- phd_v3 (30/07/2020 update from work + intake + jupyter-lab)
Installation:
conda create -n phd_v3
conda activate phd_v3
# Need to install first esmpy separatly (https://github.com/JiaweiZhuang/xESMF/issues/47#issuecomment-582421822)
# It looks like it doesn't matter anymore about the order
conda install esmpy
conda install xesmf dask
# Need matplotlib<=3.2 for Proplot (https://github.com/lukelbd/proplot/issues/210)
# Need nodejs>=10.0 for installing dask extension in jupyter-lab
# xarray and other packages already installed with dask previously
conda install jupyter jupyterlab "nodejs>=10.0" netcdf4 proplot cartopy "matplotlib<=3.2" intake-esm python-graphviz nbresuse nc-time-axis
# Fot testing xESMF
pip install pytest
pytest -v --pyargs xesmf #all need to pass
# For automatically have other environments available
# https://github.com/Anaconda-Platform/nb_conda_kernels
# https://stackoverflow.com/questions/39604271/conda-environments-not-showing-up-in-jupyter-notebook
conda install nb_conda_kernels
# To get %matplotlib notebook working
# https://stackoverflow.com/questions/51922480/javascript-error-ipython-is-not-defined-in-jupyterlab
# https://github.com/matplotlib/ipympl
conda install ipympl
# Configure jupyter
# https://jupyter-notebook.readthedocs.io/en/stable/public_server.html
jupyter notebook --generate-config
gvim ~/.jupyter/jupyter_notebook_config.py
# Send report to Anaconda in case of errors
conda config --set report_errors true
# https://stackoverflow.com/questions/42848130/why-i-cant-access-remote-jupyter-notebook-server
c.NotebookApp.allow_origin = '*'
c.NotebookApp.ip = '0.0.0.0'
c.NotebookApp.port = 7227
c.NotebookApp.open_browser = False
# Launch jupyter lab
jupyter lab
# SSH tunnel
ssh -L 7227:ciclad14:7227 [email protected]
# Finally these jypter lab extensions are not that stable...
# Monitor extension
# https://github.com/jtpio/jupyterlab-system-monitor
jupyterlab-system-monitor
# Code formatter
# https://jupyterlab-code-formatter.readthedocs.io/en/latest/installation.html
conda install nodejs
jupyter labextension install @ryantam626/jupyterlab_code_formatter
conda install -c conda-forge jupyterlab_code_formatter
jupyter serverextension enable --py jupyterlab_code_formatter
conda install black isort