From d72d1d734a72e9e109f0855385eef11ee4c90822 Mon Sep 17 00:00:00 2001
From: Ben Knoll <benknoll@umn.edu>
Date: Fri, 10 Jan 2020 16:12:17 -0600
Subject: [PATCH] Updated for version 0.3.0+ of mtap (#37)

---
 java/build.gradle                                               | 2 +-
 .../src/main/java/edu/umn/biomedicus/rtf/MTAPDocumentsSink.java | 2 +-
 java/src/main/java/edu/umn/biomedicus/rtf/RtfProcessor.java     | 2 +-
 .../java/edu/umn/biomedicus/utilities/PtbReaderProcessor.java   | 2 +-
 setup.py                                                        | 2 +-
 5 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/java/build.gradle b/java/build.gradle
index 3d8219f5..d1f87a27 100644
--- a/java/build.gradle
+++ b/java/build.gradle
@@ -88,7 +88,7 @@ dependencies {
 
     implementation group: 'javax.annotation', name: 'javax.annotation-api', version: '1.3.2'
     implementation group: 'org.slf4j', name: 'slf4j-api', version: slf4jVersion
-    implementation group: 'edu.umn.nlpie', name: 'mtap', version: '[0.1.0, )'
+    implementation group: 'edu.umn.nlpie', name: 'mtap', version: '[0.3.0, )'
     implementation group: 'edu.umn.biomedicus', name: 'biomedicus-tokenizer', version: '0.0.3'
     implementation group: 'org.rocksdb', name: 'rocksdbjni', version: '6.0.1'
     implementation group: 'org.apache.commons', name: 'commons-math3', version: '3.6.1'
diff --git a/java/src/main/java/edu/umn/biomedicus/rtf/MTAPDocumentsSink.java b/java/src/main/java/edu/umn/biomedicus/rtf/MTAPDocumentsSink.java
index 813f846a..b443f082 100644
--- a/java/src/main/java/edu/umn/biomedicus/rtf/MTAPDocumentsSink.java
+++ b/java/src/main/java/edu/umn/biomedicus/rtf/MTAPDocumentsSink.java
@@ -68,7 +68,7 @@ public void propertyChanged(String destinationName,
   }
 
   Document done(Event event, String documentName) {
-    Document document = event.addDocument(documentName, sb.toString());
+    Document document = event.createDocument(documentName, sb.toString());
     for (PropertyWatcher propertyWatcher : propertyWatchers) {
       propertyWatcher.done(document);
     }
diff --git a/java/src/main/java/edu/umn/biomedicus/rtf/RtfProcessor.java b/java/src/main/java/edu/umn/biomedicus/rtf/RtfProcessor.java
index dc5c2844..f70b30c6 100644
--- a/java/src/main/java/edu/umn/biomedicus/rtf/RtfProcessor.java
+++ b/java/src/main/java/edu/umn/biomedicus/rtf/RtfProcessor.java
@@ -106,7 +106,7 @@ public void process(@NotNull Event event, @NotNull JsonObject params, @NotNull J
         while ((code = bis.read()) != -1) {
           sb.append((char) code);
         }
-        event.addDocument(outputDocumentName, sb.toString());
+        event.createDocument(outputDocumentName, sb.toString());
       }
     } catch (IOException e) {
       throw new IllegalStateException(e);
diff --git a/java/src/main/java/edu/umn/biomedicus/utilities/PtbReaderProcessor.java b/java/src/main/java/edu/umn/biomedicus/utilities/PtbReaderProcessor.java
index 8c5bf860..ec7f77a5 100644
--- a/java/src/main/java/edu/umn/biomedicus/utilities/PtbReaderProcessor.java
+++ b/java/src/main/java/edu/umn/biomedicus/utilities/PtbReaderProcessor.java
@@ -89,7 +89,7 @@ public void process(@NotNull Event event,
       throw new IllegalStateException(e);
     }
 
-    Document target = event.addDocument(targetDocumentName, documentBuilder.toString());
+    Document target = event.createDocument(targetDocumentName, documentBuilder.toString());
     String sentencesIndex = (String) params.getOrDefault("sentences_index", "sentences");
     target.addLabels(sentencesIndex, true, sentences);
     String posTagsIndex = (String) params.getOrDefault("pos_tags_index", "pos_tags");
diff --git a/setup.py b/setup.py
index 8058141b..c7bfb90d 100644
--- a/setup.py
+++ b/setup.py
@@ -112,7 +112,7 @@ def run_tests(self):
         'biomedicus': ['defaultConfig.yml', 'biomedicus-all.jar']
     },
     install_requires=[
-        'mtap',
+        'mtap>=0.3.0',
         'numpy',
         'pyyaml',
         'regex',