diff --git a/examples/integrations/itk/IDC_Seg_Primer_Examples.ipynb b/examples/integrations/itk/IDC_Seg_Primer_Examples.ipynb
index 2093a0ed..ad87864c 100644
--- a/examples/integrations/itk/IDC_Seg_Primer_Examples.ipynb
+++ b/examples/integrations/itk/IDC_Seg_Primer_Examples.ipynb
@@ -19,7 +19,7 @@
},
{
"cell_type": "code",
- "execution_count": 1,
+ "execution_count": 7,
"id": "c98ddf17-b608-448c-9253-cd7b806b96db",
"metadata": {
"colab": {
@@ -33,12 +33,12 @@
"source": [
"import sys\n",
"\n",
- "!{sys.executable} -m pip install -q pooch itk-io \"itkwidgets[all]>=1.0a49\" pydicom pydicom-seg numpy"
+ "!{sys.executable} -m pip install -q pooch itk-io \"itkwidgets[all]>=1.0a53\" \"pydicom<=2\" pydicom-seg numpy"
]
},
{
"cell_type": "code",
- "execution_count": 2,
+ "execution_count": 8,
"id": "4120f9bf-e7f3-48a1-ab14-ce57b4d95621",
"metadata": {
"id": "4120f9bf-e7f3-48a1-ab14-ce57b4d95621",
@@ -99,7 +99,7 @@
},
{
"cell_type": "code",
- "execution_count": 3,
+ "execution_count": 9,
"id": "1beba815-ea88-45f0-9dae-84038a13ba3d",
"metadata": {},
"outputs": [],
@@ -118,7 +118,7 @@
},
{
"cell_type": "code",
- "execution_count": 4,
+ "execution_count": 10,
"id": "c214d4f2-b6fc-4e02-963f-1738ce02957e",
"metadata": {},
"outputs": [],
@@ -137,7 +137,7 @@
},
{
"cell_type": "code",
- "execution_count": 5,
+ "execution_count": 11,
"id": "0bbe6f14-a34e-4280-bc21-7343a78af88b",
"metadata": {},
"outputs": [
@@ -145,21 +145,21 @@
"name": "stdout",
"output_type": "stream",
"text": [
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- "Connecting to github.com (github.com)|140.82.113.3|:443... connected.\n",
+ "--2024-10-21 17:16:27-- https://github.com/peak/s5cmd/releases/download/v2.0.0/s5cmd_2.0.0_Linux-64bit.tar.gz\n",
+ "Resolving github.com (github.com)... 140.82.112.3\n",
+ "Connecting to github.com (github.com)|140.82.112.3|:443... connected.\n",
"HTTP request sent, awaiting response... 302 Found\n",
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- "Connecting to objects.githubusercontent.com (objects.githubusercontent.com)|185.199.109.133|:443... connected.\n",
+ "Location: https://objects.githubusercontent.com/github-production-release-asset-2e65be/73909333/2e177ae0-614f-48ba-92fd-04cf9bf41529?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=releaseassetproduction%2F20241021%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20241021T211627Z&X-Amz-Expires=300&X-Amz-Signature=f0ca8191cf05701f9657800125c96f5a898485823f8f347115a37ad97d2ea62a&X-Amz-SignedHeaders=host&response-content-disposition=attachment%3B%20filename%3Ds5cmd_2.0.0_Linux-64bit.tar.gz&response-content-type=application%2Foctet-stream [following]\n",
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"\n",
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+ "s5cmd_2.0.0_Linux-6 100%[===================>] 4.08M --.-KB/s in 0.08s \n",
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"\n"
]
}
@@ -171,7 +171,7 @@
},
{
"cell_type": "code",
- "execution_count": 6,
+ "execution_count": 12,
"id": "aOnyE_7hllIl",
"metadata": {
"id": "aOnyE_7hllIl",
@@ -189,7 +189,7 @@
},
{
"cell_type": "code",
- "execution_count": 5,
+ "execution_count": 13,
"id": "RJzY1NUmneKZ",
"metadata": {
"id": "RJzY1NUmneKZ",
@@ -202,7 +202,7 @@
},
{
"cell_type": "code",
- "execution_count": 7,
+ "execution_count": 14,
"id": "0e588f46-01b4-4ae4-886b-63742d59984d",
"metadata": {
"tags": []
@@ -222,7 +222,7 @@
},
{
"cell_type": "code",
- "execution_count": 8,
+ "execution_count": 15,
"id": "264e1ce0-dd11-4197-a033-574d601cab50",
"metadata": {
"colab": {
@@ -238,11 +238,11 @@
"data": {
"text/html": [
"\n",
- " 
\n",
+ " 
\n",
" \n",
@@ -258,7 +258,7 @@
{
"data": {
"application/javascript": [
- "window.connectPlugin && window.connectPlugin(\"7a4d3388-37d8-410f-9cd2-0f4c8cb74f46\")"
+ "window.connectPlugin && window.connectPlugin(\"a205f07b-639e-4397-b96d-a6b63f9cb300\")"
],
"text/plain": [
""
@@ -270,7 +270,7 @@
{
"data": {
"text/html": [
- ""
+ ""
],
"text/plain": [
""
@@ -286,9 +286,13 @@
},
{
"cell_type": "code",
- "execution_count": 9,
+ "execution_count": 16,
"id": "de4dfee3-1f5e-41d4-a599-02d1d9cbdf0e",
- "metadata": { "tags": ["skip-execution"] },
+ "metadata": {
+ "tags": [
+ "skip-execution"
+ ]
+ },
"outputs": [],
"source": [
"segthor_viewer.set_image_color_range([-1260, 2385])\n",
@@ -319,7 +323,11 @@
"cell_type": "code",
"execution_count": 10,
"id": "03988ee1-90eb-4e75-99af-2c56d932fad9",
- "metadata": { "tags": ["skip-execution"] },
+ "metadata": {
+ "tags": [
+ "skip-execution"
+ ]
+ },
"outputs": [],
"source": [
"head_image_file = pooch.retrieve('https://data.kitware.com/api/v1/file/61b61cd74acac99f42a7ec84/download',\n",
@@ -332,7 +340,11 @@
"cell_type": "code",
"execution_count": 11,
"id": "091d4d0e-fdc5-4034-b6a5-a4d7350b98d5",
- "metadata": { "tags": ["skip-execution"] },
+ "metadata": {
+ "tags": [
+ "skip-execution"
+ ]
+ },
"outputs": [
{
"data": {
@@ -388,7 +400,11 @@
"cell_type": "code",
"execution_count": null,
"id": "0f4633af-fd01-4ab5-8202-3fb642276040",
- "metadata": { "tags": ["skip-execution"] },
+ "metadata": {
+ "tags": [
+ "skip-execution"
+ ]
+ },
"outputs": [],
"source": []
}
@@ -412,7 +428,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.8.10"
+ "version": "3.10.12"
}
},
"nbformat": 4,