Dockerfile_v5.9.0

# Install anaconda Python stack and some other useful tools
FROM jupyter/base-notebook

USER root
RUN apt-get update && \
  apt-get install -y dialog net-tools build-essential
USER jovyan


# Install various things
RUN conda install -y -c conda-forge \
  scipy \
  compilers \
  lapack \
  vim \
  nano \
  git \
  tar \
  curl \
  nose \
  xarray \
  ffmpeg

# Install additional packages useful with GeoClaw:

RUN conda install -c conda-forge \
  netcdf4 \
  netcdf-fortran \
  cartopy \
  pyproj \
  rasterio

# set env variables
ENV CLAW ${HOME}/clawpack-v5-9-0
ENV NETCDF4_DIR /opt/conda
ENV FC gfortran
# this is needed to find libraries when building geoclaw (particularly lapack)
ENV LIB_PATHS /opt/conda/lib

# Install clawpack-v5.9.0 (into $HOME/clawpack-v5-9-0):
RUN pip install --src=/${HOME}/ --user -e \
    git+https://github.com/clawpack/clawpack.git@v5.9.0#egg=clawpack-v5.9.0 \
    --use-deprecated=legacy-resolver

# set prompt:
RUN echo 'export PS1="jovyan $ "' >> ~/.bashrc

WORKDIR ${CLAW}
# Clone the apps repository (with master checked out):
RUN git clone https://github.com/clawpack/apps.git 

WORKDIR ${HOME}

# fix a few things for git:
RUN git config --file .gitconfig core.pager more
RUN git config --file .gitconfig core.editor vim

# Add packages needed for the book http://www.clawpack.org/riemann_book/

RUN git clone https://github.com/ipython-contrib/jupyter_contrib_nbextensions.git
RUN pip install ipywidgets
RUN pip install --user -e jupyter_contrib_nbextensions

ENV PATH ${PATH}:/home/jovyan/.local/bin
RUN pip install "traitlets>=5.0" "nbformat>=5.0" "jupyter-core>=4.6.0" "jupyter-client>=6.1.5"
RUN jupyter contrib nbextension install --user
RUN jupyter nbextension enable widgetsnbextension --py
RUN jupyter nbextension enable equation-numbering/main


# Add book's files
RUN git clone --depth=1 https://github.com/clawpack/riemann_book
RUN pip install --user --no-cache-dir -r $HOME/riemann_book/requirements.txt


CMD [ "/bin/bash" ]