Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

package(s) not installed when version(s) same as or greater than current; use force = TRUE to re-install: 'SummarizedExperiment' #68

Open
bakaufman opened this issue Jan 10, 2023 · 1 comment

Comments

@bakaufman
Copy link

I get the error:
Bioconductor version 3.16 (BiocManager 1.30.19), R 4.2.2 (2022-10-31)
Warning message:
package(s) not installed when version(s) same as or greater than current; use force = TRUE to re-install: 'SummarizedExperiment'

Using force = TRUE doesn't help.

sessionInfo()
R version 4.2.2 (2022-10-31)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Monterey 12.6.2

Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats4 stats graphics grDevices utils datasets methods base

other attached packages:
[1] Biobase_2.58.0 MatrixGenerics_1.10.0 matrixStats_0.63.0 Rsamtools_2.14.0 GenomicRanges_1.50.2 BiocParallel_1.32.5
[7] BiocManager_1.30.19 Biostrings_2.66.0 GenomeInfoDb_1.34.6 XVector_0.38.0 IRanges_2.32.0 S4Vectors_0.36.1
[13] BiocGenerics_0.44.0

loaded via a namespace (and not attached):
[1] zlibbioc_1.44.0 lattice_0.20-45 tools_4.2.2 parallel_4.2.2 grid_4.2.2 crayon_1.5.2
[7] Matrix_1.5-3 GenomeInfoDbData_1.2.9 bitops_1.0-7 codetools_0.2-18 RCurl_1.98-1.9 compiler_4.2.2

valid()
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details

replacement repositories:
CRAN: https://cran.rstudio.com/

[1] TRUE

Not sure what recommended next steps are. I am still pretty new to this.

Thanks!

@LiNk-NY
Copy link
Contributor

LiNk-NY commented Jan 10, 2023

Hi @bakaufman
It means that you already have the latest version of SummarizedExperiment installed.
What does

packageVersion("SummarizedExperiment")

give you?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants