github-ci.yml

name: Github-CI

on:
  # Dispatch this workflow whenever master or dev get a PR or commit
  push:
    branches : ["dev","master"]
  pull_request:
    branches: ["dev","master"]
  # ... or when the workflow is started manually
  workflow_dispatch:

jobs:
  build_libraries:
    # Build libraries for the current version of the docker image
    # (to be used in any subsequent compilation and run jobs on said image)
    runs-on: ubuntu-latest
    container: ursg/vlasiator_ci:20230220_1
    
    steps:
      - name: Setup libraries dir
        run: |
          mkdir -p libraries/include
          mkdir -p libraries/lib
          mkdir library-build
          cd library-build
      - name: Download DCCRG
        run: |
          git clone https://github.com/fmihpc/dccrg.git 
          cd dccrg
          git checkout vlasiator-version
          cp *.hpp $GITHUB_WORKSPACE/libraries/include
          cd ..
      - name: Download fsgrid
        run: |
          git clone https://github.com/fmihpc/fsgrid.git 
          cp fsgrid/fsgrid.hpp $GITHUB_WORKSPACE/libraries/include
      - name: Build phiprof
        run: |
          git clone https://github.com/fmihpc/phiprof/ 
          cd phiprof/src
          make -j 4 CCC=mpic++
          cp ../include/* $GITHUB_WORKSPACE/libraries/include
          cp ../lib/* $GITHUB_WORKSPACE/libraries/lib
          cd ../..
      - name: Build VLSV
        run: |
          git clone https://github.com/fmihpc/vlsv.git  
          cd vlsv
          make
          cp libvlsv.a $GITHUB_WORKSPACE/libraries/lib
          cp *.h $GITHUB_WORKSPACE/libraries/include
          cd ..
      - name: Download vectorclass
        run: | 
          git clone https://github.com/vectorclass/version1
          git clone https://github.com/vectorclass/add-on
          cp add-on/vector3d/vector3d.h version1/
          cp version1/*.h $GITHUB_WORKSPACE/libraries/include
      - name: Build papi
        run: |
          git clone https://bitbucket.org/icl/papi.git
          cd papi/src
          ./configure --prefix=$GITHUB_WORKSPACE/libraries && make -j 4 CC=gcc && make install
          cd ../..
      - name: Build jemalloc
        run: |
          wget https://github.com/jemalloc/jemalloc/releases/download/4.0.4/jemalloc-4.0.4.tar.bz2
          tar xf jemalloc-4.0.4.tar.bz2
          cd jemalloc-4.0.4
          ./configure --prefix=$GITHUB_WORKSPACE/libraries --with-jemalloc-prefix=je_ && make -j 4 && make install
          cd ..
      - name: Build Zoltan
        run: |
          git clone https://github.com/sandialabs/Zoltan.git
          mkdir zoltan-build
          cd zoltan-build
          ../Zoltan/configure --prefix=$GITHUB_WORKSPACE/libraries --enable-mpi --with-mpi-compilers --with-gnumake --with-id-type=ullong && make -j 4 && make install
          cd ..
      - name: Build libraries tar
        run: tar --zstd -cvf libraries.tar.zstd libraries/
      - name: Upload libraries as artifact
        uses: actions/upload-artifact@v3
        with:
          name: libraries
          path: libraries.tar.zstd
          retention-days: 5

  build_production:
    # Build Vlasiator witth production flags
    runs-on: ubuntu-latest
    container: ursg/vlasiator_ci:20230220_1
    needs: build_libraries

    steps:
    - name: Checkout source
      uses: actions/checkout@v3 
    - name: Download libraries
      uses: actions/download-artifact@v3
      with:
        name: libraries
    - name: Unpack libraries
      run: tar --zstd -xvf libraries.tar.zstd
    - uses: ursg/gcc-problem-matcher@master
    - name: Compile vlasiator (Release build)
      run: |
        VLASIATOR_ARCH=github_actions make clean
        VLASIATOR_ARCH=github_actions make -j 3
      
  
  build_testpackage:
    # Build Vlasiator with testpackage flags, on the carrington cluster
    # (for subsequent running of the integration test package)
    runs-on: carrington

    steps:
    - name: Checkout source
      uses: actions/checkout@v3 
    - name: Make clean
      run: make clean
    - uses: ursg/gcc-problem-matcher@master
    - name: Compile vlasiator (Testpackage build)
      run: |
        export VLASIATOR_ARCH=carrington_gcc_openmpi
        srun -M carrington --job-name tp_compile --interactive --nodes=1 -n 1 -c 16 --mem=40G -p short -t 0:10:0 bash -c 'module purge; module load GCC/11.2.0; module load OpenMPI/4.1.1-GCC-11.2.0 ; module load PMIx/4.1.0-GCCcore-11.2.0; module load PAPI/6.0.0.1-GCCcore-11.2.0; export VLASIATOR_ARCH=carrington_gcc_openmpi; make -j 16 testpackage'
    - name: Upload testpackage binary
      uses: actions/upload-artifact@v3
      with:
        name: vlasiator-testpackage
        path: vlasiator
    #- name: Upload build log
    #  uses: actions/upload-artifact@v3
    #  with:
    #    name: Testpackage build log
    #    path: build.log

  build_tools:
    # Build vlsvdiff and vlsvextract for testepackage use
    runs-on: carrington
      
    steps:
    - name: Checkout source
      uses: actions/checkout@v3 
    - uses: ursg/gcc-problem-matcher@master
    - name: Make clean
      run: make clean
    - name: Compile tools
      run: |
        export VLASIATOR_ARCH=carrington_gcc_openmpi
        srun -M carrington --job-name tp_compile --interactive --nodes=1 -n 1 -c 16 --mem=40G -p short -t 0:10:0 bash -c 'module purge; module load GCC/11.2.0; module load OpenMPI/4.1.1-GCC-11.2.0 ; module load PMIx/4.1.0-GCCcore-11.2.0; module load PAPI/6.0.0.1-GCCcore-11.2.0; export VLASIATOR_ARCH=carrington_gcc_openmpi; make -j 16 vlsvextract vlsvdiff'
    - name: Upload tools binaries
      uses: actions/upload-artifact@v3
      with:
        name: vlasiator-tools
        path: |
          vlsvextract_DP
          vlsvdiff_DP

  run_testpackage:
    # Run the testpackage on the carrington cluster
    runs-on: carrington
    needs: [build_testpackage, build_tools]
    continue-on-error: true

    steps:
    - name: Checkout source
      uses: actions/checkout@v3 
    - name: Download testpackage binary
      uses: actions/download-artifact@v3
      with:
        name: vlasiator-testpackage
    - name: Download tools
      uses: actions/download-artifact@v3
      with:
        name: vlasiator-tools
    - name: Run testpackage
      id: run
      run: |
        chmod +x $GITHUB_WORKSPACE/vlasiator
        chmod +x $GITHUB_WORKSPACE/vlsv*_DP
        cd testpackage
        export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$GITHUB_WORKSPACE/libraries/lib
        #srun -M carrington -t 01:30:00 --job-name CI_testpackage --interactive --nodes=1 -c 4 -n 16 --mem-per-cpu=5G -p short ./small_test_carrington_github_ci.sh
        sbatch -W -o testpackage_run_output.txt ./small_test_carrington_github_ci.sh
        cat testpackage_run_output.txt
        cat $GITHUB_STEP_SUMMARY > $GITHUB_WORKSPACE/testpackage_check_description.txt
        cd $GITHUB_WORKSPACE
        tar -czvf testpackage-output.tar.gz testpackage_check_description.txt testpackage_output_variables.txt
        if [ -f $GITHUB_WORKSPACE/testpackage_failed ]; then
          # Fail this step if any test failed.
          exit 1
        fi
    - name: Upload testpackage output
      uses: actions/upload-artifact@v3
      if: always()
      with:
        name: testpackage-output
        path: testpackage-output.tar.gz
      # Note: Testpackage output is further processed in the pr_report.yml workflow
      # (to produce Checks against pull requests)

  build_ionosphereTests:
    # Build IonosphereSolverTests miniApp (currently broken)
    runs-on: ubuntu-latest
    container: ursg/vlasiator_ci:20230220_1
    needs: build_libraries
    steps:
    - name: Checkout source
      uses: actions/checkout@v3 
    - name: Download libraries
      uses: actions/download-artifact@v3
      with:
        name: libraries
    - name: Unpack libraries
      run: tar --zstd -xvf libraries.tar.zstd
    - uses: ursg/gcc-problem-matcher@master
    - name: Compile ionosphereSolverTests
      run: |
        cd mini-apps/ionosphereSolverTests/
        VLASIATOR_ARCH=github_actions make -j 3 main differentialFlux sigmaProfiles
    - name: Upload ionosphereTest binaries
      uses: actions/upload-artifact@v3
      with:
        name: vlasiator-tools
        path: |
          mini-apps/ionosphereSolverTests/main
          mini-apps/ionosphereSolverTests/differentialFlux
          mini-apps/ionosphereSolverTests/sigmaProfiles