From 177f67af97bd16c48796052f0accc9fc4c5e9b12 Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Tue, 4 Feb 2025 01:02:58 +0000
Subject: [PATCH] site deploy

Auto-generated via `{sandpaper}`
Source  : f57f4f3273cb8c2ea71809103bd7d594b2a96cae
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2025-02-03 13:44:52 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : d227546abc005c5d53106f1b374afe75b9179ca1
Branch  : main
Author  : Andree Valle Campos <avallecam@gmail.com>
Time    : 2025-02-03 13:43:28 +0000
Message : add epiparameter as in new episode
---
 404.html                                |  4 ++--
 BF_measles.html                         |  2 +-
 CODE_OF_CONDUCT.html                    |  2 +-
 LICENSE.html                            |  2 +-
 aio.html                                | 10 +++++-----
 compare-interventions.html              |  8 ++++----
 contact-matrices.html                   |  2 +-
 disease-burden.html                     |  2 +-
 images.html                             |  4 ++--
 index.html                              |  6 +++---
 instructor-notes.html                   |  4 ++--
 instructor/404.html                     |  4 ++--
 instructor/BF_measles.html              |  2 +-
 instructor/CODE_OF_CONDUCT.html         |  2 +-
 instructor/LICENSE.html                 |  2 +-
 instructor/aio.html                     | 12 ++++++------
 instructor/compare-interventions.html   | 10 +++++-----
 instructor/contact-matrices.html        |  2 +-
 instructor/disease-burden.html          |  2 +-
 instructor/images.html                  |  4 ++--
 instructor/index.html                   |  6 +++---
 instructor/instructor-notes.html        |  4 ++--
 instructor/key-points.html              |  4 ++--
 instructor/model-choices.html           |  2 +-
 instructor/modelling-interventions.html |  2 +-
 instructor/profiles.html                |  4 ++--
 instructor/reference.html               |  2 +-
 instructor/simulating-transmission.html |  2 +-
 instructor/vaccine-comparisons.html     |  2 +-
 key-points.html                         |  4 ++--
 model-choices.html                      |  2 +-
 modelling-interventions.html            |  2 +-
 pkgdown.yml                             |  2 +-
 profiles.html                           |  4 ++--
 reference.html                          |  2 +-
 simulating-transmission.html            |  2 +-
 vaccine-comparisons.html                |  2 +-
 37 files changed, 67 insertions(+), 67 deletions(-)

diff --git a/404.html b/404.html
index 92d97ac..43476d7 100644
--- a/404.html
+++ b/404.html
@@ -395,8 +395,8 @@ <h1>Page not found</h1>
   "url": "https://epiverse-trace.github.io/tutorials-late/404.html",
   "identifier": "https://epiverse-trace.github.io/tutorials-late/404.html",
   "dateCreated": "2025-02-03",
-  "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "dateModified": "2025-02-04",
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/BF_measles.html b/BF_measles.html
index 44a74f4..4493e0a 100644
--- a/BF_measles.html
+++ b/BF_measles.html
@@ -1324,7 +1324,7 @@ <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i
   "identifier": "https://epiverse-trace.github.io/tutorials-late/BF_measles.html",
   "dateCreated": "2025-02-03",
   "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index a4417ea..038f884 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -415,7 +415,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://epiverse-trace.github.io/tutorials-late/CODE_OF_CONDUCT.html",
   "dateCreated": "2025-02-03",
   "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/LICENSE.html b/LICENSE.html
index 9d02c24..3c2fe80 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -461,7 +461,7 @@ <h1>Licenses</h1>
   "identifier": "https://epiverse-trace.github.io/tutorials-late/LICENSE.html",
   "dateCreated": "2025-02-03",
   "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/aio.html b/aio.html
index f89f18d..b47bbe5 100644
--- a/aio.html
+++ b/aio.html
@@ -2991,7 +2991,7 @@ <h3 class="callout-title">Running a counterfactual scenario using the Vacamole m
 <button class="accordion-button hint-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseHint1" aria-expanded="false" aria-controls="collapseHint1">
   <h4 class="accordion-header" id="headingHint1"> HINT : Running the model with default parameter values </h4>
 </button>
-<div id="collapseHint1" class="accordion-collapse collapse" data-bs-parent="#accordionHint1" aria-labelledby="headingHint1">
+<div id="collapseHint1" class="accordion-collapse collapse" aria-labelledby="headingHint1" data-bs-parent="#accordionHint1">
 <div class="accordion-body">
 <p>We can run the Vacamole model with <a href="https://epiverse-trace.github.io/epidemics/articles/model_vacamole.html#model-epidemic-using-vacamole" class="external-link">default
 parameter values</a> by just specifying the population object and number
@@ -3014,7 +3014,7 @@ <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>Run the model</li>
@@ -3425,7 +3425,7 @@ <h3 class="callout-title">Challenge : Ebola outbreak analysis</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb20">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -4895,8 +4895,8 @@ <h3 class="callout-title">Key Points</h3>
   "url": "https://epiverse-trace.github.io/tutorials-late/aio.html",
   "identifier": "https://epiverse-trace.github.io/tutorials-late/aio.html",
   "dateCreated": "2025-02-03",
-  "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "dateModified": "2025-02-04",
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/compare-interventions.html b/compare-interventions.html
index 956f677..c4a714d 100644
--- a/compare-interventions.html
+++ b/compare-interventions.html
@@ -591,7 +591,7 @@ <h3 class="callout-title">Running a counterfactual scenario using the Vacamole m
 <button class="accordion-button hint-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseHint1" aria-expanded="false" aria-controls="collapseHint1">
   <h4 class="accordion-header" id="headingHint1"> HINT : Running the model with default parameter values </h4>
 </button>
-<div id="collapseHint1" class="accordion-collapse collapse" data-bs-parent="#accordionHint1" aria-labelledby="headingHint1">
+<div id="collapseHint1" class="accordion-collapse collapse" aria-labelledby="headingHint1" data-bs-parent="#accordionHint1">
 <div class="accordion-body">
 <p>We can run the Vacamole model with <a href="https://epiverse-trace.github.io/epidemics/articles/model_vacamole.html#model-epidemic-using-vacamole" class="external-link">default
 parameter values</a> by just specifying the population object and number
@@ -614,7 +614,7 @@ <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>Run the model</li>
 </ol><div class="codewrapper sourceCode" id="cb6">
@@ -1008,7 +1008,7 @@ <h3 class="callout-title">Challenge : Ebola outbreak analysis</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb20">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1200,7 +1200,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://epiverse-trace.github.io/tutorials-late/compare-interventions.html",
   "dateCreated": "2025-02-03",
   "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/contact-matrices.html b/contact-matrices.html
index 4a1a45f..04deaf4 100644
--- a/contact-matrices.html
+++ b/contact-matrices.html
@@ -925,7 +925,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://epiverse-trace.github.io/tutorials-late/contact-matrices.html",
   "dateCreated": "2025-02-03",
   "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/disease-burden.html b/disease-burden.html
index 9cb587d..0a6cac6 100644
--- a/disease-burden.html
+++ b/disease-burden.html
@@ -780,7 +780,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://epiverse-trace.github.io/tutorials-late/disease-burden.html",
   "dateCreated": "2025-02-03",
   "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/images.html b/images.html
index a009e4f..3a413e7 100644
--- a/images.html
+++ b/images.html
@@ -499,8 +499,8 @@ <h3 id="disease-burden-figure-3">Figure 3</h3>
   "url": "https://epiverse-trace.github.io/tutorials-late/images.html",
   "identifier": "https://epiverse-trace.github.io/tutorials-late/images.html",
   "dateCreated": "2025-02-03",
-  "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "dateModified": "2025-02-04",
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/index.html b/index.html
index 557da89..dbf8e69 100644
--- a/index.html
+++ b/index.html
@@ -525,7 +525,7 @@ <h3 class="accordion-header" id="headingSpoiler1">
   do you get an error with {epidemics}?
   </h3>
 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" aria-labelledby="headingSpoiler1" data-bs-parent="#accordionSpoiler1">
+<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
 <div class="accordion-body">
 <p>If you get an error message when installing {epidemics}, try this
 alternative code:</p>
@@ -669,8 +669,8 @@ <h3 id="download-the-data">Download the data<a class="anchor" aria-label="anchor
   "url": "https://epiverse-trace.github.io/tutorials-late/index.html",
   "identifier": "https://epiverse-trace.github.io/tutorials-late/index.html",
   "dateCreated": "2025-02-03",
-  "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "dateModified": "2025-02-04",
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/instructor-notes.html b/instructor-notes.html
index 96293fa..013d12d 100644
--- a/instructor-notes.html
+++ b/instructor-notes.html
@@ -442,8 +442,8 @@ <h1>Instructor Notes</h1>
   "url": "https://epiverse-trace.github.io/tutorials-late/instructor-notes.html",
   "identifier": "https://epiverse-trace.github.io/tutorials-late/instructor-notes.html",
   "dateCreated": "2025-02-03",
-  "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "dateModified": "2025-02-04",
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/instructor/404.html b/instructor/404.html
index a9c64d3..1657d53 100644
--- a/instructor/404.html
+++ b/instructor/404.html
@@ -395,8 +395,8 @@ <h1>Page not found</h1>
   "url": "https://epiverse-trace.github.io/tutorials-late/instructor/404.html",
   "identifier": "https://epiverse-trace.github.io/tutorials-late/instructor/404.html",
   "dateCreated": "2025-02-03",
-  "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "dateModified": "2025-02-04",
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/instructor/BF_measles.html b/instructor/BF_measles.html
index be1b172..03effd2 100644
--- a/instructor/BF_measles.html
+++ b/instructor/BF_measles.html
@@ -1326,7 +1326,7 @@ <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i
   "identifier": "https://epiverse-trace.github.io/tutorials-late/instructor/BF_measles.html",
   "dateCreated": "2025-02-03",
   "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/instructor/CODE_OF_CONDUCT.html b/instructor/CODE_OF_CONDUCT.html
index 91e781e..0aa23ec 100644
--- a/instructor/CODE_OF_CONDUCT.html
+++ b/instructor/CODE_OF_CONDUCT.html
@@ -417,7 +417,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://epiverse-trace.github.io/tutorials-late/instructor/CODE_OF_CONDUCT.html",
   "dateCreated": "2025-02-03",
   "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/instructor/LICENSE.html b/instructor/LICENSE.html
index ed755d6..078f883 100644
--- a/instructor/LICENSE.html
+++ b/instructor/LICENSE.html
@@ -463,7 +463,7 @@ <h1>Licenses</h1>
   "identifier": "https://epiverse-trace.github.io/tutorials-late/instructor/LICENSE.html",
   "dateCreated": "2025-02-03",
   "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/instructor/aio.html b/instructor/aio.html
index 03e0718..b8eb432 100644
--- a/instructor/aio.html
+++ b/instructor/aio.html
@@ -2873,7 +2873,7 @@ <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i
 <button class="accordion-button instructor-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseInstructor1" aria-expanded="false" aria-controls="collapseInstructor1">
   <h3 class="accordion-header" id="headingInstructor1">  <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="edit-2"></i></div> Instructor Note </h3>
 </button>
-<div id="collapseInstructor1" class="accordion-collapse collapse" data-bs-parent="#accordionInstructor1" aria-labelledby="headingInstructor1">
+<div id="collapseInstructor1" class="accordion-collapse collapse" aria-labelledby="headingInstructor1" data-bs-parent="#accordionInstructor1">
 <div class="accordion-body">
 <p>In this tutorial we introduce the concept of the counter factual and
 how to compare scenarios (counter factual versus intervention) against
@@ -3061,7 +3061,7 @@ <h3 class="callout-title">Running a counterfactual scenario using the Vacamole m
 <button class="accordion-button hint-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseHint1" aria-expanded="false" aria-controls="collapseHint1">
   <h4 class="accordion-header" id="headingHint1"> HINT : Running the model with default parameter values </h4>
 </button>
-<div id="collapseHint1" class="accordion-collapse collapse" data-bs-parent="#accordionHint1" aria-labelledby="headingHint1">
+<div id="collapseHint1" class="accordion-collapse collapse" aria-labelledby="headingHint1" data-bs-parent="#accordionHint1">
 <div class="accordion-body">
 <p>We can run the Vacamole model with <a href="https://epiverse-trace.github.io/epidemics/articles/model_vacamole.html#model-epidemic-using-vacamole" class="external-link">default
 parameter values</a> by just specifying the population object and number
@@ -3084,7 +3084,7 @@ <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>Run the model</li>
@@ -3495,7 +3495,7 @@ <h3 class="callout-title">Challenge : Ebola outbreak analysis</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb20">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -5008,8 +5008,8 @@ <h3 class="callout-title">Key Points</h3>
   "url": "https://epiverse-trace.github.io/tutorials-late/instructor/aio.html",
   "identifier": "https://epiverse-trace.github.io/tutorials-late/instructor/aio.html",
   "dateCreated": "2025-02-03",
-  "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "dateModified": "2025-02-04",
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/instructor/compare-interventions.html b/instructor/compare-interventions.html
index db0167e..5a31451 100644
--- a/instructor/compare-interventions.html
+++ b/instructor/compare-interventions.html
@@ -431,7 +431,7 @@ <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i
 <button class="accordion-button instructor-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseInstructor1" aria-expanded="false" aria-controls="collapseInstructor1">
   <h3 class="accordion-header" id="headingInstructor1">  <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="edit-2"></i></div> Instructor Note </h3>
 </button>
-<div id="collapseInstructor1" class="accordion-collapse collapse" data-bs-parent="#accordionInstructor1" aria-labelledby="headingInstructor1">
+<div id="collapseInstructor1" class="accordion-collapse collapse" aria-labelledby="headingInstructor1" data-bs-parent="#accordionInstructor1">
 <div class="accordion-body">
 <p>In this tutorial we introduce the concept of the counter factual and
 how to compare scenarios (counter factual versus intervention) against
@@ -606,7 +606,7 @@ <h3 class="callout-title">Running a counterfactual scenario using the Vacamole m
 <button class="accordion-button hint-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseHint1" aria-expanded="false" aria-controls="collapseHint1">
   <h4 class="accordion-header" id="headingHint1"> HINT : Running the model with default parameter values </h4>
 </button>
-<div id="collapseHint1" class="accordion-collapse collapse" data-bs-parent="#accordionHint1" aria-labelledby="headingHint1">
+<div id="collapseHint1" class="accordion-collapse collapse" aria-labelledby="headingHint1" data-bs-parent="#accordionHint1">
 <div class="accordion-body">
 <p>We can run the Vacamole model with <a href="https://epiverse-trace.github.io/epidemics/articles/model_vacamole.html#model-epidemic-using-vacamole" class="external-link">default
 parameter values</a> by just specifying the population object and number
@@ -629,7 +629,7 @@ <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>Run the model</li>
 </ol><div class="codewrapper sourceCode" id="cb6">
@@ -1023,7 +1023,7 @@ <h3 class="callout-title">Challenge : Ebola outbreak analysis</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb20">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1215,7 +1215,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://epiverse-trace.github.io/tutorials-late/instructor/compare-interventions.html",
   "dateCreated": "2025-02-03",
   "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/instructor/contact-matrices.html b/instructor/contact-matrices.html
index 28094c8..e756d92 100644
--- a/instructor/contact-matrices.html
+++ b/instructor/contact-matrices.html
@@ -938,7 +938,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://epiverse-trace.github.io/tutorials-late/instructor/contact-matrices.html",
   "dateCreated": "2025-02-03",
   "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/instructor/disease-burden.html b/instructor/disease-burden.html
index aae1660..f120db6 100644
--- a/instructor/disease-burden.html
+++ b/instructor/disease-burden.html
@@ -795,7 +795,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://epiverse-trace.github.io/tutorials-late/instructor/disease-burden.html",
   "dateCreated": "2025-02-03",
   "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/instructor/images.html b/instructor/images.html
index 4a0ecd1..9cca5f3 100644
--- a/instructor/images.html
+++ b/instructor/images.html
@@ -501,8 +501,8 @@ <h3 id="disease-burden-figure-3">Figure 3</h3>
   "url": "https://epiverse-trace.github.io/tutorials-late/instructor/images.html",
   "identifier": "https://epiverse-trace.github.io/tutorials-late/instructor/images.html",
   "dateCreated": "2025-02-03",
-  "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "dateModified": "2025-02-04",
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/instructor/index.html b/instructor/index.html
index 4d18317..8b75351 100644
--- a/instructor/index.html
+++ b/instructor/index.html
@@ -603,7 +603,7 @@ <h3 class="accordion-header" id="headingSpoiler1">
   do you get an error with {epidemics}?
   </h3>
 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" aria-labelledby="headingSpoiler1" data-bs-parent="#accordionSpoiler1">
+<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
 <div class="accordion-body">
 <p>If you get an error message when installing {epidemics}, try this
 alternative code:</p>
@@ -747,8 +747,8 @@ <h3 id="download-the-data">Download the data<a class="anchor" aria-label="anchor
   "url": "https://epiverse-trace.github.io/tutorials-late/instructor/index.html",
   "identifier": "https://epiverse-trace.github.io/tutorials-late/instructor/index.html",
   "dateCreated": "2025-02-03",
-  "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "dateModified": "2025-02-04",
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/instructor/instructor-notes.html b/instructor/instructor-notes.html
index 39bbe8f..b8dc30d 100644
--- a/instructor/instructor-notes.html
+++ b/instructor/instructor-notes.html
@@ -518,8 +518,8 @@ <h3 id="disease-burden-headingInstructor1">
   "url": "https://epiverse-trace.github.io/tutorials-late/instructor/instructor-notes.html",
   "identifier": "https://epiverse-trace.github.io/tutorials-late/instructor/instructor-notes.html",
   "dateCreated": "2025-02-03",
-  "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "dateModified": "2025-02-04",
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/instructor/key-points.html b/instructor/key-points.html
index 3be59c5..e6240a3 100644
--- a/instructor/key-points.html
+++ b/instructor/key-points.html
@@ -488,8 +488,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://epiverse-trace.github.io/tutorials-late/instructor/key-points.html",
   "identifier": "https://epiverse-trace.github.io/tutorials-late/instructor/key-points.html",
   "dateCreated": "2025-02-03",
-  "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "dateModified": "2025-02-04",
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/instructor/model-choices.html b/instructor/model-choices.html
index 38172f5..b2586c9 100644
--- a/instructor/model-choices.html
+++ b/instructor/model-choices.html
@@ -922,7 +922,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://epiverse-trace.github.io/tutorials-late/instructor/model-choices.html",
   "dateCreated": "2025-02-03",
   "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/instructor/modelling-interventions.html b/instructor/modelling-interventions.html
index ccc9651..25f6d8b 100644
--- a/instructor/modelling-interventions.html
+++ b/instructor/modelling-interventions.html
@@ -998,7 +998,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://epiverse-trace.github.io/tutorials-late/instructor/modelling-interventions.html",
   "dateCreated": "2025-02-03",
   "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/instructor/profiles.html b/instructor/profiles.html
index ce21782..fc193b1 100644
--- a/instructor/profiles.html
+++ b/instructor/profiles.html
@@ -374,8 +374,8 @@ <h1>Learner Profiles</h1>
   "url": "https://epiverse-trace.github.io/tutorials-late/instructor/profiles.html",
   "identifier": "https://epiverse-trace.github.io/tutorials-late/instructor/profiles.html",
   "dateCreated": "2025-02-03",
-  "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "dateModified": "2025-02-04",
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/instructor/reference.html b/instructor/reference.html
index 110aeb6..60b5d00 100644
--- a/instructor/reference.html
+++ b/instructor/reference.html
@@ -663,7 +663,7 @@ <h1>Glossary of Terms: Epiverse-TRACE</h1>
   "identifier": "https://epiverse-trace.github.io/tutorials-late/instructor/reference.html",
   "dateCreated": "2025-02-03",
   "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/instructor/simulating-transmission.html b/instructor/simulating-transmission.html
index b69bb98..6ff9cf3 100644
--- a/instructor/simulating-transmission.html
+++ b/instructor/simulating-transmission.html
@@ -1046,7 +1046,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://epiverse-trace.github.io/tutorials-late/instructor/simulating-transmission.html",
   "dateCreated": "2025-02-03",
   "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/instructor/vaccine-comparisons.html b/instructor/vaccine-comparisons.html
index 25624a2..31b9c07 100644
--- a/instructor/vaccine-comparisons.html
+++ b/instructor/vaccine-comparisons.html
@@ -1289,7 +1289,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://epiverse-trace.github.io/tutorials-late/instructor/vaccine-comparisons.html",
   "dateCreated": "2025-02-03",
   "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/key-points.html b/key-points.html
index 59df98b..9dbe9af 100644
--- a/key-points.html
+++ b/key-points.html
@@ -486,8 +486,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://epiverse-trace.github.io/tutorials-late/key-points.html",
   "identifier": "https://epiverse-trace.github.io/tutorials-late/key-points.html",
   "dateCreated": "2025-02-03",
-  "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "dateModified": "2025-02-04",
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/model-choices.html b/model-choices.html
index 1de4a69..5502fa6 100644
--- a/model-choices.html
+++ b/model-choices.html
@@ -908,7 +908,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://epiverse-trace.github.io/tutorials-late/model-choices.html",
   "dateCreated": "2025-02-03",
   "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/modelling-interventions.html b/modelling-interventions.html
index 44e875d..ad36f3f 100644
--- a/modelling-interventions.html
+++ b/modelling-interventions.html
@@ -982,7 +982,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://epiverse-trace.github.io/tutorials-late/modelling-interventions.html",
   "dateCreated": "2025-02-03",
   "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/pkgdown.yml b/pkgdown.yml
index d0880c2..5cb5ecb 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -2,4 +2,4 @@ pandoc: 3.1.11
 pkgdown: 2.1.1
 pkgdown_sha: ~
 articles: {}
-last_built: 2025-02-03T14:45Z
+last_built: 2025-02-04T01:02Z
diff --git a/profiles.html b/profiles.html
index e754004..1e338f4 100644
--- a/profiles.html
+++ b/profiles.html
@@ -374,8 +374,8 @@ <h1>Learner Profiles</h1>
   "url": "https://epiverse-trace.github.io/tutorials-late/profiles.html",
   "identifier": "https://epiverse-trace.github.io/tutorials-late/profiles.html",
   "dateCreated": "2025-02-03",
-  "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "dateModified": "2025-02-04",
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/reference.html b/reference.html
index b00937d..e19f5d2 100644
--- a/reference.html
+++ b/reference.html
@@ -661,7 +661,7 @@ <h1>Glossary of Terms: Epiverse-TRACE</h1>
   "identifier": "https://epiverse-trace.github.io/tutorials-late/reference.html",
   "dateCreated": "2025-02-03",
   "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/simulating-transmission.html b/simulating-transmission.html
index 6828723..1f51f07 100644
--- a/simulating-transmission.html
+++ b/simulating-transmission.html
@@ -1031,7 +1031,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://epiverse-trace.github.io/tutorials-late/simulating-transmission.html",
   "dateCreated": "2025-02-03",
   "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "datePublished": "2025-02-04"
 }
 
   </script><script>
diff --git a/vaccine-comparisons.html b/vaccine-comparisons.html
index 3268b8d..4a183b5 100644
--- a/vaccine-comparisons.html
+++ b/vaccine-comparisons.html
@@ -1263,7 +1263,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://epiverse-trace.github.io/tutorials-late/vaccine-comparisons.html",
   "dateCreated": "2025-02-03",
   "dateModified": "2025-02-03",
-  "datePublished": "2025-02-03"
+  "datePublished": "2025-02-04"
 }
 
   </script><script>