From 7225a44347aa795b5e72e9c203f3279b5a12d346 Mon Sep 17 00:00:00 2001 From: bvarner-ebi <95643797+bvarner-ebi@users.noreply.github.com> Date: Wed, 20 Sep 2023 13:11:45 +0100 Subject: [PATCH] Addresses #2155 Refresh imports 09-2023 --- src/ontology/imports/merged_import.owl | 52 +++++++++++++++++++++++--- src/patterns/definitions.owl | 4 +- 2 files changed, 49 insertions(+), 7 deletions(-) diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl index 4607aa1aa..94988d8e3 100644 --- a/src/ontology/imports/merged_import.owl +++ b/src/ontology/imports/merged_import.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2023-09-06") + +Annotation(owl:versionInfo "2023-09-20") Declaration(Class()) Declaration(Class()) @@ -13696,7 +13696,10 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(ObjectProperty()) @@ -14388,7 +14391,7 @@ AnnotationAssertion( "2023-03-03"^^xsd:date) AnnotationAssertion(rdfs:label "plural form") -# Annotation Property: (never_in_taxon) +# Annotation Property: (never in taxon) AnnotationAssertion( "tooth SubClassOf 'never in taxon' value 'Aves'") AnnotationAssertion(Annotation( "PMID:20973947") "S never_in_taxon T iff: S SubClassOf in_taxon only not T.") @@ -14726,9 +14729,8 @@ SubAnnotationPropertyOf( SubAnnotationPropertyOf( ) -# Annotation Property: (plural term) +# Annotation Property: () -AnnotationAssertion(rdfs:label "plural term") SubAnnotationPropertyOf( ) # Annotation Property: () @@ -113245,6 +113247,8 @@ SubClassOf( (root) AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "PMID:30365038") +AnnotationAssertion( "PMID:32761142") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "all") AnnotationAssertion( "NCBITaxon:1") @@ -224936,6 +224940,32 @@ AnnotationAssertion(rdfs:label " SubClassOf( ) SubClassOf( ) +# Class: (bronchial submucosal gland ciliated duct) + +AnnotationAssertion(Annotation( "PMID:30864819") "A ciliated duct part of a bronchial submucosal gland.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2023-05-02T08:07:56Z"^^xsd:dateTime) +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:8600010") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "bronchial submucosal gland ciliated duct") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (tracheal submucosal gland ciliated duct) + +AnnotationAssertion(Annotation( "PMID:30864819") "A ciliated duct part of a tracheal submucosal gland.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2023-05-02T08:08:14Z"^^xsd:dateTime) +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:8600011") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tracheal submucosal gland ciliated duct") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (submucosal gland acinus) AnnotationAssertion(Annotation( "PMID:17394068") Annotation( "PMID:17707699") Annotation( "PMID:25648514") Annotation( "PMID:30864819") "A spherical or tubular structure in a submucosal gland that produces and secretes mucus and other substances into the ducts leading to the surface epithelium.") @@ -224948,6 +224978,18 @@ AnnotationAssertion( "submucosal gland acinus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (submucosal gland ciliated duct) + +AnnotationAssertion(Annotation( "PMID:17707699") Annotation( "PMID:30864819") "A ciliated tubular structure in a submucosal gland connecting the submucosal gland collecting duct with the surface epithelium.") +AnnotationAssertion( ) +AnnotationAssertion( "2023-05-02T08:09:14Z"^^xsd:dateTime) +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:8600014") +AnnotationAssertion(rdfs:label "submucosal gland ciliated duct") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (bronchopulmonary segment) AnnotationAssertion(Annotation( "FMA:7312") Annotation( "PMID:18271171") Annotation( "PMID:33620799") Annotation( "doi:10.1016/j.mpaic.2008.09.022") "A discrete anatomical unit of the lung that is composed of a segmental bronchus and the lung tissue supplied by that bronchus. A bronchopulmonary segment exhibits a pyramidal shape, with its apex pointing towards the center of the lung and its base toward the pleural surface.") diff --git a/src/patterns/definitions.owl b/src/patterns/definitions.owl index 5ca53292b..05b4eb81d 100644 --- a/src/patterns/definitions.owl +++ b/src/patterns/definitions.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2023-09-06") + +Annotation(owl:versionInfo "2023-09-20")