From 7cd1c72976e1b5ba5e18d8e91d970c6e115d1bec Mon Sep 17 00:00:00 2001
From: Joey Zhao <zhao.zhuoyi2009@gmail.com>
Date: Wed, 14 Jun 2023 18:37:31 +0800
Subject: [PATCH] update ignore file and README

---
 .gitignore                                    |   1 +
 README.md                                     |  85 +++-
 assets/OsGeo4WShell.png                       | Bin 0 -> 7810 bytes
 ...img_201211_utm_new_export_pyramid_clip.csv |  31 --
 ui/Selector_old.ui                            | 445 ------------------
 5 files changed, 85 insertions(+), 477 deletions(-)
 create mode 100644 assets/OsGeo4WShell.png
 delete mode 100644 features/beiluhe_google_img_201211_utm_new_export_pyramid_clip/beiluhe_google_img_201211_utm_new_export_pyramid_clip.csv
 delete mode 100644 ui/Selector_old.ui

diff --git a/.gitignore b/.gitignore
index 19907a7..2baed86 100644
--- a/.gitignore
+++ b/.gitignore
@@ -2,4 +2,5 @@ __pycache__/geo_sam_tool.cpython-39.pyc
 __pycache__/sam_ext.cpython-39.pyc
 __pycache__/__init__.cpython-39.pyc
 __pycache__/torchgeo_sam.cpython-39.pyc
+features/**/*.csv
 .DS_Store
diff --git a/README.md b/README.md
index 60597b4..7be07f9 100644
--- a/README.md
+++ b/README.md
@@ -1,2 +1,85 @@
 # Geo-SAM
-Using Segment Anything Model (SAM) to accelerate segmenting or delineating landforms in geospatial raster images.
+
+By Joey and Fancy from CryoLab, ESSC, CUHK.
+
+## Introduction
+
+Geo SAM is a tool aims to help people segment, delineate or label landforms with large-size geo-spatial raster images.
+Segment Anything Model (SAM) is foundation AI vision model with super power, but the model size is large and using it to process images can take a long time, and a modern GPU is usually needed.
+With the pre-generated image features using Vision Transformer image encoder, the interactive segmentation process can be run in real-time on a laptop without dedicated GPU.
+
+## Installation
+
+### Install QGIS
+
+You are recommended to install the latest version of QGIS, since the plugin has only been tested on the versions later than QGIS 3.30, at least ver. 2.28 is recommended.
+
+## Install Library Dependencies
+
+### For Windows Users
+
+![OsGeo4WShell](./assets/OsGeo4WShell.png)
+
+<!-- <p align="center">
+  <img src="./assets/OsGeo4WShell.png" width="100" title="OsGeo4WShell"> -->
+  <!-- <img src="./assets/OsGeo4WShell.png" width="100" alt="OsGeo4WShell"> -->
+<!-- </p> -->
+
+Open the `OSGeo4W Shell` application, which is dedicated shell for the QGIS. Then run the following command to install the libraries.
+
+```bash
+pip3 install torch==1.13.1 torchvision==0.14.1
+pip3 install torchgeo
+pip3 install segment-anything
+pip3 install rasterio==1.3.7
+```
+
+### For Mac or Linux Users
+
+Open your own terminal application, and change the directory to the QGIS Python environment.
+
+```bash
+# Mac
+cd /<qgispath>/Contents/Resources/python
+# Linux
+cd /<qgispath>/share/qgis/python
+```
+
+Then install the libraries.
+
+```bash
+./pip3 install torch==1.13.1 torchvision==0.14.1
+./pip3 install torchgeo
+./pip3 install segment-anything
+./pip3 install rasterio==1.3.7
+```
+
+## Install the GeoSAM Plugin
+
+Download the plugin zip file, unzip and put the contents in the plugin folder, then restart QGIS.
+
+### How to Find the QGIS Plugin folder
+
+From the `Settings` Menu, `User Profiles`, select `Open active profile folder.`  You'll be taken straight to the profile directory in Explorer or Finder. Under the profile folder you may find a `python` folder, the plugins folder should be right inside the python folder. Open the `plugins` folder, then put the entire `Geo-SAM` folder in it (avoid nested folder after unzipping), then restart QGIS.
+
+Below are some general paths of different systems for your reference.
+
+```bash
+# Windows
+%APPDATA%\QGIS\QGIS3\profiles\default\python\plugins
+# Mac
+~/Library/Application\ Support/QGIS/QGIS3/profiles/default/python/plugins
+# Linux
+~/.local/share/QGIS/QGIS3/profiles/default/python/plugins
+```
+
+### Activate Geo SAM Plugin
+
+After restarting QGIS, you may go to the `Plugins` menu, select `Manage and Install Plugins`, under `Installed`, you may find the `Geo SAM` plugin, check it to activate the plugin.
+
+## Tips for Using GeoSAM Tool
+
+- Deal with only **One Subject** each time
+- Use **Background Points** to exclude unwanted parts
+- Use **Bounding Box (BBox)** to limit the segment polygon boundary
+- The **BBox** should cover the entire subject
diff --git a/assets/OsGeo4WShell.png b/assets/OsGeo4WShell.png
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-      <rect>
-       <x>17</x>
-       <y>7</y>
-       <width>90</width>
-       <height>16</height>
-      </rect>
-     </property>
-     <property name="text">
-      <string>Add Points</string>
-     </property>
-     <property name="alignment">
-      <set>Qt::AlignCenter</set>
-     </property>
-    </widget>
-    <widget class="QPushButton" name="pushButton_fg">
-     <property name="geometry">
-      <rect>
-       <x>10</x>
-       <y>27</y>
-       <width>100</width>
-       <height>25</height>
-      </rect>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>120</width>
-       <height>16777215</height>
-      </size>
-     </property>
-     <property name="text">
-      <string>Foreground</string>
-     </property>
-    </widget>
-    <widget class="QPushButton" name="pushButton_bg">
-     <property name="geometry">
-      <rect>
-       <x>10</x>
-       <y>60</y>
-       <width>100</width>
-       <height>25</height>
-      </rect>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>16777215</width>
-       <height>16777215</height>
-      </size>
-     </property>
-     <property name="text">
-      <string>Background</string>
-     </property>
-    </widget>
-   </widget>
-   <widget class="QFrame" name="frame_2">
-    <property name="geometry">
-     <rect>
-      <x>125</x>
-      <y>0</y>
-      <width>121</width>
-      <height>90</height>
-     </rect>
-    </property>
-    <property name="frameShape">
-     <enum>QFrame::StyledPanel</enum>
-    </property>
-    <property name="frameShadow">
-     <enum>QFrame::Raised</enum>
-    </property>
-    <widget class="QPushButton" name="pushButton_rect">
-     <property name="geometry">
-      <rect>
-       <x>10</x>
-       <y>40</y>
-       <width>100</width>
-       <height>25</height>
-      </rect>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>120</width>
-       <height>16777215</height>
-      </size>
-     </property>
-     <property name="text">
-      <string>Rectangle</string>
-     </property>
-    </widget>
-    <widget class="QLabel" name="label_3">
-     <property name="geometry">
-      <rect>
-       <x>20</x>
-       <y>20</y>
-       <width>78</width>
-       <height>16</height>
-      </rect>
-     </property>
-     <property name="text">
-      <string>Add BBox</string>
-     </property>
-     <property name="alignment">
-      <set>Qt::AlignCenter</set>
-     </property>
-    </widget>
-   </widget>
-   <widget class="QFrame" name="frame_4">
-    <property name="geometry">
-     <rect>
-      <x>365</x>
-      <y>0</y>
-      <width>120</width>
-      <height>90</height>
-     </rect>
-    </property>
-    <property name="frameShape">
-     <enum>QFrame::StyledPanel</enum>
-    </property>
-    <property name="frameShadow">
-     <enum>QFrame::Raised</enum>
-    </property>
-    <widget class="QPushButton" name="pushButton_save">
-     <property name="geometry">
-      <rect>
-       <x>10</x>
-       <y>40</y>
-       <width>100</width>
-       <height>25</height>
-      </rect>
-     </property>
-     <property name="text">
-      <string>Save </string>
-     </property>
-    </widget>
-    <widget class="QLabel" name="label_7">
-     <property name="geometry">
-      <rect>
-       <x>10</x>
-       <y>20</y>
-       <width>101</width>
-       <height>16</height>
-      </rect>
-     </property>
-     <property name="text">
-      <string>Save Polygon</string>
-     </property>
-     <property name="alignment">
-      <set>Qt::AlignCenter</set>
-     </property>
-    </widget>
-   </widget>
-   <widget class="QFrame" name="frame_5">
-    <property name="geometry">
-     <rect>
-      <x>245</x>
-      <y>0</y>
-      <width>121</width>
-      <height>90</height>
-     </rect>
-    </property>
-    <property name="frameShape">
-     <enum>QFrame::StyledPanel</enum>
-    </property>
-    <property name="frameShadow">
-     <enum>QFrame::Raised</enum>
-    </property>
-    <widget class="QLabel" name="label_8">
-     <property name="geometry">
-      <rect>
-       <x>10</x>
-       <y>20</y>
-       <width>101</width>
-       <height>16</height>
-      </rect>
-     </property>
-     <property name="text">
-      <string>Clear Prompts</string>
-     </property>
-     <property name="alignment">
-      <set>Qt::AlignCenter</set>
-     </property>
-    </widget>
-    <widget class="QPushButton" name="pushButton_clear">
-     <property name="geometry">
-      <rect>
-       <x>10</x>
-       <y>40</y>
-       <width>100</width>
-       <height>25</height>
-      </rect>
-     </property>
-     <property name="text">
-      <string>Clear</string>
-     </property>
-    </widget>
-   </widget>
-   <widget class="QFrame" name="frame_3">
-    <property name="geometry">
-     <rect>
-      <x>6</x>
-      <y>89</y>
-      <width>240</width>
-      <height>80</height>
-     </rect>
-    </property>
-    <property name="frameShape">
-     <enum>QFrame::StyledPanel</enum>
-    </property>
-    <property name="frameShadow">
-     <enum>QFrame::Raised</enum>
-    </property>
-    <widget class="QLabel" name="label_2">
-     <property name="geometry">
-      <rect>
-       <x>15</x>
-       <y>10</y>
-       <width>181</width>
-       <height>20</height>
-      </rect>
-     </property>
-     <property name="text">
-      <string>Output shapefile.(Append)</string>
-     </property>
-    </widget>
-    <widget class="QLineEdit" name="path_out">
-     <property name="geometry">
-      <rect>
-       <x>6</x>
-       <y>37</y>
-       <width>131</width>
-       <height>23</height>
-      </rect>
-     </property>
-     <property name="text">
-      <string/>
-     </property>
-    </widget>
-    <widget class="QToolButton" name="pushButton_find_file">
-     <property name="geometry">
-      <rect>
-       <x>140</x>
-       <y>37</y>
-       <width>37</width>
-       <height>25</height>
-      </rect>
-     </property>
-     <property name="text">
-      <string>...</string>
-     </property>
-    </widget>
-    <widget class="QPushButton" name="pushButton_load_file">
-     <property name="geometry">
-      <rect>
-       <x>180</x>
-       <y>37</y>
-       <width>55</width>
-       <height>25</height>
-      </rect>
-     </property>
-     <property name="text">
-      <string>Load</string>
-     </property>
-    </widget>
-   </widget>
-   <widget class="QFrame" name="frame_6">
-    <property name="geometry">
-     <rect>
-      <x>245</x>
-      <y>89</y>
-      <width>240</width>
-      <height>80</height>
-     </rect>
-    </property>
-    <property name="frameShape">
-     <enum>QFrame::StyledPanel</enum>
-    </property>
-    <property name="frameShadow">
-     <enum>QFrame::Raised</enum>
-    </property>
-    <widget class="QLabel" name="label_5">
-     <property name="geometry">
-      <rect>
-       <x>20</x>
-       <y>10</y>
-       <width>111</width>
-       <height>16</height>
-      </rect>
-     </property>
-     <property name="text">
-      <string>Feature Folder</string>
-     </property>
-    </widget>
-    <widget class="QLineEdit" name="path_feature">
-     <property name="geometry">
-      <rect>
-       <x>5</x>
-       <y>37</y>
-       <width>131</width>
-       <height>23</height>
-      </rect>
-     </property>
-     <property name="text">
-      <string/>
-     </property>
-    </widget>
-    <widget class="QToolButton" name="pushButton_find_feature">
-     <property name="geometry">
-      <rect>
-       <x>141</x>
-       <y>37</y>
-       <width>37</width>
-       <height>25</height>
-      </rect>
-     </property>
-     <property name="text">
-      <string>...</string>
-     </property>
-    </widget>
-    <widget class="QPushButton" name="pushButton_load_feature">
-     <property name="geometry">
-      <rect>
-       <x>181</x>
-       <y>37</y>
-       <width>55</width>
-       <height>25</height>
-      </rect>
-     </property>
-     <property name="text">
-      <string>Load</string>
-     </property>
-    </widget>
-   </widget>
-   <widget class="QFrame" name="frame_7">
-    <property name="geometry">
-     <rect>
-      <x>484</x>
-      <y>0</y>
-      <width>111</width>
-      <height>90</height>
-     </rect>
-    </property>
-    <property name="frameShape">
-     <enum>QFrame::StyledPanel</enum>
-    </property>
-    <property name="frameShadow">
-     <enum>QFrame::Raised</enum>
-    </property>
-    <widget class="QRadioButton" name="radioButton_enable">
-     <property name="geometry">
-      <rect>
-       <x>20</x>
-       <y>30</y>
-       <width>81</width>
-       <height>31</height>
-      </rect>
-     </property>
-     <property name="text">
-      <string>Enable</string>
-     </property>
-     <property name="checked">
-      <bool>false</bool>
-     </property>
-    </widget>
-   </widget>
-   <widget class="QWidget" name="">
-    <property name="geometry">
-     <rect>
-      <x>0</x>
-      <y>0</y>
-      <width>2</width>
-      <height>2</height>
-     </rect>
-    </property>
-    <layout class="QHBoxLayout" name="horizontalLayout"/>
-   </widget>
-   <widget class="QWidget" name="">
-    <property name="geometry">
-     <rect>
-      <x>0</x>
-      <y>0</y>
-      <width>2</width>
-      <height>2</height>
-     </rect>
-    </property>
-    <layout class="QHBoxLayout" name="horizontalLayout_2"/>
-   </widget>
-   <widget class="QWidget" name="">
-    <property name="geometry">
-     <rect>
-      <x>0</x>
-      <y>0</y>
-      <width>2</width>
-      <height>2</height>
-     </rect>
-    </property>
-    <layout class="QHBoxLayout" name="horizontalLayout_3"/>
-   </widget>
-  </widget>
- </widget>
- <resources/>
- <connections/>
-</ui>