Thesis.tex

%==============================================%
%					       %
%	      <<LaTeX Source Code>>	       %
%					       %
%		 Nick Miladinovic		       %
%					       %
%	Dept. of Physics and Astronomy	       %
%		  McMaster Uni		       %
%					       %
%     Email: Nickcvic@gmail.com     %
%					       %
%	        (April 2016) 	       %
%					       %
%==============================================%


\documentclass[ 12pt,
		twoside,%oneside
		letterpaper, 
		openright
	      ]{book}

%
%
%
%__________PACKAGES_________
\usepackage{graphicx}
\usepackage{makeidx} % SEE \makeindex before \begin{document}
\usepackage[tmargin=1.5in,bmargin=1in,lmargin=1.5in,rmargin=1.5in]{geometry}  %For TWOSIDE TO WORK, COMMENT OUT THIS LINE!
\usepackage{amsmath}
\usepackage{amssymb}
\usepackage{sidecap}
\usepackage{enumitem}
\usepackage{simplewick}
%\usepackage{subfig}  %\def\subfigcapskip{10pt}
%\usepackage{feynmf}
\usepackage{feynmp}   \unitlength = .075mm \DeclareGraphicsRule{*}{mps}{*}{} % USE>> mpost Feynman_Graphs.mp TO GENERATE GRAPHS
%\usepackage{sparticles}
%\usepackage{pstricks \psset{unit=.5mm}
%\usepackage{wrapfig} 
\usepackage{comment}
\usepackage[table]{xcolor}  %\cellcolor[gray]{0.9} 
%\usepackage{multirow}
\usepackage{soul}
\usepackage{caption}   \captionsetup[figure]{labelfont=bf}
\usepackage{subcaption}
\usepackage{float}  % To fix the position of figures using [H]
%\usepackage{todo} 
\usepackage{bm}
\usepackage{braket}
\usepackage[
	 colorlinks=true
	,urlcolor=violet
	,anchorcolor=blue
	,citecolor=magenta
	,filecolor=blue
	,linkcolor=blue
	,menucolor=blue
	,pagecolor=blue
	,linktocpage=true
	,pdfproducer=medialab
	%,hidelinks
]{hyperref}
\usepackage[square,numbers]{natbib}
%\usepackage{chapterbib} % To have the references at the end of each Chapter. Needs running bibtex not only for FILE.bib but also Chapter01.bib etc.
\usepackage[titletoc]{appendix}
\usepackage{fancyhdr}
%\usepackage[pagestyles]{titlesec}
%\usepackage{lipsum}
\usepackage[Lenny]{fncychap} %Options: Sonny, Lenny, Glenn, Conny, Rejne, Bjarne, Bjornstrup
	%\ChNumVar{\fontsize{76}{80}\usefont{OT1}{pzc}{m}{n}\selectfont} %ONLY FOR "Bjornstrup"
	%\ChTitleVar{\raggedright\Large\sffamily\bfseries} %ONLY FOR "Bjornstrup"
\usepackage{tocloft} %[titles]
%\usepackage[tc]{titlepic}
%\usepackage[center]{titlesec}
\usepackage{setspace} 
\usepackage{etoolbox} 
\usepackage{lastpage}
\usepackage[fit]{truncate} 
\usepackage{todonotes} % TO ADD NOTES IN YOUR DRAFT, e.g.,\todo[linecolor=red!70!white, backgroundcolor=blue!20!white,bordercolor=red]{CITE A COLOURFUL PAPER}

%To Have Bibliography at the end each Chapter:	
	%\usepackage{chapterbib}
	% DO NOT forget to add \bibliographystyle{plainnat}  \bibliography{../Bibliography} to the end of each chapter.
	%Visit: http://texdoc.net/texmf-dist/doc/latex/cite/chapterbib.pdf

\usepackage{calligra} % FOR calligraphic font
\usepackage[T1]{fontenc}
\usepackage{siunitx} %For SI Units,...  

\definecolor{light-gray}{gray}{0.95}
\usepackage{cancel}
\usepackage{soul} %To strikethrough using \st{TEXT} 
		  %\setulcolor{red}  %set underlining color
		  \setstcolor{red}   %set overstriking color
		  %\sethlcolor{blue} %set highlighting color
		  \setul{1ex}{0.2ex} %set line thickness
\newcommand{\blue}[1]{\textcolor{blue}{#1}}  %Use \blue{TEXT} 
\newcommand{\red}[1]{\textcolor{red}{#1}}  %Use \red{TEXT}

%\usepackage[bottom]{footmisc}

%___________________________
%
%
%
%
%
%
%___________TWEAKS__________

\makeindex

%TITLE & AUTHOR
\input{./TeX-Files/Author_and_Title.tex}

%___________________________
%
%
%          
%
%
%=================================================
\begin{document}
%
%
%
%
%______FRONT_MATTER_______               

\frontmatter

\thispagestyle{empty}
\begin{flushleft}
	\vspace*{\fill}
	\begin{center}
	{\bfseries \MakeUppercase \ThesisTitle}
	\end{center}
	\vspace*{\fill}
	\vspace*{\fill}
\end{flushleft}

\newpage  

\setcounter{page}{1}
\begin{titlepage}
	\vspace*{\fill}
	\begin{center}
	{\large\bfseries \MakeUppercase \ThesisTitle}

	\vspace{1cm}

	{By}\\ 

	\vspace{1cm}

	{{\bfseries \MakeUppercase\ThesisAuthor}, \AuthorsPreviousDegreesFirstPage}\\

 	\vspace{4cm}

	{A Thesis}\\
	{Submitted to the School of Graduate Studies}\\
	{in Partial Fulfilment of the Requirements}\\
	{for the Degree}\\ 
	{\ThesisDegreeLong}

 	\vspace{4cm}
	\vspace*{\fill}

	{\ThesisInstitution}\\ 
	{\copyright Copyright by \ThesisAuthor, \ThesisYear}
	\end{center}
	\vspace*{\fill}
\end{titlepage}


\pagestyle{plain} %\pagestyle{fancy} 
\cfoot{\thepage} \lhead{}\chead{}%\rhead{}

\newpage
\begin{minipage}[l]{\textwidth}
	\begin{tabular}{p{8.5cm} l}
		  {\MakeUppercase\ThesisDegreeLong} (\ThesisYear)
		& \ThesisInstitution
		\\
		  (Physics)
		& Hamilton, Ontario
	\end{tabular}
	
	\vspace{1.5cm}

	\begin{tabular}{l p{.6\textwidth} c}
		{ TITLE:} & \ThesisTitle
		\\ \\
		{ AUTHOR:} & \ThesisAuthor, \AuthorsPreviousDegrees
		\\ \\
		{ THESIS ADVISER:} & \ThesisAdviser
		\\ \\
		{ NUMER OF PAGES:} & \pageref{lastoffront} , \pageref{LastPage}
	\end{tabular}
\end{minipage}
\newpage       

\input{./TeX-Files/Abstract.tex} 
\newpage         
\input{./TeX-Files/Acknowledgements.tex}    
\newpage
\input{./TeX-Files/Dedication.tex}  
\newpage
\input{./TeX-Files/Preface.tex}
     
\newpage     
\phantomsection
\addcontentsline{toc}{chapter}{Table of Contents} 
\tableofcontents 

\cleardoublepage
\phantomsection
\addcontentsline{toc}{chapter}{List of Figures}           
\listoffigures 

\cleardoublepage
\phantomsection 
\addcontentsline{toc}{chapter}{List of Tables}               
\listoftables   

  
\label{lastoffront} %FOR COUNTING PAGES...  

%___________________________           
%
%
%
%
%______MAIN_MATTER________
\mainmatter

%MAIN MATTER PAGESTYLE
\pagestyle{fancy}
\fancyhead[LO]{\truncate{.95\headwidth}{\leftmark}} %{\thechapter}
\fancyhead[RO]{}
\fancyhead[LE]{\ThesisInstitution}
\fancyhead[RE]{\ShortThesisAuthor \,\,-- \ThesisDegreeShort}
\fancyfoot[C]{\thepage}

%CHAPTERS
\doublespacing %\singlespacing


\begin{fmffile}{Feynman_Graphs}  %FOR FEYNMAN DIAGRAMS

\input{./TeX-Files/Chapter_1.tex}
\input{./TeX-Files/Chapter_2.tex}
\input{./TeX-Files/Chapter_3.tex}
\input{./TeX-Files/Chapter_4.tex}
\input{./TeX-Files/Chapter_5.tex}
\input{./TeX-Files/Chapter_6.tex}

\singlespacing

%APPENDICES
\begin{appendices}
\appendixpage
\noappendicestocpagenum
\input{./TeX-Files/Appendix_I.tex}
\input{./TeX-Files/Appendix_II.tex} 
%\input{./TeX-Files/Appendix_III.tex} 
%\input{./TeX-Files/Appendix_IV.tex} 
\end{appendices}


\end{fmffile} %FOR FEYNMAN DIAGRAMS

%___________________________
%
%
%
%
%
%_______BACK_MATTER_______
\backmatter

\singlespace %TO AVOID DOUBLE-SPACE BIBLIOGRAPHY & INDEX!

%BIBLIOGRAPHY and INDEX PAGESTYLE
\pagestyle{plain} 
\cfoot{\thepage} \lhead{}\chead{}%\rhead{} 

%BIBLIOGRAPHY
\phantomsection
\addcontentsline{toc}{chapter}{Bibliography}
\bibliography{Thesis}
\bibliographystyle{apsrev4-1}%{apsrev4-1}%{amsplain}%{ieeetr}%{unsrtnat}%{plainnat}

%INDEX
\newpage
\phantomsection
\addcontentsline{toc}{chapter}{Index}
\printindex



%___________________________
%
%
%
%
\end{document}
%=================================================