Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Failing in precompiling dependencies #2271

Closed
jinshisai opened this issue Jun 24, 2024 · 2 comments
Closed

Failing in precompiling dependencies #2271

jinshisai opened this issue Jun 24, 2024 · 2 comments

Comments

@jinshisai
Copy link

Hi, I am interested in using Turing and suffering from an issue. When I installed Turing, I saw the following message:

Precompiling project...
✗ Libtask
✗ NNlib
✗ Tracker
✗ Bijectors
✗ DynamicPPL
✗ DistributionsAD
✗ Turing
152 dependencies successfully precompiled in 43 seconds
7 dependencies errored. To see a full report either run import Pkg; Pkg.precompile() or load the packages

I cannot use Turing because of these dependencies failing in precompiling. Could you please help to solve this issue?
The errors I faced when I tried using Turing in the Julia REPL are the followings. I am using M1 Mackbook pro and Julia v.1.7.3. Julia v.1.10.4 results a similar precompiling problem with a slightly different set of failing dependencies.

ERROR: LoadError: SystemError: opening file "~/.julia/packages/NNlib/FAI3o/deps/deps.jl": No such file or directory
Stacktrace:
  [1] systemerror(p::String, errno::Int32; extrainfo::Nothing)
    @ Base ./error.jl:174
  [2] #systemerror#68
    @ ./error.jl:173 [inlined]
  [3] systemerror
    @ ./error.jl:173 [inlined]
  [4] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Nothing, append::Nothing)
    @ Base ./iostream.jl:293
  [5] open
    @ ./iostream.jl:282 [inlined]
  [6] open(f::Base.var"#364#365"{String}, args::String; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
    @ Base ./io.jl:328
  [7] open
    @ ./io.jl:328 [inlined]
  [8] read
    @ ./io.jl:436 [inlined]
  [9] _include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./loading.jl:1249
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:418
 [11] include(x::String)
    @ NNlib ~/.julia/packages/NNlib/FAI3o/src/NNlib.jl:1
 [12] top-level scope
    @ ~/.julia/packages/NNlib/FAI3o/src/NNlib.jl:8
 [13] include
    @ ./Base.jl:418 [inlined]
 [14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
    @ Base ./loading.jl:1318
 [15] top-level scope
    @ none:1
 [16] eval
    @ ./boot.jl:373 [inlined]
 [17] eval(x::Expr)
    @ Base.MainInclude ./client.jl:453
 [18] top-level scope
    @ none:1
in expression starting at ~/.julia/packages/NNlib/FAI3o/src/NNlib.jl:1
ERROR: LoadError: Failed to precompile NNlib [872c559c-99b0-510c-b3b7-b6c96a88d5cd] to ~/.julia/compiled/v1.7/NNlib/jl_MLQfet.
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:33
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, ignore_loaded_modules::Bool)
    @ Base ./loading.jl:1466
  [3] compilecache(pkg::Base.PkgId, path::String)
    @ Base ./loading.jl:1410
  [4] _require(pkg::Base.PkgId)
    @ Base ./loading.jl:1120
  [5] require(uuidkey::Base.PkgId)
    @ Base ./loading.jl:1013
  [6] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:997
  [7] include(mod::Module, _path::String)
    @ Base ./Base.jl:418
  [8] include(x::String)
    @ Tracker ~/.julia/packages/Tracker/e5fg8/src/Tracker.jl:1
  [9] top-level scope
    @ ~/.julia/packages/Tracker/e5fg8/src/Tracker.jl:76
 [10] include
    @ ./Base.jl:418 [inlined]
 [11] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
    @ Base ./loading.jl:1318
 [12] top-level scope
    @ none:1
 [13] eval
    @ ./boot.jl:373 [inlined]
 [14] eval(x::Expr)
    @ Base.MainInclude ./client.jl:453
 [15] top-level scope
    @ none:1
in expression starting at ~/.julia/packages/Tracker/e5fg8/src/lib/array.jl:468
in expression starting at ~/.julia/packages/Tracker/e5fg8/src/Tracker.jl:1
ERROR: LoadError: Failed to precompile Tracker [9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c] to ~/.julia/compiled/v1.7/Tracker/jl_VqDPXD.
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:33
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, ignore_loaded_modules::Bool)
    @ Base ./loading.jl:1466
  [3] compilecache(pkg::Base.PkgId, path::String)
    @ Base ./loading.jl:1410
  [4] _require(pkg::Base.PkgId)
    @ Base ./loading.jl:1120
  [5] require(uuidkey::Base.PkgId)
    @ Base ./loading.jl:1013
  [6] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:997
  [7] include
    @ ./Base.jl:418 [inlined]
  [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
    @ Base ./loading.jl:1318
  [9] top-level scope
    @ none:1
 [10] eval
    @ ./boot.jl:373 [inlined]
 [11] eval(x::Expr)
    @ Base.MainInclude ./client.jl:453
 [12] top-level scope
    @ none:1
in expression starting at ~/.julia/packages/DistributionsAD/p5Y9r/src/DistributionsAD.jl:1
ERROR: LoadError: Failed to precompile DistributionsAD [ced4e74d-a319-5a8a-b0ac-84af2272839c] to ~/.julia/compiled/v1.7/DistributionsAD/jl_01tAL6.
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:33
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, ignore_loaded_modules::Bool)
    @ Base ./loading.jl:1466
  [3] compilecache(pkg::Base.PkgId, path::String)
    @ Base ./loading.jl:1410
  [4] _require(pkg::Base.PkgId)
    @ Base ./loading.jl:1120
  [5] require(uuidkey::Base.PkgId)
    @ Base ./loading.jl:1013
  [6] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:997
  [7] include
    @ ./Base.jl:418 [inlined]
  [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing)
    @ Base ./loading.jl:1318
  [9] top-level scope
    @ none:1
 [10] eval
    @ ./boot.jl:373 [inlined]
 [11] eval(x::Expr)
    @ Base.MainInclude ./client.jl:453
 [12] top-level scope
    @ none:1
in expression starting at ~/.julia/packages/Turing/GMBTf/src/Turing.jl:1
ERROR: Failed to precompile Turing [fce5fe82-541a-59a6-adf8-730c64b5f9a0] to ~/.julia/compiled/v1.7/Turing/jl_l4Tfwt.
Stacktrace:
 [1] error(s::String)
   @ Base ./error.jl:33
 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, ignore_loaded_modules::Bool)
   @ Base ./loading.jl:1466
 [3] compilecache(pkg::Base.PkgId, path::String)
   @ Base ./loading.jl:1410
 [4] _require(pkg::Base.PkgId)
   @ Base ./loading.jl:1120
 [5] require(uuidkey::Base.PkgId)
   @ Base ./loading.jl:1013
 [6] require(into::Module, mod::Symbol)
   @ Base ./loading.jl:997```
@Red-Portal
Copy link
Member

Have you tried with a fresh .julia directory?

@jinshisai
Copy link
Author

It was now fixed. This line ERROR: LoadError: SystemError: opening file "~/.julia/packages/NNlib/FAI3o/deps/deps.jl": No such file or directory Stacktrace: was the main issue and I arrived at here. ] build created the missing file, deps.jl, and now precompiling both NNlib and Turing went well.

Thanks for your reply. I am closing this issue.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@Red-Portal @jinshisai