requirements.txt

#
# This file is autogenerated by pip-compile with Python 3.11
# by the following command:
#
#    pip-compile requirements.in
#
annotated-types==0.6.0
    # via pydantic
astor==0.8.1
    # via formulaic
atpublic==4.0
    # via flufl-lock
attrs==23.1.0
    # via niworkflows
bids-validator==1.13.1
    # via pybids
certifi==2023.7.22
    # via requests
chardet==5.2.0
    # via -r requirements.in
charset-normalizer==3.3.2
    # via requests
ci-info==0.3.0
    # via etelemetry
click==8.1.7
    # via
    #   niflow-nipype1-workflows
    #   nipype
    #   pybids
contourpy==1.2.0
    # via matplotlib
cycler==0.12.1
    # via matplotlib
decorator==4.4.2
    # via networkx
defusedxml==0.7.1
    # via odfpy
docopt==0.6.2
    # via num2words
et-xmlfile==1.1.0
    # via openpyxl
etelemetry==0.3.1
    # via nipype
fasteners==0.19
    # via -r requirements.in
filelock==3.13.1
    # via nipype
flufl-lock==8.0.2
    # via -r requirements.in
fmriprep @ git+https://github.com/HippocampusGirl/fmriprep@20.2.7+halfpipe.2
    # via -r requirements.in
fonttools==4.44.0
    # via matplotlib
formulaic==0.2.4
    # via pybids
future==0.18.3
    # via niflow-nipype1-workflows
h5py==3.10.0
    # via nitransforms
idna==3.4
    # via requests
imageio==2.31.5
    # via
    #   -r requirements.in
    #   scikit-image
indexed-gzip==1.8.7
    # via
    #   fmriprep
    #   smriprep
inflect==7.0.0
    # via -r requirements.in
inflection==0.5.1
    # via -r requirements.in
interface-meta==1.3.0
    # via formulaic
isodate==0.6.1
    # via rdflib
jinja2==3.1.2
    # via niworkflows
joblib==1.3.2
    # via
    #   nilearn
    #   scikit-learn
kiwisolver==1.4.5
    # via matplotlib
line-profiler==4.1.2
    # via -r requirements.in
llvmlite==0.41.1
    # via numba
lockfile==0.12.2
    # via smriprep
looseversion==1.3.0
    # via nipype
lxml==4.9.3
    # via
    #   nilearn
    #   prov
    #   svgutils
markupsafe==2.1.3
    # via jinja2
marshmallow==3.20.1
    # via
    #   -r requirements.in
    #   marshmallow-dataclass
    #   marshmallow-enum
    #   marshmallow-oneofschema
marshmallow-dataclass==8.6.0
    # via -r requirements.in
marshmallow-enum==1.5.1
    # via -r requirements.in
marshmallow-oneofschema==3.0.1
    # via -r requirements.in
matplotlib==3.8.1
    # via
    #   -r requirements.in
    #   nitime
    #   niworkflows
    #   seaborn
    #   smriprep
    #   tedana
more-itertools==10.1.0
    # via -r requirements.in
mypy-extensions==1.0.0
    # via typing-inspect
networkx==2.5.1
    # via
    #   fmriprep
    #   nipype
    #   prov
    #   scikit-image
nibabel==5.1.0
    # via
    #   -r requirements.in
    #   fmriprep
    #   nilearn
    #   nipype
    #   nitransforms
    #   niworkflows
    #   pybids
    #   sdcflows
    #   smriprep
    #   tedana
niflow-nipype1-workflows==0.0.5
    # via sdcflows
nilearn==0.10.2
    # via
    #   fmriprep
    #   niworkflows
    #   smriprep
    #   tedana
nipype==1.8.6
    # via
    #   -r requirements.in
    #   fmriprep
    #   niflow-nipype1-workflows
    #   niworkflows
    #   sdcflows
    #   smriprep
nitime==0.10.2
    # via fmriprep
nitransforms==20.0.0rc5
    # via
    #   fmriprep
    #   niworkflows
niworkflows==1.3.10
    # via
    #   -r requirements.in
    #   fmriprep
    #   sdcflows
    #   smriprep
num2words==0.5.13
    # via pybids
numba==0.58.1
    # via -r requirements.in
numpy==1.26.0
    # via
    #   -r requirements.in
    #   contourpy
    #   fmriprep
    #   formulaic
    #   h5py
    #   imageio
    #   matplotlib
    #   nibabel
    #   nilearn
    #   nipype
    #   nitime
    #   nitransforms
    #   niworkflows
    #   numba
    #   pandas
    #   patsy
    #   pybids
    #   pywavelets
    #   scikit-image
    #   scikit-learn
    #   scipy
    #   sdcflows
    #   seaborn
    #   smriprep
    #   statsmodels
    #   tedana
    #   tifffile
odfpy==1.4.1
    # via -r requirements.in
openpyxl==3.1.2
    # via -r requirements.in
packaging==23.2
    # via
    #   etelemetry
    #   marshmallow
    #   matplotlib
    #   nibabel
    #   nilearn
    #   nipype
    #   niworkflows
    #   scikit-image
    #   setuptools-scm
    #   smriprep
    #   statsmodels
pandas==2.1.2
    # via
    #   -r requirements.in
    #   fmriprep
    #   formulaic
    #   nilearn
    #   niworkflows
    #   pybids
    #   seaborn
    #   statsmodels
    #   tedana
parse==1.19.1
    # via -r requirements.in
patsy==0.5.3
    # via
    #   -r requirements.in
    #   statsmodels
pillow==10.1.0
    # via
    #   imageio
    #   matplotlib
    #   scikit-image
pint==0.22
    # via -r requirements.in
prov==2.0.0
    # via nipype
psutil==5.9.6
    # via
    #   -r requirements.in
    #   flufl-lock
    #   fmriprep
pybids==0.14.1
    # via
    #   -r requirements.in
    #   fmriprep
    #   niworkflows
    #   sdcflows
    #   smriprep
    #   templateflow
pydantic==2.4.2
    # via inflect
pydantic-core==2.10.1
    # via pydantic
pydot==1.4.2
    # via nipype
pympler==1.0.1
    # via -r requirements.in
pyparsing==3.1.1
    # via
    #   matplotlib
    #   pydot
    #   rdflib
pyrsistent==0.20.0
    # via -r requirements.in
python-dateutil==2.8.2
    # via
    #   matplotlib
    #   nipype
    #   pandas
    #   prov
pytz==2023.3.post1
    # via pandas
pywavelets==1.4.1
    # via scikit-image
pyyaml==6.0.1
    # via
    #   fmriprep
    #   niworkflows
    #   smriprep
rdflib==7.0.0
    # via
    #   nipype
    #   prov
requests==2.31.0
    # via
    #   -r requirements.in
    #   etelemetry
    #   fmriprep
    #   nilearn
    #   templateflow
scikit-image==0.19.3
    # via niworkflows
scikit-learn==1.3.2
    # via
    #   nilearn
    #   niworkflows
    #   tedana
scipy==1.11.3
    # via
    #   -r requirements.in
    #   formulaic
    #   nilearn
    #   nipype
    #   nitime
    #   nitransforms
    #   niworkflows
    #   pybids
    #   scikit-image
    #   scikit-learn
    #   statsmodels
    #   tedana
sdcflows @ git+https://github.com/HippocampusGirl/sdcflows@1.3.3+halfpipe.1
    # via
    #   -r requirements.in
    #   fmriprep
seaborn==0.13.0
    # via
    #   -r requirements.in
    #   niworkflows
setuptools-scm==8.0.4
    # via -r requirements.in
simplejson==3.19.2
    # via nipype
six==1.16.0
    # via
    #   isodate
    #   patsy
    #   python-dateutil
smriprep @ git+https://github.com/HippocampusGirl/smriprep@0.7.2+halfpipe.2
    # via
    #   -r requirements.in
    #   fmriprep
sqlalchemy==1.3.24
    # via pybids
stackprinter==0.2.10
    # via -r requirements.in
statsmodels==0.14.0
    # via -r requirements.in
svgutils==0.3.1
    # via
    #   -r requirements.in
    #   niworkflows
tabulate==0.9.0
    # via -r requirements.in
tedana==0.0.9a1
    # via fmriprep
templateflow==0.8.1
    # via
    #   -r requirements.in
    #   fmriprep
    #   niworkflows
    #   sdcflows
    #   smriprep
threadpoolctl==3.2.0
    # via
    #   -r requirements.in
    #   scikit-learn
    #   tedana
tifffile==2023.9.26
    # via scikit-image
toml==0.10.2
    # via fmriprep
tqdm==4.66.1
    # via templateflow
traits==6.3.2
    # via nipype
transforms3d==0.4.1
    # via niworkflows
typing-extensions==4.8.0
    # via
    #   inflect
    #   pint
    #   pydantic
    #   pydantic-core
    #   setuptools-scm
    #   typing-inspect
typing-inspect==0.9.0
    # via marshmallow-dataclass
tzdata==2023.3
    # via pandas
urllib3==2.0.7
    # via requests
wheel==0.41.3
    # via -r requirements.in
wrapt==1.16.0
    # via formulaic
xlrd==2.0.1
    # via -r requirements.in
xlsxwriter==3.1.9
    # via -r requirements.in

# The following packages are considered to be unsafe in a requirements file:
# setuptools