NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(plot,methytmle)
export(.methytmle)
export(fdr_msa)
export(methyheat)
export(methyvim)
export(methyvolc)
export(vim)
exportClasses(methytmle)
import(BiocGenerics)
importClassesFrom(S4Vectors,Annotated)
importClassesFrom(S4Vectors,Vector)
importClassesFrom(SummarizedExperiment,RangedSummarizedExperiment)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importClassesFrom(minfi,GenomicRatioSet)
importFrom(BiocGenerics,start)
importFrom(BiocParallel,DoparParam)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpprogressbar)
importFrom(BiocParallel,register)
importFrom(GenomeInfoDb,seqnames)
importFrom(IRanges,ranges)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowRanges)
importFrom(bumphunter,clusterMaker)
importFrom(cluster,pam)
importFrom(doFuture,registerDoFuture)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange)
importFrom(dplyr,select)
importFrom(dplyr,slice)
importFrom(dplyr,transmute)
importFrom(future,multiprocess)
importFrom(future,plan)
importFrom(future,sequential)
importFrom(ggplot2,aes)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlab)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylab)
importFrom(ggsci,scale_fill_gsea)
importFrom(gridExtra,grid.arrange)
importFrom(gtools,quantcut)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,topTable)
importFrom(methods,callNextMethod)
importFrom(methods,setClass)
importFrom(methods,setMethod)
importFrom(minfi,getBeta)
importFrom(minfi,getM)
importFrom(stats,cor)
importFrom(stats,p.adjust)
importFrom(superheat,superheat)
importFrom(tmle,tmle)