From 077f7aa339142d956d8ddd71a6ff90ddf11b3d66 Mon Sep 17 00:00:00 2001
From: pratas <6882743+pratas@users.noreply.github.com>
Date: Fri, 10 May 2024 15:12:50 +0100
Subject: [PATCH] info
---
README.md | 37 +++++++++++++++++++++++++++++++++++++
1 file changed, 37 insertions(+)
diff --git a/README.md b/README.md
index ff6d558..5157054 100644
--- a/README.md
+++ b/README.md
@@ -288,6 +288,43 @@ The extension of compressing FASTA and FASTQ data contains a menu to expose the
./JARVIS3.sh --help
+This will ouput the following menu
+
+ -------------------------------------------------------
+
+ JARVIS3, v3.6. High reference-free compression of DNA
+ sequences, FASTA data, and FASTQ data.
+
+ Program options ---------------------------------------
+
+ -h, --help Show this,
+ -a, --about Show program information,
+ -c, --install Install/compile programs,
+ -s, --show Show compression levels,
+
+ -l , --level JARVIS3 compression level,
+ -b , --block Block size to be splitted,
+ -t , --threads Number of JARVIS3 threads,
+
+ -dn, --dna Assume DNA sequence type,
+ -fa, --fasta Assume FASTA data type,
+ -fq, --fastq Assume FASTQ data type,
+ -au, --automatic Detect data type (def),
+
+ -d, --decompress Decompression mode,
+
+ Input options -----------------------------------------
+
+ -i , --input Input DNA filename.
+
+ Example -----------------------------------------------
+
+ ./JARVIS3.sh --block 16MB -t 8 -i sample.seq
+ ./JARVIS3.sh --decompress -t 4 -i sample.seq.tar
+
+ -------------------------------------------------------
+
+
Preparing JARVIS3 for FASTA and FASTQ:
./JARVIS3.sh --install