Fix DeprecationWarning introduced by Qiskit 1.3

[jyu00]

What is the expected feature or enhancement?

Qiskit 1.3 deprecated the Pulse package, causing a bunch of deprecation warnings to be raised when the transpiler passes in this package are used. For example:

/Users/davidmckay/miniforge3/envs/qiskit_latest/lib/python3.10/site-packages/qiskit_ibm_runtime/transpiler/passes/scheduling/block_base_padder.py:265: DeprecationWarning: The property ``qiskit.circuit.instruction.Instruction.condition_bits`` is deprecated as of qiskit 1.3.0. It will be removed in 2.0.0.
  if node.op.condition_bits or isinstance(node.op, ControlFlowOp):
/Users/davidmckay/miniforge3/envs/qiskit_latest/lib/python3.10/site-packages/qiskit_ibm_runtime/transpiler/passes/scheduling/block_base_padder.py:272: DeprecationWarning: The method ``qiskit.dagcircuit.dagcircuit.DAGCircuit.has_calibration_for`` is deprecated as of qiskit 1.3.0. It will be removed in Qiskit 2.0.0. The entire Qiskit Pulse package is being deprecated and this is a dependency on the package.
  if self._block_dag.has_calibration_for(node):
/Users/davidmckay/miniforge3/envs/qiskit_latest/lib/python3.10/site-packages/qiskit_ibm_runtime/transpiler/passes/scheduling/block_base_padder.py:540: DeprecationWarning: The property ``qiskit.circuit.instruction.Instruction.condition_bits`` is deprecated as of qiskit 1.3.0. It will be removed in 2.0.0.
  self._conditional_block = bool(node.op.condition_bits)

Acceptance criteria

No Qiskit deprecation warnings are issued when using functions in this package.

[kt474]

Is this a duplicate with #2069?

[jyu00]

Is pulse the only deprecation warning we get from Qiskit 1.3?

[1ucian0]

mostly. Like test.unit.test_data_serialization.TestDataSerialization triggers PendingDeprecationWarnings:

2025-01-08T05:06:32.7612061Z test_coder_qc (test.unit.test_data_serialization.TestDataSerialization)
2025-01-08T05:06:32.7619612Z Test runtime encoder and decoder for circuits. ... /home/runner/work/qiskit-ibm-runtime/qiskit-ibm-runtime/test/unit/test_data_serialization.py:110: PendingDeprecationWarning: The class ``qiskit.circuit.library.n_local.efficient_su2.EfficientSU2`` is pending deprecation as of Qiskit 1.3. It will be marked deprecated in a future release, and then removed no earlier than 3 months after the release date. Use the function qiskit.circuit.library.efficient_su2 instead.
2025-01-08T05:06:32.7622547Z   unbound = EfficientSU2(num_qubits=4, reps=1, entanglement="linear")
2025-01-08T05:06:32.7625082Z /opt/hostedtoolcache/Python/3.9.20/x64/lib/python3.9/site-packages/qiskit/circuit/library/n_local/efficient_su2.py:258: PendingDeprecationWarning: The class ``qiskit.circuit.library.n_local.two_local.TwoLocal`` is pending deprecation as of Qiskit 1.3. It will be marked deprecated in a future release, and then removed no earlier than 3 months after the release date. Use the function qiskit.circuit.library.n_local instead.
2025-01-08T05:06:32.7627503Z   super().__init__(
2025-01-08T05:06:32.7629718Z /opt/hostedtoolcache/Python/3.9.20/x64/lib/python3.9/site-packages/qiskit/circuit/library/n_local/two_local.py:216: PendingDeprecationWarning: The class ``qiskit.circuit.library.n_local.n_local.NLocal`` is pending deprecation as of Qiskit 1.3. It will be marked deprecated in a future release, and then removed no earlier than 3 months after the release date. Use the function qiskit.circuit.library.n_local instead.
2025-01-08T05:06:32.7631832Z   super().__init__(

[jyu00]

The Qiskit PR that deprecated pulse restructured their DD passes to avoid using pulse modules. Presumably we can do something similar.