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Re-evaluate SAM/BAM processing tools #23

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mfoll opened this issue Dec 21, 2018 · 1 comment
Open

Re-evaluate SAM/BAM processing tools #23

mfoll opened this issue Dec 21, 2018 · 1 comment

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@mfoll
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mfoll commented Dec 21, 2018

Check which tools among samblaster sambamba biobambam samtools elPrep etc. is the most efficient as things might have changed a bit in the last years. See this paper: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4504710/
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mfoll commented Apr 23, 2020 •
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https://github.com/ssadedin/bazam seems a good option for BAM -> FASTQ

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