cannot instrument with -optTrackIO

[antonl321]

Hi All,

I trying to instrument a code with with IO wrappers buy using
export TAU_OPTIONS=-optTrackIO...

I'm using intel 2021.2 and hpcx2.9.0

I have configured tau with I wrappers. At the compile stag I get the following error

Executing> ifort t2.o @/home/atosla/Tools/TAU/tau/x86_64/lib/wrappers/io_wrapper/link_options.tau -L/home/atosla/Tools/TAU/tau/x86_64/lib/shared-hpcx2.9.0-intel2021.2-iow-icpc-mpi-pthread -lTAU -lTAU-pthread -Wl,-rpath,/home/atosla/Tools/TAU/tau/x86_64/lib/shared-hpcx2.9.0-intel2021.2-iow-icpc-mpi-pthread -L/home/atosla/Tools/TAU/tau/x86_64/lib -lTauMpi-hpcx2.9.0-intel2021.2-iow-icpc-mpi-pthread -I/lus/h1resw02/bm/atosla/builds/SP-2-2021-08-31-082046/ECMWF-2017/RAPS18/flexbuild/external/pe/hpcx-v2.9.0-gcc-MLNX_OFED_LINUX-5.1-0.6.6.0-redhat8.1-x86_64/ompi-icc/include -I/lus/h1resw02/bm/atosla/builds/SP-2-2021-08-31-082046/ECMWF-2017/RAPS18/flexbuild/external/pe/hpcx-v2.9.0-gcc-MLNX_OFED_LINUX-5.1-0.6.6.0-redhat8.1-x86_64/ompi-icc/lib -L/usr//lib64 -Wl,-rpath -Wl,/usr//lib64 -Wl,-rpath -Wl,/lus/h1resw02/bm/atosla/builds/SP-2-2021-08-31-082046/ECMWF-2017/RAPS18/flexbuild/external/pe/hpcx-v2.9.0-gcc-MLNX_OFED_LINUX-5.1-0.6.6.0-redhat8.1-x86_64/ompi-icc/lib -Wl,--enable-new-dtags -L/lus/h1resw02/bm/atosla/builds/SP-2-2021-08-31-082046/ECMWF-2017/RAPS18/flexbuild/external/pe/hpcx-v2.9.0-gcc-MLNX_OFED_LINUX-5.1-0.6.6.0-redhat8.1-x86_64/ompi-icc/lib
-lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -L/home/atosla/Tools/TAU/tau/x86_64/lib -lTauMpi-hpcx2.9.0-intel2021.2-iow-icpc-mpi-pthread -L/lus/h1resw02/bm/atosla/builds/SP-2-2021-08-31-082046/ECMWF-2017/RAPS18/flexbuild/external/pe/hpcx-v2.9.0-gcc-MLNX_OFED_LINUX-5.1-0.6.6.0-redhat8.1-x86_64/ompi-icc/lib -lmpi -lmpi_cxx -Wl,-rpath,/lus/h1resw02/bm/atosla/builds/SP-2-2021-08-31-082046/ECMWF-2017/RAPS18/flexbuild/external/pe/hpcx-v2.9.0-gcc-MLNX_OFED_LINUX-5.1-0.6.6.0-redhat8.1-x86_64/ompi-icc/lib -lpthread -ldl -L/home/atosla/Tools/TAU/tau/x86_64/binutils-2.36/lib -L/home/atosla/Tools/TAU/tau/x86_64/binutils-2.36/lib64 -Wl,-rpath,/home/atosla/Tools/TAU/tau/x86_64/binutils-2.36/lib -Wl,-rpath,/home/atosla/Tools/TAU/tau/x86_64/binutils-2.36/lib64 -lbfd -liberty -lz -Wl,--export-dynamic -lrt -L/home/atosla/Tools/TAU/tau/x86_64/libunwind-1.3.1-icc/lib -lunwind -Wl,-rpath,/home/atosla/Tools/TAU/tau/x86_64/libunwind-1.3.1-icc/lib -L/home/atosla/Tools/TAU/tau/x86_64/otf2-icc/lib -lotf2 -lotf2 -Wl,-rpath,/home/atosla/Tools/TAU/tau/x86_64/otf2-icc/lib -L/home/atosla/Tools/TAU/tau/x86_64/libdwarf-icc/lib -Wl,-rpath,/home/atosla/Tools/TAU/tau/x86_64/libdwarf-icc/lib -ldwarf -lz -lelf -L/home/atosla/Tools/TAU/tau/x86_64/lib -lTauMpi-hpcx2.9.0-intel2021.2-iow-icpc-mpi-pthread -L/home/atosla/Tools/TAU/tau/x86_64/lib -lTauMpi-hpcx2.9.0-intel2021.2-iow-icpc-mpi-pthread -I/lus/h1resw02/bm/atosla/builds/SP-2-2021-08-31-082046/ECMWF-2017/RAPS18/flexbuild/external/pe/hpcx-v2.9.0-gcc-MLNX_OFED_LINUX-5.1-0.6.6.0-redhat8.1-x86_64/ompi-icc/include/openmpi -I/lus/h1resw02/bm/atosla/builds/SP-2-2021-08-31-082046/ECMWF-2017/RAPS18/flexbuild/external/pe/hpcx-v2.9.0-gcc-MLNX_OFED_LINUX-5.1-0.6.6.0-redhat8.1-x86_64/ompi-icc/include/openmpi/opal/mca/hwloc/hwloc201/hwloc/include -I/lus/h1resw02/bm/atosla/builds/SP-2-2021-08-31-082046/ECMWF-2017/RAPS18/flexbuild/external/pe/hpcx-v2.9.0-gcc-MLNX_OFED_LINUX-5.1-0.6.6.0-redhat8.1-x86_64/ompi-icc/include -pthread -L/usr//lib64 -Wl,-rpath -Wl,/usr//lib64 -Wl,-rpath -Wl,/lus/h1resw02/bm/atosla/builds/SP-2-2021-08-31-082046/ECMWF-2017/RAPS18/flexbuild/external/pe/hpcx-v2.9.0-gcc-MLNX_OFED_LINUX-5.1-0.6.6.0-redhat8.1-x86_64/ompi-icc/lib -Wl,--enable-new-dtags -L/lus/h1resw02/bm/atosla/builds/SP-2-2021-08-31-082046/ECMWF-2017/RAPS18/flexbuild/external/pe/hpcx-v2.9.0-gcc-MLNX_OFED_LINUX-5.1-0.6.6.0-redhat8.1-x86_64/ompi-icc/lib -lmpi_cxx -lmpi -L/lus/h1resw02/bm/atosla/builds/SP-2-2021-08-31-082046/ECMWF-2017/RAPS18/flexbuild/external/pe/hpcx-v2.9.0-gcc-MLNX_OFED_LINUX-5.1-0.6.6.0-redhat8.1-x86_64/ompi-icc/lib -lmpi -lmpi_cxx -Wl,-rpath,/lus/h1resw02/bm/atosla/builds/SP-2-2021-08-31-082046/ECMWF-2017/RAPS18/flexbuild/external/pe/hpcx-v2.9.0-gcc-MLNX_OFED_LINUX-5.1-0.6.6.0-redhat8.1-x86_64/ompi-icc/lib -L/usr/lib/gcc/x86_64-redhat-linux/8/ -L/usr/bin/../lib64 -lstdc++ -lgcc_s -L/home/atosla/Tools/TAU/tau/x86_64/lib/static-hpcx2.9.0-intel2021.2-iow-icpc-mpi-pthread -Wl,-rpath,/home/atosla/Tools/TAU/tau/x86_64/lib/shared-hpcx2.9.0-intel2021.2-iow-icpc-mpi-pthread @/home/atosla/Tools/TAU/tau/x86_64/lib/wrappers/io_wrapper/link_options.tau -o t2.x-tau
/usr/local/apps/intel/oneAPI_2021_update2/compiler/2021.2.0/linux/bin/intel64/../../compiler/lib/intel64_lin/libifcoremt.a(for_rseq.o): In function `for_read_seq':
for_rseq.c:(.text+0xe0b): undefined reference to `__wrap_lseek64'
for_rseq.c:(.text+0xf4d): undefined reference to `__wrap_write'
for_rseq.c:(.text+0xfae): undefined reference to `__wrap_write'
/usr/local/apps/intel/oneAPI_2021_update2/compiler/2021.2.0/linux/bin/intel64/../../compiler/lib/intel64_lin/libifcoremt.a(for_wseq.o): In function `for_write_seq':
...

$ env | grep TAU
TAU_OPTIONS=-optTrackIO -optPdtF95Opts="-R free" -optVerbose -optCompInst -optShared -optRevert -optTauIncludes=-I/home/atosla/builds/intel2021.2/RAPS18/flexbuild/external/pe/hpcx-v2.9.0-gcc-MLNX_OFED_LINUX-5.1-0.6.6.0-redhat8.1-x86_64/ompi-icc/lib
TAU_MAKEFILE=/home/atosla/Tools/TAU/tau/x86_64/lib/Makefile.tau-hpcx2.9.0-intel2021.2-iow-icpc-mpi-pthread

Any hints? It seems that I miss a library..

Lucian Anton

[wspear]

There appears to be an issue with linking optTrackIo and Fortran. It happens with gnu as well as Intel. We're looking into it.

Reproducer:

./configure -iowrapper -bfd=download
export TAU_OPTIONS=-optTrackIO -optVerbose
tau_f90.sh foo.f90

foo.f90:

export

        PROGRAM main
         IMPLICIT NONE

         INTEGER :: A = 123456789
         REAL    :: F = 123.456789
         double precision :: D = 123.456789123456789D0

         print *, "======== Using PRINT format string ========"

         print '(I4, X, F7.2, X, E30.19)', A, F, D

        END