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Issues list

computeCellDistance' is not an exported object from 'namespace:CellChat'
#213 opened Aug 10, 2024 by pickingastar
2 😕 1
plotGeneExpression, dot plot error: Error in levels<-(*tmp*, value = as.character(levels)) : factor level is duplicated
#106 opened Mar 15, 2024 by gebdu
😕 1
problems in "Comparison analysis of multiple datasets with different cell type compositions"
#8 opened Nov 10, 2023 by GGboy-Zzz
1
runCellChatApp not found
#9 opened Nov 13, 2023 by tyleryasaka
1
merging several spatial datasets
#10 opened Nov 14, 2023 by daymecita
6
Replicating the Ligand-Receptor Interaction Explorer for v2
#11 opened Nov 14, 2023 by luxhexmaster
1
Working with multiple phenotypes in the same Seurat object
#13 opened Nov 16, 2023 by anemartinezlarrinaga2898
4
ERROR: dependency 'presto' is not available for package 'CellChat'
#14 opened Nov 20, 2023 by fangjialing123
2
CellChat2 computeCommunProb error
#16 opened Nov 21, 2023 by kcavagnero
8
P.value threshold 1 in identifyOverExpressedGenes
#17 opened Nov 21, 2023 by trnguyenuka
1
Question in analysis of Xenium or CosMx with CellChat
#18 opened Nov 22, 2023 by SGIlabes
15
Non-protein Signaling DB is empty
#19 opened Nov 23, 2023 by fatcat-del
2
how to use netVisual_heatmap() to compare heatmaps on the same scale
#20 opened Nov 24, 2023 by hermioneallen
10
error for netAnalysis_contribution
#5 opened Nov 8, 2023 by QiangShiPKU
14
Tutorial update - multiple datasets with different cell type compositions
#22 opened Nov 28, 2023 by mcrewcow
1
Should we filter the LR-pairs before visualization after differential expression analysis?
#23 opened Nov 28, 2023 by zhangyz1997
1
Using "pairLR.use" in netVisual_chord_gene()
#321 opened Mar 7, 2025 by ikarus97
Split by timepoint
#25 opened Nov 30, 2023 by france-hub
1
Warning message is lying
#26 opened Dec 1, 2023 by mvfki
1
The parameter "scale.distance" for "computeCommunProb".
#27 opened Dec 2, 2023 by zzz1314520
2
could not open the tutorial website
#29 opened Dec 6, 2023 by cynthier
1
Is there a code to adjust the dot size when usingnetVisual_bubble function?
#31 opened Dec 9, 2023 by MinDeng-LA
6
Can we use a code to show the top 5 or 10 LR pair instead all pairs when using netAnalysis_contribution or netVisual_bubble function?
#32 opened Dec 10, 2023 by MinDeng-LA
1
Error netVisual_heatmap() on a merged object from Seurat
#33 opened Dec 12, 2023 by molybdenumt
5
Multiple conditions comparison
#21 opened Nov 28, 2023 by mcrewcow
1
ProTip! no:milestone will show everything without a milestone.