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Hi the as.loom function is not converting my Seurat object to loom and running into an error message. Is there a reason why this is happening?
> dge_E.loom <- as.loom(dge_Epithelial, filename = "dge_E.loom", verbose = FALSE) Transposing input data: loom file will show input columns (cells) as rows and input rows (features) as columns This is to maintain compatibility with other loom tools Adding: CellID Adding: Gene Adding: vst_mean Adding: vst_variance Adding: vst_variance_expected Adding: vst_variance_standardized Adding: vst_variable Adding: Selected Adding: orig_ident Adding: nCount_RNA Adding: nFeature_RNA Adding: percent_mt Adding: RNA_snn_res_0_8 Error in if (size == Inf) { : missing value where TRUE/FALSE needed
The text was updated successfully, but these errors were encountered:
I have the same problem and it is not due to the issue of NA values in metadata column
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I am having the same problem
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Hi the as.loom function is not converting my Seurat object to loom and running into an error message. Is there a reason why this is happening?
The text was updated successfully, but these errors were encountered: