pip-install.yml

# This workflow will install the package as is on the github default branch using pip

name: pip Install

on:
    push:
        paths: [ "requirements*.yml", "conda-env-create.yml", "requirements/requirement*.txt", "setup*py", "setup*cfg", "pytproject*toml", "MANIFEST*in"]

jobs:
  build:
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: true
      matrix:
        python-version: ["3.9", "3.10", "3.11", "3.12"]
        os: [ubuntu-22.04, windows-latest, macos-latest]
    steps:
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v3
      with:
        python-version: ${{ matrix.python-version }}
    - name: 🐧 Install OpenSlide & OpenJPEG
      if: runner.os == 'Linux'
      run: |
        sudo apt update
        sudo apt-get install -y libopenslide-dev openslide-tools libopenjp2-7 libopenjp2-tools
        python -m pip install --upgrade pip
    - name: 🍎 Install OpenSlide & OpenJPEG
      if: runner.os == 'macOS'
      run: |
        brew install openslide openjpeg
        python -m pip install --upgrade pip
    - name: 🪟 Install OpenJPEG
      if: runner.os == 'Windows'
      run: |
        # Install OpenJPEG
        git clone https://github.com/uclouvain/openjpeg.git
        cd openjpeg
        mkdir build
        cd build
        cmake -G "MinGW Makefiles" .. -DCMAKE_BUILD_TYPE=Release
        ls
        make -j4
        make install
        make clean
    - name: 🪟 Install OpenSlide
      if: runner.os == 'Windows'
      run: |
        choco install wget --no-progress
        wget https://github.com/openslide/openslide-winbuild/releases/download/v20220811/openslide-win64-20220811.zip
        7z x openslide-win64-20220811.zip
        ls openslide-win64-20220811
        # Add to PATH
        echo "$(realpath ./openslide-win64-20220811/bin)" >> $GITHUB_PATH
        echo "$(realpath ./openslide-win64-20220811/lib)" >> $GITHUB_PATH
        # Install
        mkdir "C:\Program Files\openslide"
        Copy-Item -Path ".\openslide-win64-20220811\*" -Destination "C:\Program Files\openslide" -Recurse
        ls "C:/Program Files/openslide"
    - name: 🪟 Install SQLite Shell
      if: runner.os == 'Windows'
      run: choco install sqlite.shell --no-progress
    - name: SQLite Version Information
      run: |
        sqlite3 --version
        sqlite3 ":memory:" -list ".output stdout" "pragma compile_options" ".exit"
    - name: OpenSlide Version Information
      if: runner.os == 'Linux'
      run: openslide-quickhash1sum --version
    - name: OpenJPEG Version Information
      continue-on-error: true  # This -h option has exit code 1 for some reason
      run: opj_dump -h
    - name: pip Install From GitHub Repo on Linux and macOS
      if: runner.os != 'Windows'
      run: python -m pip install git+https://github.com/TissueImageAnalytics/tiatoolbox@${GITHUB_REF_NAME}
    - name: pip Install From GitHub on Windows
      if: runner.os == 'Windows'
      run: python -m pip install git+https://github.com/TissueImageAnalytics/tiatoolbox@$env:GITHUB_REF_NAME
    - name: Test TIAToolbox Import
      shell: python
      run: |
        import os
        if hasattr(os, "add_dll_directory"):
          # Required for Python>=3.8 on Windows
          with os.add_dll_directory(r"D:\a\tiatoolbox\tiatoolbox\openslide-win64-20220811\bin"):
            import tiatoolbox
        else:
          os.environ["PATH"] = r"D:\a\tiatoolbox\tiatoolbox\openslide-win64-20220811\bin;"
          import tiatoolbox