train_with_tf_estimator_hppi.json

{
  "coding" : {
    "ct"      : { "num_input" :   686, "num_classes" :  2 },
    "ac"      : { "num_input" :   420, "num_classes" :  2 },
    "ct+ac"   : { "num_input" :  1106, "num_classes" :  2 },
    "ld"      : { "num_input" :  1260, "num_classes" :  2 },
    "mos"     : { "num_input" :    58, "num_classes" :  2 }
  },
  "data_sets" : {
    "ct"      : { "coding" :    "ct", "dir" : "data/02-ct-bin" },
    "ac"      : { "coding" :    "ac", "dir" : "data/03-ac-bin" },
    "ld"      : { "coding" :    "ld", "dir" : "data/04-ld-bin" },
    "mos"     : { "coding" :   "mos", "dir" : "data/05-mos-bin" },
    "c_elegan_ct"      : { "coding" :    "ct", "dir" : "data/predict_PPI/C.elegan/bin/ct" },
    "c_elegan_ac"      : { "coding" :    "ac", "dir" : "data/predict_PPI/C.elegan/bin/ac" },
    "c_elegan_ct+ac"   : { "coding" : "ct+ac", "dir" : "data/predict_PPI/C.elegan/bin/ct+ac" },
    "drosophila_ct"    : { "coding" :    "ct", "dir" : "data/predict_PPI/Drosophila/bin/ct" },
    "drosophila_ac"    : { "coding" :    "ac", "dir" : "data/predict_PPI/Drosophila/bin/ac" },
    "drosophila_ct+ac" : { "coding" : "ct+ac", "dir" : "data/predict_PPI/Drosophila/bin/ct+ac" },
    "e_coli_ct"        : { "coding" :    "ct", "dir" : "data/predict_PPI/E.coli/bin/ct" },
    "e_coli_ac"        : { "coding" :    "ac", "dir" : "data/predict_PPI/E.coli/bin/ac" },
    "e_coli_ct+ac"     : { "coding" : "ct+ac", "dir" : "data/predict_PPI/E.coli/bin/ct+ac" },
    "human_ct"         : { "coding" :    "ct", "dir" : "data/predict_PPI/Human/bin/ct" },
    "human_ac"         : { "coding" :    "ac", "dir" : "data/predict_PPI/Human/bin/ac" },
    "human_ct+ac"      : { "coding" : "ct+ac", "dir" : "data/predict_PPI/Human/bin/ct+ac" },
    "yeast_ct"         : { "coding" :    "ct", "dir" : "data/predict_PPI/Yeast/bin/ct" },
    "yeast_ac"         : { "coding" :    "ac", "dir" : "data/predict_PPI/Yeast/bin/ac" },
    "yeast_ct+ac"      : { "coding" : "ct+ac", "dir" : "data/predict_PPI/Yeast/bin/ct+ac" },
    "rice_ct"         : { "coding" :    "ct", "dir" : "data/predict_PPI/Rice/bin/ct" },
    "rice_ac"         : { "coding" :    "ac", "dir" : "data/predict_PPI/Rice/bin/ac" },
    "rice_ct+ac"      : { "coding" : "ct+ac", "dir" : "data/predict_PPI/Rice/bin/ct+ac" },
    "rice2_ct+ac"     : { "coding" : "ct+ac", "dir" : "data/predict_PPI/Rice2/bin/ct+ac" },
    "cd_ct"      : { "coding" :    "ct", "dir" : "data/Benchmark_CD_CT" },
    "cd_ac"      : { "coding" :    "ac", "dir" : "data/Benchmark_CD_AC" },
    "cd_ld"      : { "coding" :    "ld", "dir" : "data/Benchmark_CD_LD" },
    "cd_mos"     : { "coding" :   "mos", "dir" : "data/Benchmark_CD_MOS" }
  },
  "models" : {
    "ct(686x2)_64_relu_Adam_0.01_dropout_0" : 
      { "data_sets_info" : "ct", "hidden_units" : [64], "learning_rate" : 0.01, "dropout" : 0, "times" : 30 },
    "ct(686x2)_64_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "ct", "hidden_units" : [64], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "ct(686x2)_64_relu_Adam_0.0001_dropout_0" : 
      { "data_sets_info" : "ct", "hidden_units" : [64], "learning_rate" : 0.0001, "dropout" : 0, "times" : 30 },
    "ct(686x2)_64_relu_Adam_1e-05_dropout_0" : 
      { "data_sets_info" : "ct", "hidden_units" : [64], "learning_rate" : 0.00001, "dropout" : 0, "times" : 30 },
    "ct(686x2)_128_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "ct", "hidden_units" : [128], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "ct(686x2)_256_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "ct", "hidden_units" : [256], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "ct(686x2)_512_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "ct", "hidden_units" : [512], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "ct(686x2)_1024_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "ct", "hidden_units" : [1024], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "ct(686x2)_256x256_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "ct", "hidden_units" : [256,256], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "ct(686x2)_256x256x256_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "ct", "hidden_units" : [256,256,256], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "ct(686x2)_256x256x256x256_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "ct", "hidden_units" : [256,256,256,256], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "ct(686x2)_256x256x256x256x256_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "ct", "hidden_units" : [256,256,256,256,256], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "ct(686x2)_256x256x256x256x256x256_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "ct", "hidden_units" : [256,256,256,256,256,256], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "ct(686x2)_256x256x256x256x256x256x256_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "ct", "hidden_units" : [256,256,256,256,256,256,256], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "ct(686x2)_256x256x256_relu_Adam_0.001_dropout_0.1" : 
      { "data_sets_info" : "ct", "hidden_units" : [256,256,256], "learning_rate" : 0.001, "dropout" : 0.1, "times" : 30 },
    "ct(686x2)_256x256x256_relu_Adam_0.001_dropout_0.3" : 
      { "data_sets_info" : "ct", "hidden_units" : [256,256,256], "learning_rate" : 0.001, "dropout" : 0.3, "times" : 30 },
    "ct(686x2)_256x256x256_relu_Adam_0.001_dropout_0.4" : 
      { "data_sets_info" : "ct", "hidden_units" : [256,256,256], "learning_rate" : 0.001, "dropout" : 0.4, "times" : 30 },
    "ct(686x2)_256x256x256_relu_Adam_0.001_dropout_0.5" : 
      { "data_sets_info" : "ct", "hidden_units" : [256,256,256], "learning_rate" : 0.001, "dropout" : 0.5, "times" : 30 },
    "ct(686x2)_256x256x256_relu_Adam_0.001_dropout_0.6" : 
      { "data_sets_info" : "ct", "hidden_units" : [256,256,256], "learning_rate" : 0.001, "dropout" : 0.6, "times" : 30 },
    "ct(686x2)_256x256x256_relu_Adam_0.001_dropout_0.7" : 
      { "data_sets_info" : "ct", "hidden_units" : [256,256,256], "learning_rate" : 0.001, "dropout" : 0.7, "times" : 30 },
    "ct(686x2)_256x256x256_relu_Adam_0.001_dropout_0.9" : 
      { "data_sets_info" : "ct", "hidden_units" : [256,256,256], "learning_rate" : 0.001, "dropout" : 0.9, "times" : 30 },
    "ac(420x2)_64_relu_Adam_0.01_dropout_0" : 
      { "data_sets_info" : "ac", "hidden_units" : [64], "learning_rate" : 0.01, "dropout" : 0, "times" : 30 },
    "ac(420x2)_64_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "ac", "hidden_units" : [64], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "ac(420x2)_64_relu_Adam_0.0001_dropout_0" : 
      { "data_sets_info" : "ac", "hidden_units" : [64], "learning_rate" : 0.0001, "dropout" : 0, "times" : 30 },
    "ac(420x2)_64_relu_Adam_1e-05_dropout_0" : 
      { "data_sets_info" : "ac", "hidden_units" : [64], "learning_rate" : 0.00001, "dropout" : 0, "times" : 30 },
    "ac(420x2)_128_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "ac", "hidden_units" : [128], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "ac(420x2)_256_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "ac", "hidden_units" : [256], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "ac(420x2)_512_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "ac", "hidden_units" : [512], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "ac(420x2)_1024_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "ac", "hidden_units" : [1024], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "ac(420x2)_256x256_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "ac", "hidden_units" : [256,256], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "ac(420x2)_256x256x256_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "ac", "hidden_units" : [256,256,256], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "ac(420x2)_256x256x256x256_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "ac", "hidden_units" : [256,256,256,256], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "ac(420x2)_256x256x256_relu_Adam_0.001_dropout_0.1" : 
      { "data_sets_info" : "ac", "hidden_units" : [256,256,256], "learning_rate" : 0.001, "dropout" : 0.1, "times" : 30 },
    "ac(420x2)_256x256x256_relu_Adam_0.001_dropout_0.3" : 
      { "data_sets_info" : "ac", "hidden_units" : [256,256,256], "learning_rate" : 0.001, "dropout" : 0.3, "times" : 30 },
    "ac(420x2)_256x256x256_relu_Adam_0.001_dropout_0.5" : 
      { "data_sets_info" : "ac", "hidden_units" : [256,256,256], "learning_rate" : 0.001, "dropout" : 0.5, "times" : 30 },
    "ac(420x2)_256x256x256_relu_Adam_0.001_dropout_0.7" : 
      { "data_sets_info" : "ac", "hidden_units" : [256,256,256], "learning_rate" : 0.001, "dropout" : 0.7, "times" : 30 },
    "ac(420x2)_256x256x256_relu_Adam_0.001_dropout_0.8" : 
      { "data_sets_info" : "ac", "hidden_units" : [256,256,256], "learning_rate" : 0.001, "dropout" : 0.8, "times" : 30 },
    "ac(420x2)_256x256x256_relu_Adam_0.001_dropout_0.9" : 
      { "data_sets_info" : "ac", "hidden_units" : [256,256,256], "learning_rate" : 0.001, "dropout" : 0.9, "times" : 30 },
    "mos(58x2)_64_relu_Adam_0.01_dropout_0" : 
      { "data_sets_info" : "mos", "hidden_units" : [64], "learning_rate" : 0.01, "dropout" : 0, "times" : 30 },
    "mos(58x2)_64_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "mos", "hidden_units" : [64], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "mos(58x2)_64_relu_Adam_0.0001_dropout_0" : 
      { "data_sets_info" : "mos", "hidden_units" : [64], "learning_rate" : 0.0001, "dropout" : 0, "times" : 30 },
    "mos(58x2)_64_relu_Adam_1e-05_dropout_0" : 
      { "data_sets_info" : "mos", "hidden_units" : [64], "learning_rate" : 0.00001, "dropout" : 0, "times" : 30 },
    "mos(58x2)_128_relu_Adam_0.01_dropout_0" : 
      { "data_sets_info" : "mos", "hidden_units" : [128], "learning_rate" : 0.01, "dropout" : 0, "times" : 30 },
    "mos(58x2)_256_relu_Adam_0.01_dropout_0" : 
      { "data_sets_info" : "mos", "hidden_units" : [256], "learning_rate" : 0.01, "dropout" : 0, "times" : 30 },
    "mos(58x2)_512_relu_Adam_0.01_dropout_0" : 
      { "data_sets_info" : "mos", "hidden_units" : [512], "learning_rate" : 0.01, "dropout" : 0, "times" : 30 },
    "mos(58x2)_1024_relu_Adam_0.01_dropout_0" : 
      { "data_sets_info" : "mos", "hidden_units" : [1024], "learning_rate" : 0.01, "dropout" : 0, "times" : 30 },
    "mos(58x2)_512x512_relu_Adam_0.01_dropout_0" : 
      { "data_sets_info" : "mos", "hidden_units" : [512,512], "learning_rate" : 0.01, "dropout" : 0, "times" : 30 },
    "mos(58x2)_512x512x512_relu_Adam_0.01_dropout_0" : 
      { "data_sets_info" : "mos", "hidden_units" : [512,512,512], "learning_rate" : 0.01, "dropout" : 0, "times" : 30 },
    "mos(58x2)_512x512x512x512_relu_Adam_0.01_dropout_0" : 
      { "data_sets_info" : "mos", "hidden_units" : [512,512,512,512], "learning_rate" : 0.01, "dropout" : 0, "times" : 30 },
    "mos(58x2)_512x512x512x512x512_relu_Adam_0.01_dropout_0" : 
      { "data_sets_info" : "mos", "hidden_units" : [512,512,512,512,512], "learning_rate" : 0.01, "dropout" : 0, "times" : 30 },
    "mos(58x2)_512x512x512_relu_Adam_0.01_dropout_0.1" : 
      { "data_sets_info" : "mos", "hidden_units" : [512,512,512], "learning_rate" : 0.01, "dropout" : 0.1, "times" : 30 },
    "mos(58x2)_512x512x512_relu_Adam_0.01_dropout_0.3" : 
      { "data_sets_info" : "mos", "hidden_units" : [512,512,512], "learning_rate" : 0.01, "dropout" : 0.3, "times" : 30 },
    "mos(58x2)_512x512x512_relu_Adam_0.01_dropout_0.5" : 
      { "data_sets_info" : "mos", "hidden_units" : [512,512,512], "learning_rate" : 0.01, "dropout" : 0.5, "times" : 30 },
    "mos(58x2)_512x512x512_relu_Adam_0.01_dropout_0.7" : 
      { "data_sets_info" : "mos", "hidden_units" : [512,512,512], "learning_rate" : 0.01, "dropout" : 0.7, "times" : 30 },
    "mos(58x2)_512x512x512_relu_Adam_0.01_dropout_0.9" : 
      { "data_sets_info" : "mos", "hidden_units" : [512,512,512], "learning_rate" : 0.01, "dropout" : 0.9, "times" : 30 },
    "mos(58x2)_128_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "mos", "hidden_units" : [128], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "mos(58x2)_256_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "mos", "hidden_units" : [256], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "mos(58x2)_512_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "mos", "hidden_units" : [512], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "mos(58x2)_1024_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "mos", "hidden_units" : [1024], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "mos(58x2)_64x32x16_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "mos", "hidden_units" : [64,32,16], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "mos(58x2)_128x64x32_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "mos", "hidden_units" : [128,64,32], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "mos(58x2)_256x128x64_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "mos", "hidden_units" : [256,128,64], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "mos(58x2)_512x256x128_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "mos", "hidden_units" : [512,256,128], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "mos(58x2)_512x512_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "mos", "hidden_units" : [512,512], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "ld(1260x2)_64_relu_Adam_0.01_dropout_0" : 
      { "data_sets_info" : "ld", "hidden_units" : [64], "learning_rate" : 0.01, "dropout" : 0, "times" : 30 },
    "ld(1260x2)_64_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "ld", "hidden_units" : [64], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "ld(1260x2)_64_relu_Adam_0.0001_dropout_0" : 
      { "data_sets_info" : "ld", "hidden_units" : [64], "learning_rate" : 0.0001, "dropout" : 0, "times" : 30 },
    "ld(1260x2)_64_relu_Adam_1e-05_dropout_0" : 
      { "data_sets_info" : "ld", "hidden_units" : [64], "learning_rate" : 0.00001, "dropout" : 0, "times" : 30 },
    "ld(1260x2)_128_relu_Adam_0.0001_dropout_0" : 
      { "data_sets_info" : "ld", "hidden_units" : [128], "learning_rate" : 0.0001, "dropout" : 0, "times" : 30 },
    "ld(1260x2)_256_relu_Adam_0.0001_dropout_0" : 
      { "data_sets_info" : "ld", "hidden_units" : [256], "learning_rate" : 0.0001, "dropout" : 0, "times" : 30 },
    "ld(1260x2)_512_relu_Adam_0.0001_dropout_0" : 
      { "data_sets_info" : "ld", "hidden_units" : [512], "learning_rate" : 0.0001, "dropout" : 0, "times" : 30 },
    "ld(1260x2)_1024_relu_Adam_0.0001_dropout_0" : 
      { "data_sets_info" : "ld", "hidden_units" : [1024], "learning_rate" : 0.0001, "dropout" : 0, "times" : 30 },
    "ld(1260x2)_128x128_relu_Adam_0.0001_dropout_0" : 
      { "data_sets_info" : "ld", "hidden_units" : [128,128], "learning_rate" : 0.0001, "dropout" : 0, "times" : 30 },
    "ld(1260x2)_128x128x128_relu_Adam_0.0001_dropout_0" : 
      { "data_sets_info" : "ld", "hidden_units" : [128,128,128], "learning_rate" : 0.0001, "dropout" : 0, "times" : 30 },
    "ld(1260x2)_128x128x128x128_relu_Adam_0.0001_dropout_0" : 
      { "data_sets_info" : "ld", "hidden_units" : [128,128,128,128], "learning_rate" : 0.0001, "dropout" : 0, "times" : 30 },
    "ld(1260x2)_128x64x32_relu_Adam_0.0001_dropout_0" : 
      { "data_sets_info" : "ld", "hidden_units" : [128,64,32], "learning_rate" : 0.0001, "dropout" : 0, "times" : 30 },
    "ld(1260x2)_256x128x64_relu_Adam_0.0001_dropout_0" : 
      { "data_sets_info" : "ld", "hidden_units" : [256,128,64], "learning_rate" : 0.0001, "dropout" : 0, "times" : 30 },
    "ld(1260x2)_256x128x64x32_relu_Adam_0.0001_dropout_0" : 
      { "data_sets_info" : "ld", "hidden_units" : [256,128,64,32], "learning_rate" : 0.0001, "dropout" : 0, "times" : 30 },
    "ld(1260x2)_512x256x128x64_relu_Adam_0.0001_dropout_0" : 
      { "data_sets_info" : "ld", "hidden_units" : [512,256,128,64], "learning_rate" : 0.0001, "dropout" : 0, "times" : 30 },
    "ld(1260x2)_256x128x64x32_relu_Adam_0.0001_dropout_0.001" : 
      { "data_sets_info" : "ld", "hidden_units" : [256,128,64,32], "learning_rate" : 0.0001, "dropout" : 0.001, "times" : 30 },
    "ld(1260x2)_256x128x64x32_relu_Adam_0.0001_dropout_0.01" : 
      { "data_sets_info" : "ld", "hidden_units" : [256,128,64,32], "learning_rate" : 0.0001, "dropout" : 0.01, "times" : 30 },
    "ld(1260x2)_256x128x64x32_relu_Adam_0.0001_dropout_0.1" : 
      { "data_sets_info" : "ld", "hidden_units" : [256,128,64,32], "learning_rate" : 0.0001, "dropout" : 0.1, "times" : 30 },
    "ld(1260x2)_256x128x64x32_relu_Adam_0.0001_dropout_0.3" : 
      { "data_sets_info" : "ld", "hidden_units" : [256,128,64,32], "learning_rate" : 0.0001, "dropout" : 0.3, "times" : 30 },
    "ld(1260x2)_256x128x64x32_relu_Adam_0.0001_dropout_0.5" : 
      { "data_sets_info" : "ld", "hidden_units" : [256,128,64,32], "learning_rate" : 0.0001, "dropout" : 0.5, "times" : 30 },
    "c_elegan_ct(686x2)_256x256x256_relu_Adam_0.001_dropout_0" : 
      { "data_sets_info" : "c_elegan_ct", "hidden_units" : [256,256,256], "learning_rate" : 0.001, "dropout" : 0, "times" : 30 },
    "c_elegan_ac(420x2)_256x256x256_relu_Adam_0.001_dropout_0" : 
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  }
}