QIsModule.xml

<?xml version="1.0" encoding="utf-8"?>
<executable>
  <category>Quantification</category>
  <title>Quantitative Indices</title>
  <description><![CDATA[Calculate quantitative indices for a specified label. Requires PET and label images as input.]]></description>
  <version>0.1.0</version>
  <documentation-url>http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/quantitativeIndices</documentation-url>
  <license/>
  <contributor>Ethan Ulrich</contributor>
  <acknowledgements/>
  <parameters>
    <label>Input Images</label>
    <description><![CDATA[Input images]]></description>
    <image type="scalar">
      <name>PET_Image</name>
      <label>PET Image</label>
      <channel>input</channel>
      <index>0</index>
      <description><![CDATA[PET Image File]]></description>
    </image>
    <image type="label">
      <name>Label_Image</name>
      <label>Label Image</label>
      <channel>input</channel>
      <index>1</index>
      <description><![CDATA[Label Map Image File]]></description>
    </image>
    <integer>
      <name>Label_Value</name>
      <label>Label Value</label>
      <description>Label Map value for region to be quantified</description>
      <index>2</index>
      <default>1</default>
      <constraints>
        <minimum>0</minimum>
        <maximum>100</maximum>
        <step>1</step>
      </constraints>
    </integer>
  </parameters>
  <parameters>
    <label>Quantitative Indices Selection</label>
    <description><![CDATA[Indices to be calculated]]></description>
    <boolean>
      <name>Mean</name>
      <label>Mean</label>
      <longflag>--mean</longflag>
      <description><![CDATA[Mean value in region of interest]]></description>
      <default>false</default>
    </boolean>
    <boolean>
      <name>Variance</name>
      <label>Variance</label>
      <longflag>--variance</longflag>
      <description><![CDATA[Variance in region of interest]]></description>
      <default>false</default>
    </boolean>
    <boolean>
      <name>Min</name>
      <label>Min</label>
      <longflag>--min</longflag>
      <description><![CDATA[Minimum value in region of interest]]></description>
      <default>false</default>
    </boolean>
    <boolean>
      <name>Max</name>
      <label>Max</label>
      <longflag>--max</longflag>
      <description><![CDATA[Maximum value in region of interest]]></description>
      <default>false</default>
    </boolean>
    <boolean>
      <name>RMS</name>
      <label>RMS</label>
      <longflag>--rms</longflag>
      <description><![CDATA[Root-mean-square value in region of interest]]></description>
      <default>false</default>
    </boolean>
    <boolean>
      <name>Volume</name>
      <label>Volume</label>
      <longflag>--volume</longflag>
      <description><![CDATA[Volume of region of interest]]></description>
      <default>false</default>
    </boolean>
    <boolean>
      <name>Quart1</name>
      <label>1st Quartile</label>
      <longflag>--quart1</longflag>
      <description><![CDATA[First quartile in region of interest]]></description>
      <default>false</default>
    </boolean>
    <boolean>
      <name>Median</name>
      <label>Median</label>
      <longflag>--median</longflag>
      <description><![CDATA[Median value in region of interest]]></description>
      <default>false</default>
    </boolean>
    <boolean>
      <name>Quart3</name>
      <label>3rd Quartile</label>
      <longflag>--quart3</longflag>
      <description><![CDATA[Third quartile in region of interest]]></description>
      <default>false</default>
    </boolean>
    <boolean>
      <name>Adj</name>
      <label>Upper Adjacent</label>
      <longflag>--adj</longflag>
      <description><![CDATA[Upper adjacent value in region of interest]]></description>
      <default>false</default>
    </boolean>
    <boolean>
      <name>MTV</name>
      <label>MTV</label>
      <longflag>--mtv</longflag>
      <description><![CDATA[Metabolic tumor volume]]></description>
      <default>false</default>
    </boolean>
    <boolean>
      <name>Gly1</name>
      <label>Glycolysis Q1</label>
      <longflag>--gly1</longflag>
      <description><![CDATA[Metabolic tumor volume in 1st quarter of distribution]]></description>
      <default>false</default>
    </boolean>
    <boolean>
      <name>Gly2</name>
      <label>Glycolysis Q2</label>
      <longflag>--gly2</longflag>
      <description><![CDATA[Metabolic tumor volume in 2nd quarter of distribution]]></description>
      <default>false</default>
    </boolean>
    <boolean>
      <name>Gly3</name>
      <label>Glycolysis Q3</label>
      <longflag>--gly3</longflag>
      <description><![CDATA[Metabolic tumor volume in 3rd quarter of distribution]]></description>
      <default>false</default>
    </boolean>
    <boolean>
      <name>Gly4</name>
      <label>Glycolysis Q4</label>
      <longflag>--gly4</longflag>
      <description><![CDATA[Metabolic tumor volume in 4th quarter of distribution]]></description>
      <default>false</default>
    </boolean>
    <boolean>
      <name>Q1</name>
      <label>Q1 Distribution</label>
      <longflag>--q1</longflag>
      <description><![CDATA[1st quarter distribution of range in region of interest]]></description>
      <default>false</default>
    </boolean>
    <boolean>
      <name>Q2</name>
      <label>Q2 Distribution</label>
      <longflag>--q2</longflag>
      <description><![CDATA[2nd quarter distribution of range in region of interest]]></description>
      <default>false</default>
    </boolean>
    <boolean>
      <name>Q3</name>
      <label>Q3 Distribution</label>
      <longflag>--q3</longflag>
      <description><![CDATA[3rd quarter distribution of range in region of interest]]></description>
      <default>false</default>
    </boolean>
    <boolean>
      <name>Q4</name>
      <label>Q4 Distribution</label>
      <longflag>--q4</longflag>
      <description><![CDATA[4th quarter distribution of range in region of interest]]></description>
      <default>false</default>
    </boolean>
    <boolean>
      <name>SAM</name>
      <label>SAM</label>
      <longflag>--sam</longflag>
      <description><![CDATA[Standardized added metabolic activity]]></description>
      <default>false</default>
    </boolean>
    <boolean>
      <name>SAMBG</name>
      <label>SAM mean background</label>
      <longflag>--sambg</longflag>
      <description><![CDATA[Standardized added metabolic activity mean background]]></description>
      <default>false</default>
    </boolean>
    <boolean>
      <name>Peak</name>
      <label>Peak</label>
      <longflag>--peak</longflag>
      <description><![CDATA[Peak value in region of interest]]></description>
      <default>false</default>
    </boolean>
  </parameters>
  <parameters advanced='true'>
    <label>Quantitative Indices Output</label>
    <description><![CDATA[Output of quantitative indices calculation]]></description>
    <string>
      <name>Mean_s</name>
      <label>Mean</label>
      <channel>output</channel>
      <description><![CDATA[Mean value in region of interest]]></description>
    </string>
    <string>
      <name>Variance_s</name>
      <label>Variance</label>
      <channel>output</channel>
      <description><![CDATA[Variance in region of interest]]></description>
    </string>
    <string>
      <name>Min_s</name>
      <label>Min</label>
      <channel>output</channel>
      <description><![CDATA[Minimum value in region of interest]]></description>
    </string>
    <string>
      <name>Max_s</name>
      <label>Max</label>
      <channel>output</channel>
      <description><![CDATA[Maximum value in region of interest]]></description>
    </string>
    <string>
      <name>RMS_s</name>
      <label>RMS</label>
      <channel>output</channel>
      <description><![CDATA[Root-mean-square value in region of interest]]></description>
    </string>
    <string>
      <name>Volume_s</name>
      <label>Volume</label>
      <channel>output</channel>
      <description><![CDATA[Volume of region of interest]]></description>
    </string>
    <string>
      <name>Quart1_s</name>
      <label>1st Quartile</label>
      <channel>output</channel>
      <description><![CDATA[First quartile in region of interest]]></description>
    </string>
    <string>
      <name>Median_s</name>
      <label>Median</label>
      <channel>output</channel>
      <description><![CDATA[Median value in region of interest]]></description>
    </string>
    <string>
      <name>Quart3_s</name>
      <label>3rd Quartile</label>
      <channel>output</channel>
      <description><![CDATA[Third quartile in region of interest]]></description>
    </string>
    <string>
      <name>Adj_s</name>
      <label>Upper Adjacent</label>
      <channel>output</channel>
      <description><![CDATA[Upper adjacent value in region of interest]]></description>
    </string>
    <string>
      <name>MTV_s</name>
      <label>MTV</label>
      <channel>output</channel>
      <description><![CDATA[Metabolic tumor volume]]></description>
    </string>
    <string>
      <name>Gly1_s</name>
      <label>Glycolysis Q1</label>
      <channel>output</channel>
      <description><![CDATA[Metabolic tumor volume in 1st quarter of distribution]]></description>
    </string>
    <string>
      <name>Gly2_s</name>
      <label>Glycolysis Q2</label>
      <channel>output</channel>
      <description><![CDATA[Metabolic tumor volume in 2nd quarter of distribution]]></description>
    </string>
    <string>
      <name>Gly3_s</name>
      <label>Glycolysis Q3</label>
      <channel>output</channel>
      <description><![CDATA[Metabolic tumor volume in 3rd quarter of distribution]]></description>
    </string>
    <string>
      <name>Gly4_s</name>
      <label>Glycolysis Q4</label>
      <channel>output</channel>
      <description><![CDATA[Metabolic tumor volume in 4th quarter of distribution]]></description>
    </string>
    <string>
      <name>Q1_s</name>
      <label>Q1 Distribution</label>
      <channel>output</channel>
      <description><![CDATA[1st quarter distribution of range in region of interest]]></description>
    </string>
    <string>
      <name>Q2_s</name>
      <label>Q2 Distribution</label>
      <channel>output</channel>
      <description><![CDATA[2nd quarter distribution of range in region of interest]]></description>
    </string>
    <string>
      <name>Q3_s</name>
      <label>Q3 Distribution</label>
      <channel>output</channel>
      <description><![CDATA[3rd quarter distribution of range in region of interest]]></description>
    </string>
    <string>
      <name>Q4_s</name>
      <label>Q4 Distribution</label>
      <channel>output</channel>
      <description><![CDATA[4th quarter distribution of range in region of interest]]></description>
    </string>
    <string>
      <name>SAM_s</name>
      <label>SAM</label>
      <channel>output</channel>
      <description><![CDATA[Standardized added metabolic activity]]></description>
    </string>
    <string>
      <name>SAMBG_s</name>
      <label>SAM mean background</label>
      <channel>output</channel>
      <description><![CDATA[Standardized added metabolic activity mean background]]></description>
    </string>
    <string>
      <name>Peak_s</name>
      <label>Peak</label>
      <channel>output</channel>
      <description><![CDATA[Peak value in region of interest]]></description>
    </string>
  </parameters>
</executable>