Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Expression fails with "this project has asked CMake to find a package configuration file provided by "DOLFIN", but CMake did not find one." #42

Open
cmey opened this issue Feb 22, 2018 · 1 comment

Comments

@cmey
Copy link

cmey commented Feb 22, 2018

Environment:

julia> Pkg.status("FEniCS")
 - FEniCS                        0.1.0

julia> versioninfo()
Julia Version 0.6.2
Commit d386e40c17 (2017-12-13 18:08 UTC)
Platform Info:
  OS: macOS (x86_64-apple-darwin14.5.0)
  CPU: Intel(R) Core(TM) i7-7567U CPU @ 3.50GHz
  WORD_SIZE: 64
  BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY Prescott)
  LAPACK: libopenblas64_
  LIBM: libopenlibm
  LLVM: libLLVM-3.9.1 (ORCJIT, broadwell)

Steps to reproduce:

using FEniCS
mesh = UnitSquareMesh(8,8)
V = FunctionSpace(mesh,"P",1)
u_D = Expression("1+x[0]*x[0]+2*x[1]*x[1]", degree=2)

Unexpected error message:

ERROR: PyError (ccall(@pysym(:PyObject_Call), PyPtr, (PyPtr, PyPtr, PyPtr), o, arg, kw)) <type 'exceptions.RuntimeError'>
RuntimeError("In instant.recompile: The module did not compile with command 'cmake -DDEBUG=TRUE .', see '/Users/cmey/.cache/instant/python2.7/error/dolfin_13c8f1f6cddc673505d96f856bef922a9fa66419/compile.log'",)
  File "/Users/cmey/.julia/v0.6/Conda/deps/usr/lib/python2.7/site-packages/dolfin/functions/expression.py", line 679, in __new__
    mpi_comm=kwargs.get("mpi_comm"))
  File "/Users/cmey/.julia/v0.6/Conda/deps/usr/lib/python2.7/site-packages/dolfin/compilemodules/expressions.py", line 266, in compile_expressions
    mpi_comm=mpi_comm)
  File "/Users/cmey/.julia/v0.6/Conda/deps/usr/lib/python2.7/site-packages/dolfin/compilemodules/expressions.py", line 183, in compile_expression_code
    mpi_comm=mpi_comm)
  File "/Users/cmey/.julia/v0.6/Conda/deps/usr/lib/python2.7/site-packages/dolfin/compilemodules/jit.py", line 70, in mpi_jit
    return local_jit(*args, **kwargs)
  File "/Users/cmey/.julia/v0.6/Conda/deps/usr/lib/python2.7/site-packages/dolfin/compilemodules/compilemodule.py", line 603, in compile_extension_module
    **instant_kwargs)
  File "/Users/cmey/.julia/v0.6/Conda/deps/usr/lib/python2.7/site-packages/instant/build.py", line 577, in build_module
    build_system)
  File "/Users/cmey/.julia/v0.6/Conda/deps/usr/lib/python2.7/site-packages/instant/build.py", line 158, in recompile
    instant_error(msg % (cmd, compile_log_filename_dest))
  File "/Users/cmey/.julia/v0.6/Conda/deps/usr/lib/python2.7/site-packages/instant/output.py", line 96, in instant_error
    raise RuntimeError(text)

Error log (compile.log) says:

-- The C compiler identification is AppleClang 9.0.0.9000039
-- The CXX compiler identification is AppleClang 9.0.0.9000039
-- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
-- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
-- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Error at CMakeLists.txt:12 (FIND_PACKAGE):
  By not providing "FindDOLFIN.cmake" in CMAKE_MODULE_PATH this project has
  asked CMake to find a package configuration file provided by "DOLFIN", but
  CMake did not find one.

  Could not find a package configuration file provided by "DOLFIN" with any
  of the following names:

    DOLFINConfig.cmake
    dolfin-config.cmake

  Add the installation prefix of "DOLFIN" to CMAKE_PREFIX_PATH or set
  "DOLFIN_DIR" to a directory containing one of the above files.  If "DOLFIN"
  provides a separate development package or SDK, be sure it has been
  installed.

It looks like I need to manually install DOLFIN. Is that expected or should it get installed automatically during Pkg.add("FEniCS")?
If the former, any pointers on how to install it on macOS? It looks like it's not available on brew.

Best,
Christophe

@ChrisRackauckas
Copy link
Member

Is that related to mshr?

You might want to just install the FEniCS Docker and put Julia on that, and see if that installation process is easier. FEniCS seems to really push their Docker install as "the true install", so maybe we need to just use it.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants