Creating Singularity container from def file

[pshukla63]

Hello there,
I could not find this tool on the Singularity Hub (singularity pull shub://IARCbioinfo/SComatic-nf:latest) so I tried to create a singularity container from the singularity definition file in this repository but it is taking really long to solve the environment. Is there something I could do to make it go faster or access a Singularity container in another way?

Thank you so much for this tool and your help!

[nalcala]

Hi pshukla63, sorry for the delay in responding. It appears the docker and singularity images are not in a finished state right now... sorry for the inconvenience, I will finish them (probably next month when I will run this tool again) and in the meantime put a note in the readme that this is work in progress. For now I suggest that you build your conda env, and then you can use docker/singularity to create a container based on this env just like we do here.

Thanks for using our pipelines! I hope it will help nonetheless

Nicolas