can't install loomR (non-zero exit status or not available for R v3.6.0)

[w2niva]

Hi,
I am trying to install loomR with no luck. Even to install 'hdf5r', I had to use CRAN link. But I was able to install it. I have used commands provided in the tutorial. I have already seen the other similar issue in resolved issues. I am not aware of ways to update temp files etc.

devtools::install_github(repo = "mojaveazure/loomR", ref = "develop")
Downloading GitHub repo mojaveazure/loomR@develop
√ checking for file 'C:\Users\vg272\AppData\Local\Temp\RtmpgPXRFs\remotes26101518284\mojaveazure-loomR-1eca16a/DESCRIPTION' ...

• preparing 'loomR':
  √ checking DESCRIPTION meta-information ...
• checking for LF line-endings in source and make files and shell scripts
• checking for empty or unneeded directories
• building 'loomR_0.2.1.9000.tar.gz'

Installing package into ‘C:/Users/vg272/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)

• installing source package 'loomR' ...
  ** using staged installation
  ** R
  ** byte-compile and prepare package for lazy loading
  Error: (converted from warning) package 'hdf5r' was built under R version 3.6.1
  Execution halted
  ERROR: lazy loading failed for package 'loomR'
• removing 'C:/Users/vg272/Documents/R/win-library/3.6/loomR'
  Error: Failed to install 'loomR' from GitHub:
  (converted from warning) installation of package ‘C:/Users/vg272/AppData/Local/Temp/RtmpgPXRFs/file261020e35d55/loomR_0.2.1.9000.tar.gz’ had non-zero exit status

devtools::install_github(repo = "mojaveazure/loomR", ref = "develop")
Downloading GitHub repo mojaveazure/loomR@develop
√ checking for file 'C:\Users\vg272\AppData\Local\Temp\RtmpgPXRFs\remotes2610dde2b81\mojaveazure-loomR-1eca16a/DESCRIPTION' ...

• preparing 'loomR':
  √ checking DESCRIPTION meta-information ...
• checking for LF line-endings in source and make files and shell scripts
• checking for empty or unneeded directories
• building 'loomR_0.2.1.9000.tar.gz'

Installing package into ‘C:/Users/vg272/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)

• installing source package 'loomR' ...
  ** using staged installation
  ** R
  ** byte-compile and prepare package for lazy loading
  Error: (converted from warning) package 'hdf5r' was built under R version 3.6.1
  Execution halted
  ERROR: lazy loading failed for package 'loomR'
• removing 'C:/Users/vg272/Documents/R/win-library/3.6/loomR'
  Error: Failed to install 'loomR' from GitHub:
  (converted from warning) installation of package ‘C:/Users/vg272/AppData/Local/Temp/RtmpgPXRFs/file2610611c29cd/loomR_0.2.1.9000.tar.gz’ had non-zero exit status

library(loomR)
Error in library(loomR) : there is no package called ‘loomR’
install.packages("https://github.com/mojaveazure/loomR.git")
Installing package into ‘C:/Users/vg272/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
Warning in install.packages :
package ‘https://github.com/mojaveazure/loomR.git’ is not available (for R version 3.6.0)

sessionInfo()
R version 3.6.0 (2019-04-26)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 17763)

Matrix products: default

Random number generation:
RNG: Mersenne-Twister
Normal: Inversion
Sample: Rounding

locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C LC_TIME=English_United States.1252

attached base packages:
[1] stats graphics grDevices utils datasets methods base

other attached packages:
[1] bdsmatrix_1.3-3

loaded via a namespace (and not attached):
[1] Rcpp_1.0.2 rstudioapi_0.10 magrittr_1.5 usethis_1.5.1 devtools_2.1.0 pkgload_1.0.2 R6_2.4.0
[8] rlang_0.4.0 tools_3.6.0 pkgbuild_1.0.5 sessioninfo_1.1.1 cli_1.1.0 withr_2.1.2 remotes_2.1.0
[15] assertthat_0.2.1 digest_0.6.20 rprojroot_1.3-2 crayon_1.3.4 processx_3.4.1 callr_3.3.1 fs_1.3.1
[22] ps_1.3.0 curl_4.0 testthat_2.2.1 glue_1.3.1 memoise_1.1.0 compiler_3.6.0 desc_1.2.0
[29] backports_1.1.4 prettyunits_1.0.2

Any help would be appreciated. Also, is there a direct command to convert 10X matrices to loom file? Something similar to loomPy.

[zhangwl]

i have the same problem (had non-zero exit status) and can't install loomR (R v3.6.1)

######################################################
Downloading GitHub repo mojaveazure/loomR@master
checking for file 'C:\Users\jiaoyuchen\AppData\Local\Temp\Rtmp6j1HEo\remotes32943a396e18\mojaveazure-loomR-df0144b/DESCRIPTION' ...√ checking for file 'C:\Users\jiaoyuchen\AppData\Local\Temp\Rtmp6j1HEo\remotes32943a396e18\mojaveazure-loomR-df0144b/DESCRIPTION' (367ms)

• preparing 'loomR':
  √ checking DESCRIPTION meta-information ...
• checking for LF line-endings in source and make files and shell scripts
• checking for empty or unneeded directories
• building 'loomR_0.2.0.tar.gz'

• installing source package 'loomR' ...
  ** using staged installation
  ** R
  ** byte-compile and prepare package for lazy loading
  Error: (converted from warning) package 'R6' was built under R version 3.6.2
  Execution halted
  ERROR: lazy loading failed for package 'loomR'
• removing 'C:/Program Files/R/R-3.6.1/library/loomR'
  Error: Failed to install 'loomR' from GitHub:
  (converted from warning) installation of package ‘C:/Users/JIAOYU~1/AppData/Local/Temp/Rtmp6j1HEo/file329434e728fd/loomR_0.2.0.tar.gz’ had non-zero exit status