From c702650dc5c5e750016451e046143ba09d590032 Mon Sep 17 00:00:00 2001
From: emosca-cnr <ettore.mosca@itb.cnr.it>
Date: Mon, 2 Aug 2021 15:32:33 +0200
Subject: [PATCH] readme

---
 DESCRIPTION       |  2 +-
 README.md         |  2 +-
 mND.Rproj         | 17 +++++++++++++++++
 vignettes/mND.Rmd |  5 +++--
 4 files changed, 22 insertions(+), 4 deletions(-)
 create mode 100644 mND.Rproj

diff --git a/DESCRIPTION b/DESCRIPTION
index 69b1be5..25bc135 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -9,7 +9,7 @@ Description: Network diffusion based method for integrative multi-omics analysis
 License: GPL (>=2)
 LazyData: true
 Depends: R (>= 3.3.3), parallel, igraph
-RoxygenNote: 7.1.0
+RoxygenNote: 7.1.1
 Suggests: knitr, rmarkdown,
 VignetteBuilder: knitr
 NeedsCompilation: no
diff --git a/README.md b/README.md
index 21d45aa..0e1d2e5 100644
--- a/README.md
+++ b/README.md
@@ -16,7 +16,7 @@ Di Nanni N, Gnocchi M, Moscatelli M, Milanesi L and Mosca E, *Gene relevance bas
 ```{r, eval=FALSE}
 install.packages(c("devtools", "igraph", "parallel"))
 library(devtools)
-install_github("emosca-cnr/mND")
+install_github("emosca-cnr/mND", build_vignettes = TRUE)
 ```
 
 ## Documentation
diff --git a/mND.Rproj b/mND.Rproj
new file mode 100644
index 0000000..6700850
--- /dev/null
+++ b/mND.Rproj
@@ -0,0 +1,17 @@
+Version: 1.0
+
+RestoreWorkspace: Default
+SaveWorkspace: Default
+AlwaysSaveHistory: Default
+
+EnableCodeIndexing: Yes
+UseSpacesForTab: No
+NumSpacesForTab: 2
+Encoding: UTF-8
+
+RnwWeave: Sweave
+LaTeX: pdfLaTeX
+
+BuildType: Package
+PackageUseDevtools: Yes
+PackageInstallArgs: --no-multiarch --with-keep.source
diff --git a/vignettes/mND.Rmd b/vignettes/mND.Rmd
index d413b4c..6543b11 100644
--- a/vignettes/mND.Rmd
+++ b/vignettes/mND.Rmd
@@ -21,8 +21,9 @@ This document describes the R package mND [@mND], a new network diffusion based
 
 The package can be installed from within R:
 ```{r, eval=FALSE}
-install.packages("igraph") 
-install.packages("/path_to_package/mND_xxx.tar.gz", repos = NULL)
+install.packages(c("devtools", "igraph", "parallel"))
+library(devtools)
+install_github("emosca-cnr/mND", build_vignettes = TRUE)
 library(mND)
 ```