From b8c5ae877d474fdda94f1ac5109b3d115cf72e80 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Rafa=C5=82=20Tr=C3=B3jczak?= <Rafal.Trojczak@makolab.com>
Date: Tue, 29 Nov 2022 10:37:44 +0100
Subject: [PATCH] Fix SLF4J warning
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Signed-off-by: Rafał Trójczak <Rafal.Trojczak@makolab.com>
---
 pom.xml                                       | 29 +++++++++++++------
 .../writer/SortedTurtleWriter.java            | 11 ++++++-
 2 files changed, 30 insertions(+), 10 deletions(-)

diff --git a/pom.xml b/pom.xml
index 9d02313..4213539 100644
--- a/pom.xml
+++ b/pom.xml
@@ -6,7 +6,7 @@
 
   <groupId>org.edmcouncil</groupId>
   <artifactId>rdf-toolkit</artifactId>
-  <version>1.14.0</version>
+  <version>1.14.1</version>
 
   <properties>
     <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
@@ -14,6 +14,7 @@
     <maven.compiler.target>11</maven.compiler.target>
 
     <!-- Versions -->
+    <slf4j.version>2.0.4</slf4j.version>
     <logback.version>1.4.4</logback.version>
     <junit.jupiter.version>5.9.0</junit.jupiter.version>
   </properties>
@@ -39,6 +40,22 @@
   </dependencyManagement>
 
   <dependencies>
+    <dependency>
+      <groupId>org.slf4j</groupId>
+      <artifactId>slf4j-api</artifactId>
+      <version>${slf4j.version}</version>
+    </dependency>
+    <dependency>
+      <groupId>ch.qos.logback</groupId>
+      <artifactId>logback-core</artifactId>
+      <version>${logback.version}</version>
+    </dependency>
+    <dependency>
+      <groupId>ch.qos.logback</groupId>
+      <artifactId>logback-classic</artifactId>
+      <version>${logback.version}</version>
+    </dependency>
+
     <dependency>
       <groupId>org.apache.commons</groupId>
       <artifactId>commons-lang3</artifactId>
@@ -47,14 +64,14 @@
     <dependency>
       <groupId>org.apache.commons</groupId>
       <artifactId>commons-text</artifactId>
-      <version>1.9</version>
+      <version>1.10.0</version>
     </dependency>
-
     <dependency>
       <groupId>commons-cli</groupId>
       <artifactId>commons-cli</artifactId>
       <version>1.5.0</version>
     </dependency>
+
     <dependency>
       <groupId>org.eclipse.rdf4j</groupId>
       <artifactId>rdf4j-storage</artifactId>
@@ -83,12 +100,6 @@
       <version>2.3.3</version>
     </dependency>
 
-    <dependency>
-      <groupId>ch.qos.logback</groupId>
-      <artifactId>logback-classic</artifactId>
-      <version>${logback.version}</version>
-    </dependency>
-
     <dependency>
       <groupId>org.junit.jupiter</groupId>
       <artifactId>junit-jupiter-api</artifactId>
diff --git a/src/main/java/org/edmcouncil/rdf_toolkit/writer/SortedTurtleWriter.java b/src/main/java/org/edmcouncil/rdf_toolkit/writer/SortedTurtleWriter.java
index 23c753d..0bb97dc 100644
--- a/src/main/java/org/edmcouncil/rdf_toolkit/writer/SortedTurtleWriter.java
+++ b/src/main/java/org/edmcouncil/rdf_toolkit/writer/SortedTurtleWriter.java
@@ -62,6 +62,11 @@ public class SortedTurtleWriter extends SortedRdfWriter {
     // Turtle allows "values" in RDF collections
     private static final Class<Value> COLLECTION_CLASS = Value.class;
 
+    /**
+     * RDF Types that are preferred to be used first.
+     */
+    private final List<IRI> preferredRdfTypes = new ArrayList<>(PREFERRED_RDF_TYPES);
+
     /** Output stream for this Turtle writer. */
     private final IndentingWriter output;
 
@@ -143,6 +148,10 @@ public void startRDF() throws RDFHandlerException {
      */
     @Override
     public void endRDF() throws RDFHandlerException {
+        if (suppressNamedIndividuals) {
+            preferredRdfTypes.remove(Constants.owlNamedIndividual);
+        }
+
         try {
             // Sort triples, etc.
             sortedOntologies = unsortedOntologies.toSorted(COLLECTION_CLASS, comparisonContext);
@@ -254,7 +263,7 @@ protected void writeSubjectTriples(Writer out, Resource subject) throws Exceptio
                 List<Value> valuesList = new ArrayList<>();
                 if (values != null && !values.isEmpty()) {
                     if (predicate == Constants.RDF_TYPE) {
-                        for (IRI preferredType : PREFERRED_RDF_TYPES) {
+                        for (IRI preferredType : preferredRdfTypes) {
                             if (values.contains(preferredType)) {
                                 valuesList.add(preferredType);
                                 values.remove(preferredType);