks to fix hierarchy

* type g cell of stomach

Updated definition to reflect location and created new term for type g cell of stomach

* Refs update, logical def amend

* references added, def amended

* removed an axiom

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Co-authored-by: David Osumi-Sutherland <[email protected]>
Co-authored-by: CEastwood <[email protected]>
Co-authored-by: Caroline Eastwood <[email protected]>
@github-project-automation github-project-automation bot moved this from In Progress to Done in CL_wtgc_ticket_tracker Oct 28, 2024
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Labels
HCA/DCP Needed/useful for the Human Cell Atlas
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CL_wtgc_ticket_tracker
Status: Done
Milestone
Milestone finishing - 14/10/24
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@dosumis @JABelfiore