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*.aux
*.pyc
.Rproj.user
.metadata
/**/.vscode/
/**/__pycache__/
/.vscode/
/.VSCodeCounter/
/BuildSystem/.project
/BuildSystem/Casal2/
/BuildSystem/Doxygen
/BuildSystem/bin
/BuildSystem/config.iss
/BuildSystem/icon.o
R-libraries/Casal2.Rcheck/
/Documentation/**/*.aux
/Documentation/**/*.bbl
/Documentation/**/*.blg
/Documentation/**/*.idx
/Documentation/**/*.ilg
/Documentation/**/*.ind
/Documentation/**/*.log
/Documentation/**/*.out
/Documentation/**/*.toc
/Documentation/**/*.tps
/Documentation/**/Version.tex
/Documentation/**/syntax_errors.txt
/Documentation/UserManual/Syntax/
/FrontEnd/icon.o
/R-libraries/.Rproj.user
/RemoteSystemsTempFiles
/TestModels/**/estimate.log
/TestModels/**/run.log
/ThirdParty/adolc/*.log
/ThirdParty/adolc/msys/
/ThirdParty/betadiff/*.log
/ThirdParty/boost/*.log
/ThirdParty/boost/boost_1_71_0
/ThirdParty/boost/boost_1_71_0/*
/ThirdParty/googletest_googlemock/*.log
/ThirdParty/googletest_googlemock/googletest-release-1.8.1/
/ThirdParty/parser/*.log
/CASAL2/.cproject
/CASAL2/.project
BuildSystem/*.log
BuildSystem/CMakeCache.txt
BuildSystem/Casal2
CASAL2/Build
build
R-libraries/Version.R
CASAL2/.settings
TestModels/ORH3B/sim/*
.lintr
Documentation/UserManual/CASAL2_Age.synctex.gz
Documentation/UserManual/CASAL2_Length.synctex.gz
*.txss
simCASAL2/simCASAL2.exe
TestModels/SimAllObs/sim/sim_all_obs.1_01
TestModels/SimAllObs/sim/sim_all_obs.1_02
TestModels/SimAllObs/sim/sim_all_obs.1_03
TestModels/SimAllObs/sim/sim_all_obs.1_04
TestModels/SimAllObs/sim/sim_all_obs.1_05
TestModels/SimAllObs/sim/sim_all_obs.1_06
TestModels/SimAllObs/sim/sim_all_obs.1_07
TestModels/SimAllObs/sim/sim_all_obs.1_08
TestModels/SimAllObs/sim/sim_all_obs.1_09
TestModels/SimAllObs/sim/sim_all_obs.1_10
TestModels/SimAllObs/sim/sim_all_obs.2_01
TestModels/SimAllObs/sim/sim_all_obs.2_02
TestModels/SimAllObs/sim/sim_all_obs.2_03
TestModels/SimAllObs/sim/sim_all_obs.2_04
TestModels/SimAllObs/sim/sim_all_obs.2_05
TestModels/SimAllObs/sim/sim_all_obs.2_06
TestModels/SimAllObs/sim/sim_all_obs.2_07
TestModels/SimAllObs/sim/sim_all_obs.2_08
TestModels/SimAllObs/sim/sim_all_obs.2_09
TestModels/SimAllObs/sim/sim_all_obs.2_10
TestModels/SimAllObs/sim/sim_all_obs.3_01
TestModels/SimAllObs/sim/sim_all_obs.3_02
TestModels/SimAllObs/sim/sim_all_obs.3_03
TestModels/SimAllObs/sim/sim_all_obs.3_04
TestModels/SimAllObs/sim/sim_all_obs.3_05
TestModels/SimAllObs/sim/sim_all_obs.3_06
TestModels/SimAllObs/sim/sim_all_obs.3_07
TestModels/SimAllObs/sim/sim_all_obs.3_08
TestModels/SimAllObs/sim/sim_all_obs.3_09
TestModels/SimAllObs/sim/sim_all_obs.3_10
TestModels/SimAllObs/sim/sim_all_obs.4_01
TestModels/SimAllObs/sim/sim_all_obs.4_02
TestModels/SimAllObs/sim/sim_all_obs.4_03
TestModels/SimAllObs/sim/sim_all_obs.4_04
TestModels/SimAllObs/sim/sim_all_obs.4_05
TestModels/SimAllObs/sim/sim_all_obs.4_06
TestModels/SimAllObs/sim/sim_all_obs.4_07
TestModels/SimAllObs/sim/sim_all_obs.4_08
TestModels/SimAllObs/sim/sim_all_obs.4_09
TestModels/SimAllObs/sim/sim_all_obs.4_10
TestModels/SimAllObs/sim/sim_all_obs.5_01
TestModels/SimAllObs/sim/sim_all_obs.5_02
TestModels/SimAllObs/sim/sim_all_obs.5_03
TestModels/SimAllObs/sim/sim_all_obs.5_04
TestModels/SimAllObs/sim/sim_all_obs.5_05
TestModels/SimAllObs/sim/sim_all_obs.5_06
TestModels/SimAllObs/sim/sim_all_obs.5_07
TestModels/SimAllObs/sim/sim_all_obs.5_08
TestModels/SimAllObs/sim/sim_all_obs.5_09
TestModels/SimAllObs/sim/sim_all_obs.5_10
TestModels/SimAllObs/sim/sim_all_obs.6_01
TestModels/SimAllObs/sim/sim_all_obs.6_02
TestModels/SimAllObs/sim/sim_all_obs.6_03
TestModels/SimAllObs/sim/sim_all_obs.6_04
TestModels/SimAllObs/sim/sim_all_obs.6_05
TestModels/SimAllObs/sim/sim_all_obs.6_06
TestModels/SimAllObs/sim/sim_all_obs.6_07
TestModels/SimAllObs/sim/sim_all_obs.6_08
TestModels/SimAllObs/sim/sim_all_obs.6_09
TestModels/SimAllObs/sim/sim_all_obs.6_10
TestModels/SimAllObs/sim/sim_all_obs.7_01
TestModels/SimAllObs/sim/sim_all_obs.7_02
TestModels/SimAllObs/sim/sim_all_obs.7_03
TestModels/SimAllObs/sim/sim_all_obs.7_04
TestModels/SimAllObs/sim/sim_all_obs.7_05
TestModels/SimAllObs/sim/sim_all_obs.7_06
TestModels/SimAllObs/sim/sim_all_obs.7_07
TestModels/SimAllObs/sim/sim_all_obs.7_08
TestModels/SimAllObs/sim/sim_all_obs.7_09
TestModels/SimAllObs/sim/sim_all_obs.7_10
TestModels/SimAllObs/sim/sim_all_obs.8_01
TestModels/SimAllObs/sim/sim_all_obs.8_02
TestModels/SimAllObs/sim/sim_all_obs.8_03
TestModels/SimAllObs/sim/sim_all_obs.8_04
TestModels/SimAllObs/sim/sim_all_obs.8_05
TestModels/SimAllObs/sim/sim_all_obs.8_06
TestModels/SimAllObs/sim/sim_all_obs.8_07
TestModels/SimAllObs/sim/sim_all_obs.8_08
TestModels/SimAllObs/sim/sim_all_obs.8_09
TestModels/SimAllObs/sim/sim_all_obs.8_10
TestModels/SimAllObs/sim/sim_all_obs.9_01
TestModels/SimAllObs/sim/sim_all_obs.9_02
TestModels/SimAllObs/sim/sim_all_obs.9_03
TestModels/SimAllObs/sim/sim_all_obs.9_04
TestModels/SimAllObs/sim/sim_all_obs.9_05
TestModels/SimAllObs/sim/sim_all_obs.9_06
TestModels/SimAllObs/sim/sim_all_obs.9_07
TestModels/SimAllObs/sim/sim_all_obs.9_08
TestModels/SimAllObs/sim/sim_all_obs.9_09
TestModels/SimAllObs/sim/sim_all_obs.9_10
TestModels/additional_priors/run.err
TestModels/agelength_cv_with_LF/run.err
TestModels/agelength_cv_with_LF/run.log
TestModels/agelengths_data/run.err
TestModels/Complex/run.err
TestModels/Complex/run.log
TestModels/Complex_input/run.err
TestModels/Complex_input/run.log
TestModels/ComplexTag/estimate_betadiff.err
TestModels/ComplexTag/estimate_betadiff.log
TestModels/estimates_with_matching_bounds/run.err
TestModels/LengthBasedNoPlusGroup/run.err
TestModels/LengthBasedPlusGroup/run.err
TestModels/mcmc_resume/mcmc.log
TestModels/mcmc_resume/objectives.2
TestModels/mcmc_resume/objectives.3
TestModels/mcmc_resume/samples.2
TestModels/mcmc_resume/samples.3
TestModels/mcmc_start_mpd/esimate.err
TestModels/mcmc_start_mpd/mcmc.err
TestModels/mcmc_start_mpd/mcmc.log
TestModels/mcmc_start_mpd/objectives.2
TestModels/mcmc_start_mpd/objectives.3
TestModels/mcmc_start_mpd/samples.2
TestModels/mcmc_start_mpd/samples.3
TestModels/mcmc_start_mpd_mcmc_fixed/esimate.err
TestModels/mcmc_start_mpd_mcmc_fixed/mcmc.err
TestModels/mcmc_start_mpd_mcmc_fixed/mcmc.log
TestModels/mcmc_start_mpd_mcmc_fixed/objectives.1
TestModels/mcmc_start_mpd_mcmc_fixed/samples.1
TestModels/ORH3B/multi_sim.err
TestModels/ORH3B/multi_sim.log
TestModels/SBW/estimate_betadiff.err
TestModels/SBW/estimate_betadiff.log
TestModels/SexedLengthBased/estimate_adolc.err
TestModels/SexedLengthBased/estimate_adolc.log
TestModels/SexedLengthBased/estimate_gammadiff.err
TestModels/SexedLengthBased/estimate_gammadiff.log
TestModels/SimAllObs/multi_sim.err
TestModels/SimAllObs/multi_sim.log
TestModels/Simple/estimate_betadiff.err
TestModels/Simple/estimate_betadiff.log
TestModels/SimpleDirichletMultinomial/run.err
TestModels/SingleSexTagByLength_input/run.err
TestModels/SingleSexTagByLength_input/run.log
TestModels/TwoSex_input/run.err
TestModels/TwoSex_input/run.log
TestModels/agelength_cv_with_LF/run.log
TestModels/Complex/run.log
TestModels/Complex_input/run.log
TestModels/ComplexTag/estimate_betadiff.err
TestModels/ComplexTag/estimate_betadiff.log
TestModels/LengthBasedNoPlusGroup/run.err
TestModels/mcmc_resume/mcmc.log
TestModels/mcmc_resume/objectives.2
TestModels/mcmc_resume/samples.2
TestModels/mcmc_start_mpd/esimate.err
TestModels/mcmc_start_mpd/mcmc.err
TestModels/mcmc_start_mpd/mcmc.log
TestModels/mcmc_start_mpd_mcmc_fixed/esimate.err
TestModels/mcmc_start_mpd_mcmc_fixed/mcmc.err
TestModels/mcmc_start_mpd_mcmc_fixed/mcmc.log
TestModels/mcmc_start_mpd_mcmc_fixed/objectives.1
TestModels/mcmc_start_mpd_mcmc_fixed/samples.1
TestModels/ORH3B/multi_sim.err
TestModels/ORH3B/multi_sim.log
TestModels/SBW/estimate_betadiff.err
TestModels/SBW/estimate_betadiff.log
TestModels/SexedLengthBased/estimate_adolc.log
TestModels/SexedLengthBased/estimate_betadiff.err
TestModels/SexedLengthBased/estimate_betadiff.log
TestModels/SexedLengthBased/estimate_gammadiff.log
TestModels/SimAllObs/multi_sim.err
TestModels/SimAllObs/multi_sim.log
TestModels/SingleSexTagByLength_input/run.log
TestModels/TwoSex_input/run.log
TestModels/agelength_cv_with_LF/run.log
TestModels/Complex/run.log
TestModels/Complex_input/run.log
TestModels/ComplexTag/estimate_betadiff.err
TestModels/ComplexTag/estimate_betadiff.log
TestModels/LengthBasedNoPlusGroup/run.err
TestModels/mcmc_resume/mcmc.log
TestModels/mcmc_resume/objectives.2
TestModels/mcmc_resume/samples.2
TestModels/mcmc_start_mpd/esimate.err
TestModels/mcmc_start_mpd/mcmc.err
TestModels/mcmc_start_mpd/mcmc.log
TestModels/mcmc_start_mpd_mcmc_fixed/esimate.err
TestModels/mcmc_start_mpd_mcmc_fixed/mcmc.err
TestModels/mcmc_start_mpd_mcmc_fixed/mcmc.log
TestModels/mcmc_start_mpd_mcmc_fixed/objectives.1
TestModels/mcmc_start_mpd_mcmc_fixed/samples.1
TestModels/ORH3B/multi_sim.err
TestModels/ORH3B/multi_sim.log
TestModels/SBW/estimate_betadiff.err
TestModels/SBW/estimate_betadiff.log
TestModels/SexedLengthBased/estimate_adolc.log
TestModels/SexedLengthBased/estimate_betadiff.err
TestModels/SexedLengthBased/estimate_betadiff.log
TestModels/SexedLengthBased/estimate_gammadiff.log
TestModels/SimAllObs/multi_sim.err
TestModels/SimAllObs/multi_sim.log
TestModels/Simple/estimate_gammadiff.err
TestModels/Simple/estimate_gammadiff.log
TestModels/SingleSexTagByLength_input/run.log
TestModels/TwoSex/estimate_betadiff.err
TestModels/TwoSex/estimate_betadiff.log
TestModels/TwoSex_input/run.log
TestModels/mcmc_start_mpd/objectives.1
TestModels/mcmc_start_mpd/samples.1
TestModels/mcmc_start_mpd_mcmc_fixed/mpd.log
TestModels/TwoSex/estimate_gammadiff.log
TestModels/TwoSex/estimate_gammadiff.err
TestModels/TwoSex/estimate_adolc.log
TestModels/TwoSex/estimate_adolc.err
TestModels/Simple/estimate_adolc.log
TestModels/Simple/estimate_adolc.err
TestModels/SBW/estimate_gammadiff.log
TestModels/SBW/estimate_gammadiff.err
TestModels/SBW/estimate_adolc.log
TestModels/SBW/estimate_adolc.err
TestModels/mcmc_start_mpd_mcmc_fixed/samples.2
TestModels/mcmc_start_mpd_mcmc_fixed/objectives.2
Documentation/ContributorsGuide/ContributorsGuide.synctex.gz